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Lag0040819 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040819
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H-like superfamily protein
Genome locationchr13:8628489..8629307
RNA-Seq ExpressionLag0040819
SyntenyLag0040819
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG50387.1 hypothetical protein EZV62_022911 [Acer yangbiense]1.2e-1940Show/hide
Query:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY
        V  L     +WN+ L+++ F   D   IL +PR      D L WH++K G YTVRSGY++A +L     SSS++L   WW FLW   IP+K KIF W+ +
Subjt:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY

Query:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTS
         G+LPTF         +  Y  VC D   S
Subjt:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTS

TXG66198.1 hypothetical protein EZV62_007473 [Acer yangbiense]4.0e-1846.39Show/hide
Query:  WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTF
        WN+ LV + F+  D   IL +PR      D L WH++K G Y+VRSGY+MA  L  R   SS++L   WW+FLW   +P+K KIF W+ ++G+LPTF
Subjt:  WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTF

XP_017250619.1 PREDICTED: uncharacterized protein LOC108221234 [Daucus carota subsp. sativus]5.7e-1738.1Show/hide
Query:  SWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFLL
        +WN  L++  F   D + ILEIP  R    D   WHY   G YTV+SGY++   L    SSSS ++M KWW + W  +IP KI IF WR Y+  LPT   
Subjt:  SWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFLL

Query:  PKMHNYKLNTYAAVCRDSRTSSIGAI
          +    L++   +C  +  S+  A+
Subjt:  PKMHNYKLNTYAAVCRDSRTSSIGAI

XP_024043202.1 uncharacterized protein LOC112099905 [Citrus clementina]2.3e-1831.47Show/hide
Query:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY
        V +L+   N+W TGL+Q    + D EAIL IP PR  S+D ++WHY+K G Y V+SGY++A +L    S +        WN +W   +P+KIKIF WR  
Subjt:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY

Query:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAIIRDKEGRVMLTLMKLVQYVQDVDALEAGILETGSRDGFREANRVAHTAARQVLELGVQGVWL
           LPT             Y   C +   +++ A+I  K  + +  L  L    Q          E G+ D   +  RV    +R  +E+ +  +W+
Subjt:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAIIRDKEGRVMLTLMKLVQYVQDVDALEAGILETGSRDGFREANRVAHTAARQVLELGVQGVWL

XP_030487384.1 uncharacterized protein LOC115704310 [Cannabis sativa]1.2e-1734.15Show/hide
Query:  SWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFLL
        +W+   V+++F   D + IL +P      +D+++WHY K G Y+VRSGYRMA  L  R   S  E   KWW  LW  +IP K+K F W++ + ++PT  +
Subjt:  SWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFLL

Query:  PKMHNYKLNTYAAVCRDSRTSSI
            N ++  Y + C +    ++
Subjt:  PKMHNYKLNTYAAVCRDSRTSSI

TrEMBL top hitse value%identityAlignment
A0A5C7H0P0 Uncharacterized protein6.0e-2040Show/hide
Query:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY
        V  L     +WN+ L+++ F   D   IL +PR      D L WH++K G YTVRSGY++A +L     SSS++L   WW FLW   IP+K KIF W+ +
Subjt:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY

Query:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTS
         G+LPTF         +  Y  VC D   S
Subjt:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTS

A0A5C7IAM9 Uncharacterized protein1.9e-1846.39Show/hide
Query:  WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTF
        WN+ LV + F+  D   IL +PR      D L WH++K G Y+VRSGY+MA  L  R   SS++L   WW+FLW   +P+K KIF W+ ++G+LPTF
Subjt:  WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTF

A0A803NLN2 Uncharacterized protein2.5e-1830.43Show/hide
Query:  MRVDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWR
        MRV  L   D +WN   ++ +F  +D + IL IP      +D ++WHY  +G Y+V+SGYR+A  L      S+V    +WW  +W  ++P K+K F W+
Subjt:  MRVDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWR

Query:  LYYGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAII
        + + +LPT+ +   H    +     C   +   +G ++
Subjt:  LYYGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAII

A0A803Q185 Uncharacterized protein6.6e-1943.93Show/hide
Query:  DNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPT-
        D +W+   + ++F + D E IL +P       D+++WHY K+G Y+V+SGYRMACEL A    S   L  +WW  LW  +IP KIK+F W+L +G+LPT 
Subjt:  DNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPT-

Query:  FLLPKMH
         +L K H
Subjt:  FLLPKMH

A0A803QH76 Uncharacterized protein5.6e-1836.5Show/hide
Query:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY
        V+  +  +  W+  L+Q  F ++D + IL IP       D+++WH+   G YTV+SGY +A  L +R   SS    RKWWN LW+ Q+P K+KIF WRL 
Subjt:  VDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLY

Query:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAIIR
           LPT +         +   A+C+ S  S   A+ R
Subjt:  YGYLPTFLLPKMHNYKLNTYAAVCRDSRTSSIGAIIR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G22440.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT4G29090.1)2.7e-0433.33Show/hide
Query:  DVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACEL
        D++ +  N W    +Q++   +D   IL I   R    D   W + K G YTV+SGY +A +L
Subjt:  DVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACEL

AT3G09510.1 Ribonuclease H-like superfamily protein9.1e-0526.61Show/hide
Query:  MRVDVLLRRDNS---WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACE------LGARASSSSVELMRKWWNFLWNRQIP
        M ++ L  R  S   W+   +     + D   I  I   +    D+++W+Y   G YTVRSGY +                 S++L  +    +WN  I 
Subjt:  MRVDVLLRRDNS---WNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACE------LGARASSSSVELMRKWWNFLWNRQIP

Query:  SKIKIFGWR
         K+K F WR
Subjt:  SKIKIFGWR

AT4G29090.1 Ribonuclease H-like superfamily protein4.1e-0525.23Show/hide
Query:  DVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSS---SVELMRKWWNFLWNRQIPSKIKIFGWR
        D++      W   +++ +F E++ + I E+        D   W Y   G YTV+SGY +  ++  + SS    S   +   +  +W  Q   KI+ F W+
Subjt:  DVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSS---SVELMRKWWNFLWNRQIPSKIKIFGWR

Query:  LYYGYLP
             LP
Subjt:  LYYGYLP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGTGGATGTGCTGTTACGCCGGGATAACTCATGGAATACGGGCTTGGTTCAGTCAATATTTAAAGAAATTGATGATGAAGCCATACTTGAGATTCCGAGACCACG
ATGTCTAAGCCAAGATAGGTTAGTATGGCACTATGAGAAACATGGCCTGTACACAGTTAGAAGTGGCTATAGAATGGCTTGTGAGTTAGGGGCTAGGGCGAGTAGCTCGA
GTGTGGAACTAATGAGGAAATGGTGGAATTTCCTATGGAACAGACAGATCCCAAGTAAGATAAAGATATTTGGGTGGAGATTGTATTATGGCTACCTTCCTACCTTCCTA
CTGCCTAAGATGCATAACTATAAACTCAATACATATGCAGCTGTATGCAGAGACTCAAGAACTAGCAGTATAGGTGCTATTATTCGAGATAAAGAAGGGAGGGTAATGCT
CACCCTAATGAAGTTGGTGCAGTATGTGCAGGACGTGGATGCTTTAGAGGCTGGGATTCTTGAGACTGGAAGTAGAGACGGATTCAGAGAGGCCAACCGCGTAGCCCATA
CAGCAGCACGGCAGGTGCTGGAGCTTGGAGTGCAAGGAGTTTGGCTGGAGGAAGTTCCGGCGTCGATGGTAGAGGAATGTGGCAAAGAAATTTTGGACAGGCTTATGGAA
TTGTCGAGTGTTTTGTCTCAGAGTTTCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGTGGATGTGCTGTTACGCCGGGATAACTCATGGAATACGGGCTTGGTTCAGTCAATATTTAAAGAAATTGATGATGAAGCCATACTTGAGATTCCGAGACCACG
ATGTCTAAGCCAAGATAGGTTAGTATGGCACTATGAGAAACATGGCCTGTACACAGTTAGAAGTGGCTATAGAATGGCTTGTGAGTTAGGGGCTAGGGCGAGTAGCTCGA
GTGTGGAACTAATGAGGAAATGGTGGAATTTCCTATGGAACAGACAGATCCCAAGTAAGATAAAGATATTTGGGTGGAGATTGTATTATGGCTACCTTCCTACCTTCCTA
CTGCCTAAGATGCATAACTATAAACTCAATACATATGCAGCTGTATGCAGAGACTCAAGAACTAGCAGTATAGGTGCTATTATTCGAGATAAAGAAGGGAGGGTAATGCT
CACCCTAATGAAGTTGGTGCAGTATGTGCAGGACGTGGATGCTTTAGAGGCTGGGATTCTTGAGACTGGAAGTAGAGACGGATTCAGAGAGGCCAACCGCGTAGCCCATA
CAGCAGCACGGCAGGTGCTGGAGCTTGGAGTGCAAGGAGTTTGGCTGGAGGAAGTTCCGGCGTCGATGGTAGAGGAATGTGGCAAAGAAATTTTGGACAGGCTTATGGAA
TTGTCGAGTGTTTTGTCTCAGAGTTTCTTTTAG
Protein sequenceShow/hide protein sequence
MRVDVLLRRDNSWNTGLVQSIFKEIDDEAILEIPRPRCLSQDRLVWHYEKHGLYTVRSGYRMACELGARASSSSVELMRKWWNFLWNRQIPSKIKIFGWRLYYGYLPTFL
LPKMHNYKLNTYAAVCRDSRTSSIGAIIRDKEGRVMLTLMKLVQYVQDVDALEAGILETGSRDGFREANRVAHTAARQVLELGVQGVWLEEVPASMVEECGKEILDRLME
LSSVLSQSFF