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Lag0040840 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040840
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:8881936..8882552
RNA-Seq ExpressionLag0040840
SyntenyLag0040840
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF5186334.1 Ribonuclease h domain [Thalictrum thalictroides]4.7e-0729.92Show/hide
Query:  PTRIGFLRTNSEGDLVGASASYVNM------------------DFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEI
        P ++GF++ N++G L    A Y  +                  +      EL+AI +G+ L+   GY ++ V SD L+AI+ + K      +  + V++I
Subjt:  PTRIGFLRTNSEGDLVGASASYVNM------------------DFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEI

Query:  WELSDHCNECNFSHISREKNKAADYIA
        WE  +H  E  F+H  RE N+AAD +A
Subjt:  WELSDHCNECNFSHISREKNKAADYIA

KAF5202092.1 Ribonuclease h-like superfamily protein [Thalictrum thalictroides]2.7e-0741.12Show/hide
Query:  GFLRTNSEGDLVGASASYVNMDFKASL--AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKN
        G L  +SEG +V    +Y    F +S+   EL A+ +G++LAK  G+ KI V SD L  I+ ++K  EP  + + QV+EI EL+    E  F H  RE N
Subjt:  GFLRTNSEGDLVGASASYVNMDFKASL--AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKN

Query:  KAADYIA
        +AADY+A
Subjt:  KAADYIA

KAF7814237.1 putative ribonuclease H protein At1g65750 family [Senna tora]6.1e-0733.64Show/hide
Query:  PTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISRE
        P   G +  N +G  +G  + Y+        AEL AI +GL LA   G+++++V +DCL+A+  +SK       +   + +I  LS  C   +F HI RE
Subjt:  PTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISRE

Query:  KNKAADYIAK
         N+ AD +AK
Subjt:  KNKAADYIAK

XP_016482447.1 PREDICTED: uncharacterized protein LOC107803276 [Nicotiana tabacum]5.5e-0833.09Show/hide
Query:  WTIWNDRNKVIHGEVVPP----------TRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWC
        W +W  RN   HGE+V            + IGF+  +S+GD+  A    +        AE IAI E ++     GY  I + +D L     +   ++P  
Subjt:  WTIWNDRNKVIHGEVVPP----------TRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWC

Query:  EVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAKEA
         +EA V+EI +    CN C  SHI RE NK AD++A  A
Subjt:  EVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAKEA

XP_023915006.1 uncharacterized protein LOC112026546 [Quercus suber]1.8e-0625Show/hide
Query:  MKINKNSSKNDLELVATACWTIWNDRNKVIH-GEVVPPTRI----------------------------------GFLRTN-------------------
        + I KN S + LEL     W+IW +RN+ +H G   PP++I                                  GF + N                   
Subjt:  MKINKNSSKNDLELVATACWTIWNDRNKVIH-GEVVPPTRI----------------------------------GFLRTN-------------------

Query:  -SEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIA
         S+G  + AS   ++  F A ++E +A+ +G+ LA  LG  K++  SD L  I+ +++      E+   ++ I +L+   + C F H  RE N+AA  +A
Subjt:  -SEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIA

Query:  KEAK
        + A+
Subjt:  KEAK

TrEMBL top hitse value%identityAlignment
A0A2G5EWD6 RNase H domain-containing protein1.5e-0631.75Show/hide
Query:  PTRIGFLRTNSEGDLVGASASY----------------VNMDFKASL-AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIW
        P + GF++ N++G L    A Y                     K+ L  EL+AI +G+ L+   GY ++ V SD L+AI+ + K           V+EIW
Subjt:  PTRIGFLRTNSEGDLVGASASY----------------VNMDFKASL-AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIW

Query:  ELSDHCNECNFSHISREKNKAADYIA
        +  +H  E  F+H  RE N+AAD +A
Subjt:  ELSDHCNECNFSHISREKNKAADYIA

A0A7C8YXZ4 RNase H domain-containing protein1.9e-0631.13Show/hide
Query:  GFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKA
        GF+  N +G  + A   ++       +AE  A+ +GL  A   GY +I V  D +  I+ + K   P  +++  +++IW +   C + +FSHI RE N+A
Subjt:  GFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKA

Query:  ADYIAK
        AD++A+
Subjt:  ADYIAK

A0A7J6VML0 Ribonuclease h domain2.3e-0729.92Show/hide
Query:  PTRIGFLRTNSEGDLVGASASYVNM------------------DFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEI
        P ++GF++ N++G L    A Y  +                  +      EL+AI +G+ L+   GY ++ V SD L+AI+ + K      +  + V++I
Subjt:  PTRIGFLRTNSEGDLVGASASYVNM------------------DFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEI

Query:  WELSDHCNECNFSHISREKNKAADYIA
        WE  +H  E  F+H  RE N+AAD +A
Subjt:  WELSDHCNECNFSHISREKNKAADYIA

A0A7J6X108 Ribonuclease h-like superfamily protein1.3e-0741.12Show/hide
Query:  GFLRTNSEGDLVGASASYVNMDFKASL--AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKN
        G L  +SEG +V    +Y    F +S+   EL A+ +G++LAK  G+ KI V SD L  I+ ++K  EP  + + QV+EI EL+    E  F H  RE N
Subjt:  GFLRTNSEGDLVGASASYVNMDFKASL--AELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKN

Query:  KAADYIA
        +AADY+A
Subjt:  KAADYIA

M5XJW1 RNase H domain-containing protein (Fragment)9.2e-0928.67Show/hide
Query:  MKINKNSSKNDLELVATA---CWTIWNDRNKVIHGEVVPPTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQA
        + ++  S+K++L+  + A   CW IW  RN V+  +        F+  +SEG ++ A ++ +  +   ++AE +A+ +GL  A   G+ +I++  D    
Subjt:  MKINKNSSKNDLELVATA---CWTIWNDRNKVIHGEVVPPTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQA

Query:  IKFV-SKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAK
        I  +  K   PWC ++  +++IW LS       F H+ RE N  AD +AK
Subjt:  IKFV-SKNFEPWCEVEAQVKEIWELSDHCNECNFSHISREKNKAADYIAK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATCAACAAGAATTCCTCCAAAAATGACCTTGAATTGGTAGCCACAGCGTGCTGGACTATCTGGAATGACAGAAACAAAGTCATTCATGGAGAAGTTGTTCCACC
AACAAGGATCGGTTTTCTGCGTACGAATTCAGAAGGAGATTTGGTAGGCGCTTCAGCATCGTATGTGAACATGGATTTCAAGGCTTCCCTAGCTGAATTGATAGCAATAA
GTGAGGGGTTAAGGCTGGCAAAAATGCTTGGATATGTCAAAATTATGGTTATATCCGACTGTTTACAGGCTATCAAGTTTGTCTCAAAGAATTTTGAACCATGGTGTGAA
GTGGAAGCCCAAGTGAAAGAAATTTGGGAGCTGTCAGATCATTGTAATGAATGTAATTTTAGCCATATCTCTAGGGAGAAAAATAAAGCAGCTGACTATATTGCTAAGGA
AGCGAAAAGGCTTGAGCTTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATCAACAAGAATTCCTCCAAAAATGACCTTGAATTGGTAGCCACAGCGTGCTGGACTATCTGGAATGACAGAAACAAAGTCATTCATGGAGAAGTTGTTCCACC
AACAAGGATCGGTTTTCTGCGTACGAATTCAGAAGGAGATTTGGTAGGCGCTTCAGCATCGTATGTGAACATGGATTTCAAGGCTTCCCTAGCTGAATTGATAGCAATAA
GTGAGGGGTTAAGGCTGGCAAAAATGCTTGGATATGTCAAAATTATGGTTATATCCGACTGTTTACAGGCTATCAAGTTTGTCTCAAAGAATTTTGAACCATGGTGTGAA
GTGGAAGCCCAAGTGAAAGAAATTTGGGAGCTGTCAGATCATTGTAATGAATGTAATTTTAGCCATATCTCTAGGGAGAAAAATAAAGCAGCTGACTATATTGCTAAGGA
AGCGAAAAGGCTTGAGCTTAATTAA
Protein sequenceShow/hide protein sequence
MKINKNSSKNDLELVATACWTIWNDRNKVIHGEVVPPTRIGFLRTNSEGDLVGASASYVNMDFKASLAELIAISEGLRLAKMLGYVKIMVISDCLQAIKFVSKNFEPWCE
VEAQVKEIWELSDHCNECNFSHISREKNKAADYIAKEAKRLELN