; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040897 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040897
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:9431719..9443213
RNA-Seq ExpressionLag0040897
SyntenyLag0040897
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF7845245.1 transcription factor SCREAM2-like isoform X1 [Senna tora]6.9e-0732.31Show/hide
Query:  VVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFSY-VDRVWLEEWPSEISDVLRNDA---RAIVWSGWEV--
        ++E D+ ++  ++HG  Q++S +G+L+DDIR  ++ +   KV + PR  N  A  +A+ A +    +VWLE++P  ISDVL +D+    A++    E+  
Subjt:  VVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFSY-VDRVWLEEWPSEISDVLRNDA---RAIVWSGWEV--

Query:  ---IRVVFTRHKKGVQRAACSVFSQASQRV
           +R + T  + GV RAA ++     Q V
Subjt:  ---IRVVFTRHKKGVQRAACSVFSQASQRV

PRQ55763.1 putative RNA-directed DNA polymerase [Rosa chinensis]3.1e-0730.57Show/hide
Query:  EAAPVSKLKLNIDASVRPDT----------------------------------------GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLM
        E  P  +LK+NID S RP++                                        G+L A +    EF++E+D   +V  L+  L+D SEVG ++
Subjt:  EAAPVSKLKLNIDASVRPDT----------------------------------------GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLM

Query:  DDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND
        DD +  L    + K+    R+ N  A+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  DDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]2.1e-0841.58Show/hide
Query:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPW-DNDKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRNDAR
        G+L A       F +ETDSLR+  +L  +  D SEVG+L   I+  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS VL  D R
Subjt:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPW-DNDKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRNDAR

Query:  A
        +
Subjt:  A

XP_024178556.2 uncharacterized protein LOC112184522 [Rosa chinensis]1.4e-0730.52Show/hide
Query:  LKLNIDAS-------------VRPDTGVLCAAWGWRGEF---------------------------VVETDSLRLVKILHGELQDVSEVGLLMDDIRGIL
        LKLN+D +             +R D G   AA+ +R EF                           VVETD L  V+ ++   +D+SE+G L+ DI+G++
Subjt:  LKLNIDAS-------------VRPDTGVLCAAWGWRGEF---------------------------VVETDSLRLVKILHGELQDVSEVGLLMDDIRGIL

Query:  RPWDNDKVLFTPRQGNKAAHVLASLAF-SYVDRVWLEEWPSEISDVLRNDARAI
            +  V FTPRQ N+ AH LAS +F S +   W    P  + D L +  +A+
Subjt:  RPWDNDKVLFTPRQGNKAAHVLASLAF-SYVDRVWLEEWPSEISDVLRNDARAI

XP_042972969.1 uncharacterized protein LOC122304770 [Carya illinoinensis]9.0e-0731.36Show/hide
Query:  LKLNIDASV---RPDTGVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFSY-VDRVWLE
        LK+N++A+V   R   G+      +RGE  +E D+  +V+ ++    + S  G +++DI+ ++       V+F  R+GN+AAH  A LA S   + VW+E
Subjt:  LKLNIDASV---RPDTGVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFSY-VDRVWLE

Query:  EWPSEISDVLRNDARAIV
        E P E+   + +D  + V
Subjt:  EWPSEISDVLRNDARAIV

TrEMBL top hitse value%identityAlignment
A0A2P6PVI0 Putative ribonuclease H-like domain-containing protein1.3e-0639.18Show/hide
Query:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND
        G+L A +    EF++E+D   +V  L+  L+D SEVG ++DD +  L    + K+    R+ N  A+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND

A0A2P6QIV4 Putative ribonuclease H-like domain-containing protein9.7e-0739.18Show/hide
Query:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND
        G+L A +    EF++E+D   +V  L+  L+D SEVG ++DD +  L    + K+    R+ N  A+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND

A0A2P6SAP1 Putative RNA-directed DNA polymerase1.5e-0730.57Show/hide
Query:  EAAPVSKLKLNIDASVRPDT----------------------------------------GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLM
        E  P  +LK+NID S RP++                                        G+L A +    EF++E+D   +V  L+  L+D SEVG ++
Subjt:  EAAPVSKLKLNIDASVRPDT----------------------------------------GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLM

Query:  DDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND
        DD +  L    + K+    R+ N  A+ LA LA S +++ VWLEE P  I DVL  D
Subjt:  DDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFS-YVDRVWLEEWPSEISDVLRND

A0A6J1C467 uncharacterized protein LOC1110077757.5e-0736.96Show/hide
Query:  FVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWD-NDKVLFTPRQGNKAAHVLASLAF-SYVDRVWLEEWPSEISDVLRNDARAIVW
        F +ETDS ++  +L  + +D SE+G+L   IR I+          F  R+GN  AH LA +   S    VW+EEW S++S+V+  D +A+V+
Subjt:  FVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWD-NDKVLFTPRQGNKAAHVLASLAF-SYVDRVWLEEWPSEISDVLRNDARAIVW

A0A6J1DBJ7 uncharacterized protein LOC1110189731.0e-0841.58Show/hide
Query:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPW-DNDKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRNDAR
        G+L A       F +ETDSLR+  +L  +  D SEVG+L   I+  L    +     FT R GN  AH+LA LA +    ++W+EEWP EIS VL  D R
Subjt:  GVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPW-DNDKVLFTPRQGNKAAHVLASLAFSYVD-RVWLEEWPSEISDVLRNDAR

Query:  A
        +
Subjt:  A

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGCCGCCCCTGTTAGTAAGCTTAAACTTAATATTGATGCTTCTGTCAGGCCTGACACAGGGGTGCTGTGTGCTGCGTGGGGCTGGAGGGGAGAGTTTGTGGTGGA
GACTGATTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGTTGCAGGATGTTTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCGTCCTTGGGACAACG
ATAAGGTTTTGTTTACACCACGACAGGGAAACAAGGCGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATC
TCTGATGTCCTGAGGAATGATGCTAGGGCCATTGTATGGAGTGGGTGGGAGGTGATTAGAGTTGTTTTCACGAGGCATAAGAAAGGGGTCCAAAGAGCTGCCTGTAGTGT
GTTCAGTCAGGCCAGCCAAAGAGTTAAACTCAGGGCAAGTAGGGTGGCTCTAGGGAGGGCTTTACCACACACACACGCGAGAATCTTTCGGGATATCCTTGGCTTGTTTC
GCTTATGTTATCTTGCATGTTTGCTTCTCCTGGGCGAATGGTTAGCTTTCGTTGTTCAGGGCTTATCCATGGCTTGCAGCTATGAGTTCGGGGTTGGTCCATGGGTGGTA
GTAGCCATTCTGAAGCGACCTTGGAGCGTACAGATAGCTTCCTGCTTTATAAATGGATTAGATGTACAGGAGATCATACGAGTTGCTGGTTATTGTAGATTCAATGTTTG
TGCTCCAGAGCTGAATGAAGCAAGGCAATGTTTGTGCCATATCTTGCCAAAGTGGATTTGGGGACGAGGACTAGGGCTCTTTGCCTTCATATTCGCTGTGGTGAGTGAAA
TTCGAAGGAGCTTCGCGAAACAGCACCGGATCCGCTTGATGGCGAGGAGGAAGAAGGGTGGTTCGGGTGAGTGGAGGGGGATTCAGATTCAGAGATTTGGAAACAGAGTC
AGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAAAGTTGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGG
CCGATCCAAGAGATCAACAAGCCAACCAACCGATCAAGAAGATCAAGAAGTCAGTAGACCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAAATCAACA
ATCCAACAAGCCGATCCAAGAGATCAATAAGCCAACCGACCGATCAAGAAGATCAACAAATCAATAAGCCAATCCACCGATCAAGAAGATCAACAAGTCAGCAGACCGAT
CATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAAAGATCAACAAGTCAGTAGACCGAT
CATCCAAAAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGCCGCCCCTGTTAGTAAGCTTAAACTTAATATTGATGCTTCTGTCAGGCCTGACACAGGGGTGCTGTGTGCTGCGTGGGGCTGGAGGGGAGAGTTTGTGGTGGA
GACTGATTCTCTGAGGTTGGTCAAAATCCTGCATGGTGAGTTGCAGGATGTTTCGGAAGTGGGGCTGCTGATGGATGACATCCGAGGAATCCTCCGTCCTTGGGACAACG
ATAAGGTTTTGTTTACACCACGACAGGGAAACAAGGCGGCGCATGTCCTGGCTAGCTTGGCCTTTTCATATGTCGATCGTGTTTGGCTGGAAGAGTGGCCGAGCGAAATC
TCTGATGTCCTGAGGAATGATGCTAGGGCCATTGTATGGAGTGGGTGGGAGGTGATTAGAGTTGTTTTCACGAGGCATAAGAAAGGGGTCCAAAGAGCTGCCTGTAGTGT
GTTCAGTCAGGCCAGCCAAAGAGTTAAACTCAGGGCAAGTAGGGTGGCTCTAGGGAGGGCTTTACCACACACACACGCGAGAATCTTTCGGGATATCCTTGGCTTGTTTC
GCTTATGTTATCTTGCATGTTTGCTTCTCCTGGGCGAATGGTTAGCTTTCGTTGTTCAGGGCTTATCCATGGCTTGCAGCTATGAGTTCGGGGTTGGTCCATGGGTGGTA
GTAGCCATTCTGAAGCGACCTTGGAGCGTACAGATAGCTTCCTGCTTTATAAATGGATTAGATGTACAGGAGATCATACGAGTTGCTGGTTATTGTAGATTCAATGTTTG
TGCTCCAGAGCTGAATGAAGCAAGGCAATGTTTGTGCCATATCTTGCCAAAGTGGATTTGGGGACGAGGACTAGGGCTCTTTGCCTTCATATTCGCTGTGGTGAGTGAAA
TTCGAAGGAGCTTCGCGAAACAGCACCGGATCCGCTTGATGGCGAGGAGGAAGAAGGGTGGTTCGGGTGAGTGGAGGGGGATTCAGATTCAGAGATTTGGAAACAGAGTC
AGAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCCAAAGTTGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGG
CCGATCCAAGAGATCAACAAGCCAACCAACCGATCAAGAAGATCAAGAAGTCAGTAGACCGATCATCCAAGAGGATCAACAAGCTAACAAGTCGATCCAACAAATCAACA
ATCCAACAAGCCGATCCAAGAGATCAATAAGCCAACCGACCGATCAAGAAGATCAACAAATCAATAAGCCAATCCACCGATCAAGAAGATCAACAAGTCAGCAGACCGAT
CATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAAGATCAACAAGTCAGCAGACCGATCATCAAACCGATCATCCGAAAGATCAACAAGTCAGTAGACCGAT
CATCCAAAAAGATCAACAAGTCACAACAGGCCGATCCAAGAGATCATTAAGCCAGCAGACCGATCATCCAAGAAGATCAACAAGCCAATAA
Protein sequenceShow/hide protein sequence
MEAAPVSKLKLNIDASVRPDTGVLCAAWGWRGEFVVETDSLRLVKILHGELQDVSEVGLLMDDIRGILRPWDNDKVLFTPRQGNKAAHVLASLAFSYVDRVWLEEWPSEI
SDVLRNDARAIVWSGWEVIRVVFTRHKKGVQRAACSVFSQASQRVKLRASRVALGRALPHTHARIFRDILGLFRLCYLACLLLLGEWLAFVVQGLSMACSYEFGVGPWVV
VAILKRPWSVQIASCFINGLDVQEIIRVAGYCRFNVCAPELNEARQCLCHILPKWIWGRGLGLFAFIFAVVSEIRRSFAKQHRIRLMARRKKGGSGEWRGIQIQRFGNRV
RELRVQSILPESKVGRPIIQEDQQANKPIQQIIKPTGRSKRSTSQPTDQEDQEVSRPIIQEDQQANKSIQQINNPTSRSKRSISQPTDQEDQQINKPIHRSRRSTSQQTD
HPRRSTSQQTDHPRRSTSQQTDHQTDHPKDQQVSRPIIQKDQQVTTGRSKRSLSQQTDHPRRSTSQ