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Lag0040828 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040828
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:8730799..8731348
RNA-Seq ExpressionLag0040828
SyntenyLag0040828
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039770.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1439.34Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW
        RN +   HLF+ C +A SIW     H ++  +  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W
Subjt:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW

Query:  ASSSPFFCNYEASMISLNWEAF
         S S  F NY+AS I+LN  AF
Subjt:  ASSSPFFCNYEASMISLNWEAF
KAA0040037.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]7.1e-1539.67Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  D C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
TYK06777.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1438.84Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
TYK14764.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]2.7e-1438.84Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
XP_016902461.1 PREDICTED: LINE-1 retrotransposable element ORF2 protein [Cucumis melo]2.7e-1439.34Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW
        RN +   HLF+ C +A SIW     H ++  +  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W
Subjt:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW

Query:  ASSSPFFCNYEASMISLNWEAF
         S S  F NY+AS I+LN  AF
Subjt:  ASSSPFFCNYEASMISLNWEAF
TrEMBL top hitse value%identityAlignment
A0A5A7TES3 LINE-1 retrotransposable element ORF2 protein3.4e-1539.67Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  D C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
A0A5D3C4J1 LINE-1 retrotransposable element ORF2 protein1.3e-1438.84Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
A0A5D3CPL6 LINE-1 retrotransposable element ORF2 protein1.3e-1439.34Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW
        RN +   HLF+ C +A SIW     H ++  +  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W
Subjt:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW

Query:  ASSSPFFCNYEASMISLNWEAF
         S S  F NY+AS I+LN  AF
Subjt:  ASSSPFFCNYEASMISLNWEAF
A0A5D3CUY9 LINE-1 retrotransposable element ORF2 protein1.3e-1438.84Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA
        RN +   HLF+ C +A SIW         ++  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W 
Subjt:  RNSKILDHLFLHCEVAYSIWERFHQATGFHLP-LSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFWA

Query:  SSSPFFCNYEASMISLNWEAF
        S S  F NY+AS I+LN  AF
Subjt:  SSSPFFCNYEASMISLNWEAF
A0A5D3DM72 LINE-1 retrotransposable element ORF2 protein1.3e-1439.34Show/hide
Query:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW
        RN +   HLF+ C +A SIW     H ++  +  LSP+  + C+ +  WK  + + +++     ++LW IW ERN  IF G  +  ++I EDI ALAG W
Subjt:  RNSKILDHLFLHCEVAYSIWERF--HQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFALAGFW

Query:  ASSSPFFCNYEASMISLNWEAF
         S S  F NY+AS I+LN  AF
Subjt:  ASSSPFFCNYEASMISLNWEAF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein7.8e-0427.27Show/hide
Query:  HLFLHCEVAYSIWERFHQATGFHLPLSPRIDDFCMNIFQWKAISSR----MILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDI
        HLF  C    ++W  F        P         M    W    SR     ++I++   A ++ IW ERN C+  G AR    +++DI
Subjt:  HLFLHCEVAYSIWERFHQATGFHLPLSPRIDDFCMNIFQWKAISSR----MILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDI

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCTTAATGCCCAAGGCTCCACTTACATTCTTCCTTGTGCACCAAGGAACTCGAAAATCTTGGATCACCTCTTCCTCCACTGTGAGGTAGCATACTCCATATGGGA
GCGGTTCCATCAAGCCACAGGTTTCCATCTTCCGTTATCCCCTCGCATTGATGACTTTTGCATGAATATTTTCCAATGGAAGGCTATCTCTTCGAGGATGATTCTTATCC
AAATGCTTGTGGGCGCTTCTTTATGGACCATTTGGAATGAGAGGAACAAGTGTATCTTCCTAGGGACCGCCCGAAACAATTCTCAAATTATGGAGGATATCTTCGCTCTG
GCCGGATTCTGGGCTTCTTCTTCTCCATTTTTTTGCAATTATGAAGCTTCTATGATATCCCTTAATTGGGAAGCTTTCATGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCCTTAATGCCCAAGGCTCCACTTACATTCTTCCTTGTGCACCAAGGAACTCGAAAATCTTGGATCACCTCTTCCTCCACTGTGAGGTAGCATACTCCATATGGGA
GCGGTTCCATCAAGCCACAGGTTTCCATCTTCCGTTATCCCCTCGCATTGATGACTTTTGCATGAATATTTTCCAATGGAAGGCTATCTCTTCGAGGATGATTCTTATCC
AAATGCTTGTGGGCGCTTCTTTATGGACCATTTGGAATGAGAGGAACAAGTGTATCTTCCTAGGGACCGCCCGAAACAATTCTCAAATTATGGAGGATATCTTCGCTCTG
GCCGGATTCTGGGCTTCTTCTTCTCCATTTTTTTGCAATTATGAAGCTTCTATGATATCCCTTAATTGGGAAGCTTTCATGTAG
Protein sequenceShow/hide protein sequence
MSLNAQGSTYILPCAPRNSKILDHLFLHCEVAYSIWERFHQATGFHLPLSPRIDDFCMNIFQWKAISSRMILIQMLVGASLWTIWNERNKCIFLGTARNNSQIMEDIFAL
AGFWASSSPFFCNYEASMISLNWEAFM