; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040824 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040824
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:8706729..8711207
RNA-Seq ExpressionLag0040824
SyntenyLag0040824
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-3735.04Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+PRRPL DRE+ +            L+GG ++M+W+P+ K 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS
         +  ASA+     L S +RP P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + ++ ++HIFI C +   +W  
Subjt:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS

Query:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL
             G+N  I S +N + +    +K  S++ ++
Subjt:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL

KAA0046762.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.1e-3537.68Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F +N  W+L +G +ISFW+ +W+  G L  A PRLFALS  K++TV DAW+   + W +  RR L DRE    A+     P P  + G+    W PDSK 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHL
         F +ASA+             P S +   +WK+ IP KIKFF+W +I R++NT + +QH   +  L PS C LC   S+   H+F+HC     +W     
Subjt:  RFFVASARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHL

Query:  ATGINMS
        A  + +S
Subjt:  ATGINMS

KAA0056839.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-3435.38Show/hide
Query:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS
        W   DGS +SFWH  W ++ PL    PRL+ALS+ ++ TV + WD  +  W + PRRPL +RE         S P    + G     W+P   +++ VAS
Subjt:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS

Query:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM
        A+   +  SS  +         +LW++ IP+K KFFIWT+++++LNT D++Q    S +LNPS C  C + +++++H+FI C  A ++W  +   TG  M
Subjt:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM

Query:  SIPSQVNWICLE
        +  + V  +CL+
Subjt:  SIPSQVNWICLE

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.3e-3735.04Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+PRRPL DRE+ +            L+GG ++M+W+P+ K 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS
         +  ASA+     L S +RP P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + ++ ++HIFI C +   +W  
Subjt:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS

Query:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL
             G+N  I S +N + +    +K  S++ ++
Subjt:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL

TYK08190.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.6e-3435.38Show/hide
Query:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS
        W   DGS +SFWH  W ++ PL   +PRL+ALS+ ++ TV + WD  +  W + PRRPL +RE         S P    + G     W+P   +++ VAS
Subjt:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS

Query:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM
        A+   +  SS  +         +LW++ IP+K KFFIWT+++++LNT D +Q    S +LNPS C  C + +++++H+FI C  A  +W  +   TG  M
Subjt:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM

Query:  SIPSQVNWICLE
         + + V  +CL+
Subjt:  SIPSQVNWICLE

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein2.1e-3735.04Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+PRRPL DRE+ +            L+GG ++M+W+P+ K 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS
         +  ASA+     L S +RP P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + ++ ++HIFI C +   +W  
Subjt:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS

Query:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL
             G+N  I S +N + +    +K  S++ ++
Subjt:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL

A0A5A7TTK1 LINE-1 retrotransposable element ORF2 protein5.1e-3637.68Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F +N  W+L +G +ISFW+ +W+  G L  A PRLFALS  K++TV DAW+   + W +  RR L DRE    A+     P P  + G+    W PDSK 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHL
         F +ASA+             P S +   +WK+ IP KIKFF+W +I R++NT + +QH   +  L PS C LC   S+   H+F+HC     +W     
Subjt:  RFFVASARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHL

Query:  ATGINMS
        A  + +S
Subjt:  ATGINMS

A0A5A7US62 LINE-1 retrotransposable element ORF2 protein1.3e-3435.38Show/hide
Query:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS
        W   DGS +SFWH  W ++ PL   +PRL+ALS+ ++ TV + WD  +  W + PRRPL +RE         S P    + G     W+P   +++ VAS
Subjt:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS

Query:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM
        A+   +  SS  +         +LW++ IP+K KFFIWT+++++LNT D +Q    S +LNPS C  C + +++++H+FI C  A  +W  +   TG  M
Subjt:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM

Query:  SIPSQVNWICLE
         + + V  +CL+
Subjt:  SIPSQVNWICLE

A0A5A7UTI6 LINE-1 retrotransposable element ORF2 protein7.4e-3535.38Show/hide
Query:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS
        W   DGS +SFWH  W ++ PL    PRL+ALS+ ++ TV + WD  +  W + PRRPL +RE         S P    + G     W+P   +++ VAS
Subjt:  WNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVAS

Query:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM
        A+   +  SS  +         +LW++ IP+K KFFIWT+++++LNT D++Q    S +LNPS C  C + +++++H+FI C  A ++W  +   TG  M
Subjt:  ARHFYWNLSSPDRPQPHSIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINM

Query:  SIPSQVNWICLE
        +  + V  +CL+
Subjt:  SIPSQVNWICLE

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein2.1e-3735.04Show/hide
Query:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR
        F  ++ W +KDG  +SFWH +W   G L    PRL+ LS  +N T+ + WD  T+ W L+PRRPL DRE+ +            L+GG ++M+W+P+ K 
Subjt:  FLANTVWNLKDGSKISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKR

Query:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS
         +  ASA+     L S +RP P+      +  LWK+ +PKK KFF+W++ +  +NTTD LQ    +T L PS C L  + ++ ++HIFI C +   +W  
Subjt:  RFFVASARHFYWNLSSPDRPQPH---SIIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLS

Query:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL
             G+N  I S +N + +    +K  S++ ++
Subjt:  FHLATGINMSIPSQVNWICLESFAVKATSQREIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGAGAGAGATAAGTCTTAAATCCCTAAAACCATTTCATCTTCCTCATTCGATTGACAGCAGAAGAGCAACCCCCCCTCGCGCCATCGTCGCTTTCCCTGCGTT
GTTGTCTCCCCGCCGATTACGGTCGTCTCGCTCCGCCTCCGGTCGTTGCCCCTCCGACTCCAGCCATCTCCCTTCGCCTCCTACCGTCTCCCTCTGCATCTGGCCTTCTC
CCCGCCGCCTCATCCTTCGATTTCTTGAAGGTGTTCGGGGAGGATCACAAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTT
GGTGGGGCTGAGGAAAAAGGGGTTCTGCCGACGCCGTCTACATGGCGTCGGCAGAAATTGGCCAATTTGCTCCCACGCACTGTTCTCTCGACGCAGTTTTACGGCGTCGA
GAAAAACTATTTCTGCCGACGGGGTTCTTCCGACTATCTTCCCGACGCATCAAACGGCGTCGGGAGAACTTATGTCGACGCCGAATGGGACTTCTGCCGACGTCGACCCG
CGTCGGGAAAGGGCGCGATTCACTTCCTCCCAAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCTGGCAAATACAGTATGGAATCTTAAGGATGGCAGTAAA
ATCTCTTTTTGGCATGACTCTTGGACCGATCATGGGCCATTATATCAAGCCCTTCCTCGCCTTTTCGCGTTGTCTAGTAGGAAAAATATGACTGTCTCGGATGCTTGGGA
CCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTTGACAGGGAGGTCTTTGTTCAGGCGGAATGTGCTTCCTCCTTCCCAACTCCTGCATTATCCGGAG
GGGCGGACCACATGCTTTGGAGCCCGGACTCCAAGAGACGCTTCTTCGTTGCTTCAGCTAGGCATTTCTATTGGAATCTGTCATCGCCAGATCGGCCACAACCTCATTCC
ATTATTTTCTTAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAATTCTTTATTTGGACGGTTATTTACAGAAGATTAAATACAACAGACAGGCTTCAACATATTTT
CAAATCCACTGCTCTAAATCCGAGCTGTTGCCCCCTTTGCCATGCAGGCTCAGATGAGTTGGATCATATTTTTATCCATTGTGGGGTTGCTTCAGATATTTGGCTCTCTT
TTCATCTAGCTACTGGTATTAATATGTCAATTCCTAGCCAGGTGAATTGGATTTGTTTAGAGTCCTTCGCAGTCAAGGCTACTTCGCAGAGGGAAATACTTATTCAGTCC
ATGACGGCAGCAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGAGAGAGATAAGTCTTAAATCCCTAAAACCATTTCATCTTCCTCATTCGATTGACAGCAGAAGAGCAACCCCCCCTCGCGCCATCGTCGCTTTCCCTGCGTT
GTTGTCTCCCCGCCGATTACGGTCGTCTCGCTCCGCCTCCGGTCGTTGCCCCTCCGACTCCAGCCATCTCCCTTCGCCTCCTACCGTCTCCCTCTGCATCTGGCCTTCTC
CCCGCCGCCTCATCCTTCGATTTCTTGAAGGTGTTCGGGGAGGATCACAAGGCACTTCACATTGTCCAGAAGCACGTGAGTTCAAGTTGATTTTCTCAATGGTGTATGTT
GGTGGGGCTGAGGAAAAAGGGGTTCTGCCGACGCCGTCTACATGGCGTCGGCAGAAATTGGCCAATTTGCTCCCACGCACTGTTCTCTCGACGCAGTTTTACGGCGTCGA
GAAAAACTATTTCTGCCGACGGGGTTCTTCCGACTATCTTCCCGACGCATCAAACGGCGTCGGGAGAACTTATGTCGACGCCGAATGGGACTTCTGCCGACGTCGACCCG
CGTCGGGAAAGGGCGCGATTCACTTCCTCCCAAGCGCCATGGACATCAATTCTCAAGCAAGCCTCTCTTTTCTGGCAAATACAGTATGGAATCTTAAGGATGGCAGTAAA
ATCTCTTTTTGGCATGACTCTTGGACCGATCATGGGCCATTATATCAAGCCCTTCCTCGCCTTTTCGCGTTGTCTAGTAGGAAAAATATGACTGTCTCGGATGCTTGGGA
CCACACCACTTCATCGTGGAAGCTTTATCCTAGACGCCCTTTGTTTGACAGGGAGGTCTTTGTTCAGGCGGAATGTGCTTCCTCCTTCCCAACTCCTGCATTATCCGGAG
GGGCGGACCACATGCTTTGGAGCCCGGACTCCAAGAGACGCTTCTTCGTTGCTTCAGCTAGGCATTTCTATTGGAATCTGTCATCGCCAGATCGGCCACAACCTCATTCC
ATTATTTTCTTAAATCTATGGAAGGCTCTGATTCCAAAAAAGATCAAATTCTTTATTTGGACGGTTATTTACAGAAGATTAAATACAACAGACAGGCTTCAACATATTTT
CAAATCCACTGCTCTAAATCCGAGCTGTTGCCCCCTTTGCCATGCAGGCTCAGATGAGTTGGATCATATTTTTATCCATTGTGGGGTTGCTTCAGATATTTGGCTCTCTT
TTCATCTAGCTACTGGTATTAATATGTCAATTCCTAGCCAGGTGAATTGGATTTGTTTAGAGTCCTTCGCAGTCAAGGCTACTTCGCAGAGGGAAATACTTATTCAGTCC
ATGACGGCAGCAATTTAA
Protein sequenceShow/hide protein sequence
MASREISLKSLKPFHLPHSIDSRRATPPRAIVAFPALLSPRRLRSSRSASGRCPSDSSHLPSPPTVSLCIWPSPRRLILRFLEGVRGGSQGTSHCPEAREFKLIFSMVYV
GGAEEKGVLPTPSTWRRQKLANLLPRTVLSTQFYGVEKNYFCRRGSSDYLPDASNGVGRTYVDAEWDFCRRRPASGKGAIHFLPSAMDINSQASLSFLANTVWNLKDGSK
ISFWHDSWTDHGPLYQALPRLFALSSRKNMTVSDAWDHTTSSWKLYPRRPLFDREVFVQAECASSFPTPALSGGADHMLWSPDSKRRFFVASARHFYWNLSSPDRPQPHS
IIFLNLWKALIPKKIKFFIWTVIYRRLNTTDRLQHIFKSTALNPSCCPLCHAGSDELDHIFIHCGVASDIWLSFHLATGINMSIPSQVNWICLESFAVKATSQREILIQS
MTAAI