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Lag0040906 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040906
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptionprotein EARLY FLOWERING 4-like
Genome locationchr13:9617902..9618483
RNA-Seq ExpressionLag0040906
SyntenyLag0040906
Gene Ontology termsGO:0000122 - negative regulation of transcription by RNA polymerase II (biological process)
GO:0009649 - entrainment of circadian clock (biological process)
GO:0009909 - regulation of flower development (biological process)
GO:0010017 - red or far-red light signaling pathway (biological process)
GO:0010114 - response to red light (biological process)
GO:0042753 - positive regulation of circadian rhythm (biological process)
GO:0048573 - photoperiodism, flowering (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005667 - transcription factor complex (cellular component)
GO:0042803 - protein homodimerization activity (molecular function)
InterPro domainsIPR009741 - Protein EARLY FLOWERING 4 domain
IPR040462 - Protein EARLY FLOWERING 4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600929.1 Protein EARLY FLOWERING 4, partial [Cucurbita argyrosperma subsp. sororia]6.6e-5190.77Show/hide
Query:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ F NN+K RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

XP_008463236.2 PREDICTED: uncharacterized protein LOC103501440 [Cucumis melo]4.7e-5772.22Show/hide
Query:  FPRALVSRGPSVSLSQ-LHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPS----TMAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQH
        FPRA+     S +  Q LHVPS TDNGS+QYLV TTA FP  I  F   P   +T   +  P+     MAD NPRRKSK KPSA TTTTTTTTTSDD  H
Subjt:  FPRALVSRGPSVSLSQ-LHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPS----TMAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQH

Query:  DGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        D FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F +N+KPR+GKRG++N DA
Subjt:  DGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

XP_022956860.1 protein EARLY FLOWERING 4-like [Cucurbita moschata]1.7e-5191.54Show/hide
Query:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ F NNNK RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

XP_022976942.1 protein EARLY FLOWERING 4-like [Cucurbita maxima]6.2e-4989.68Show/hide
Query:  NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF
        N RRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDF
Subjt:  NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF

Query:  SSDFSTVFNNNNKPRNGKRGSSNQDA
        SSDFS+ F NN+K RNGKRGSSN DA
Subjt:  SSDFSTVFNNNNKPRNGKRGSSNQDA

XP_038892867.1 protein EARLY FLOWERING 4-like [Benincasa hispida]2.6e-4787.12Show/hide
Query:  MAD-NPRRKSKTKPSA--TTTTTTTTTSDDGQHDG-FPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVV
        MAD NPRRKSK KPSA  TTTTTTTTTSDDG HDG FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVV
Subjt:  MAD-NPRRKSKTKPSA--TTTTTTTTTSDDGQHDG-FPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVV

Query:  SMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        SMYSDFSSDFS+ F +N+KPRNGKRGS+N +A
Subjt:  SMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

TrEMBL top hitse value%identityAlignment
A0A0A0KM35 Elf4 domain-containing protein2.4e-4685.38Show/hide
Query:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSA TTTTTTTTTSDD  H  FPDE D EVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        YSDFSSDFST F +N+KPR GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

A0A1S3CIT1 uncharacterized protein LOC1035014402.3e-5772.22Show/hide
Query:  FPRALVSRGPSVSLSQ-LHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPS----TMAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQH
        FPRA+     S +  Q LHVPS TDNGS+QYLV TTA FP  I  F   P   +T   +  P+     MAD NPRRKSK KPSA TTTTTTTTTSDD  H
Subjt:  FPRALVSRGPSVSLSQ-LHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPS----TMAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQH

Query:  DGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        D FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDFSSDFST F +N+KPR+GKRG++N DA
Subjt:  DGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

A0A5A7SR92 Protein EARLY FLOWERING 41.3e-4786.92Show/hide
Query:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSK KPSA TTTTTTTTTSDD  HD FPDE DAEVWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        YSDFSSDFST F +N+KPR+GKRG++N DA
Subjt:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

A0A6J1GYX8 protein EARLY FLOWERING 4-like8.4e-5291.54Show/hide
Query:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM
        MAD NPRRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECDA+VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSM
Subjt:  MAD-NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSM

Query:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA
        YSDFSSDFS+ F NNNK RNGKRGSSN DA
Subjt:  YSDFSSDFSTVFNNNNKPRNGKRGSSNQDA

A0A6J1IH33 protein EARLY FLOWERING 4-like3.0e-4989.68Show/hide
Query:  NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF
        N RRKSKTKPSA TTTTTTTTTSDDG+HDGFPDECD +VWASFDQTFRQVQSVLDRNR LIQQVNENHQSRI SNMVDNVALIQELNGNISKVVSMYSDF
Subjt:  NPRRKSKTKPSA-TTTTTTTTTSDDGQHDGFPDECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDF

Query:  SSDFSTVFNNNNKPRNGKRGSSNQDA
        SSDFS+ F NN+K RNGKRGSSN DA
Subjt:  SSDFSTVFNNNNKPRNGKRGSSNQDA

SwissProt top hitse value%identityAlignment
O04211 Protein EARLY FLOWERING 42.6e-2163.41Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNG
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+MYSD ++ FS+ F+      +G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNG

O80877 Protein ELF4-LIKE 11.5e-1350Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNK
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ +YSD S +F+  F+   +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNK

Q570U6 Protein ELF4-LIKE 49.1e-1144.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q8S8F5 Protein ELF4-LIKE 36.3e-1244.44Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+I  N+  NV LI+ELN N+ +V  +Y D S++FS
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Q94BS8 Protein ELF4-LIKE 23.5e-1041.25Show/hide
Query:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + GF +  + D ++  +F ++F QVQ +LD+NR LI ++N+NH+S+ + ++  NV LI+ELN NI  V S+Y D S  F+
Subjt:  HDGFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

Arabidopsis top hitse value%identityAlignment
AT1G17455.1 ELF4-like 46.5e-1244.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT1G17455.2 ELF4-like 46.5e-1244.87Show/hide
Query:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        GF D    D ++  SF ++F  VQ +LD+NR LI ++N+NH+S+   N+  NV LI+ELN NI +V S+Y D S  F+
Subjt:  GFPD--ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G06255.1 ELF4-like 34.5e-1344.44Show/hide
Query:  ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS
        + D ++  +F+++F QVQ++LD NR LI ++N+NH+S+I  N+  NV LI+ELN N+ +V  +Y D S++FS
Subjt:  ECDAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFS

AT2G29950.1 ELF4-like 11.1e-1450Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNK
        D EVW +    F++ Q  LD+NR LIQ+VNENH SRI  N+  NV LI E+NGNIS+V+ +YSD S +F+  F+   +
Subjt:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNK

AT2G40080.1 Protein of unknown function (DUF1313)1.8e-2263.41Show/hide
Query:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNG
        D  +W + D+ FRQVQSVLDRNR+LIQQVN+NHQSR++ NM  NVALIQELNGNISKVV+MYSD ++ FS+ F+      +G
Subjt:  DAEVWASFDQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTTTCCACGCGCTCTTGTCTCGCGTGGGCCCTCTGTAAGTCTCTCACAGCTCCACGTCCCGAGCTGCACCGATAATGGATCCACTCAGTATTTAGTCTTCACCAC
CGCCATTTTTCCTCTGCACATTTCCACCTTCAACCTTCCCCCTTTACAAACTCAAACTTCCAAACTCTTCAACTCCCCTTCAACCATGGCCGACAACCCCCGCCGCAAGT
CCAAAACAAAGCCCTCGGCAACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTCTGGGCCTCCTTC
GACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGCACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGT
GGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAACAAACCCAGAAATG
GCAAAAGGGGCAGCAGCAACCAAGATGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTCTTTCCACGCGCTCTTGTCTCGCGTGGGCCCTCTGTAAGTCTCTCACAGCTCCACGTCCCGAGCTGCACCGATAATGGATCCACTCAGTATTTAGTCTTCACCAC
CGCCATTTTTCCTCTGCACATTTCCACCTTCAACCTTCCCCCTTTACAAACTCAAACTTCCAAACTCTTCAACTCCCCTTCAACCATGGCCGACAACCCCCGCCGCAAGT
CCAAAACAAAGCCCTCGGCAACCACCACCACCACCACAACCACCACCAGCGACGACGGCCAGCACGACGGCTTCCCTGACGAATGCGACGCCGAGGTCTGGGCCTCCTTC
GACCAGACCTTCCGGCAGGTCCAGTCGGTGCTGGACCGAAACAGAGCACTGATTCAACAGGTGAACGAGAATCATCAGTCTCGAATTTCCAGCAACATGGTGGACAACGT
GGCTCTGATCCAAGAACTCAATGGAAACATCTCAAAAGTTGTCTCCATGTACTCCGATTTCTCCTCTGATTTCTCCACTGTGTTCAATAACAACAACAAACCCAGAAATG
GCAAAAGGGGCAGCAGCAACCAAGATGCTTAA
Protein sequenceShow/hide protein sequence
MFFPRALVSRGPSVSLSQLHVPSCTDNGSTQYLVFTTAIFPLHISTFNLPPLQTQTSKLFNSPSTMADNPRRKSKTKPSATTTTTTTTTSDDGQHDGFPDECDAEVWASF
DQTFRQVQSVLDRNRALIQQVNENHQSRISSNMVDNVALIQELNGNISKVVSMYSDFSSDFSTVFNNNNKPRNGKRGSSNQDA