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Lag0040916 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040916
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:9736359..9736979
RNA-Seq ExpressionLag0040916
SyntenyLag0040916
Gene Ontology termsGO:0006281 - DNA repair (biological process)
GO:0110165 - cellular anatomical structure (cellular component)
GO:0004518 - nuclease activity (molecular function)
InterPro domainsIPR004808 - AP endonuclease 1
IPR036691 - Endonuclease/exonuclease/phosphatase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RVW64408.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.2e-4347.06Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MK LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL + GASGGI+I+W        E + G FS+++     + 
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
         SFWL+++YGP +   R DFW EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  L+D PL+N  FTWS+M
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

RVW78875.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]9.9e-4548.66Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MK LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL + GASGGI+I+W    +   E + G FS+++ +   + 
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
         SFWLS++YGP     R DFW EL DL GL    W VGGDFNV R  +EK  D  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

RVX07754.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]3.2e-4347.85Show/hide
Query:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF
        K LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL + GASGGI+I+W    +   E + G FS+++ +   +  
Subjt:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF

Query:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
        SFWL+++YGP     R DFW EL DL GL    W VGGDFNV R   EK  D  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

RVX15530.1 putative ribonuclease H protein [Vitis vinifera]2.4e-4347.31Show/hide
Query:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF
        K LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL + GASGGI+I+W    +   E + G FS+++     +  
Subjt:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF

Query:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
        SFWL+++YGP +   R DFW EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

XP_022158956.1 uncharacterized protein LOC111025405 [Momordica charantia]8.1e-5551.53Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MKFL+WNV+GL SWK   +IK  IS+ NP+ V+LQETK +     ++KS+WS+  I W+ALD+ G + GI+I+W+DPD    E I G+FSL+I+ C++DG
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCW
        F FW+S IYGP+       FWQEL DL+ L  N WI+ GDFNVTRW+WEKSN +P+T +M +FN +IE+  L+D+PL NG+ TWS      L+ C+
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCW

TrEMBL top hitse value%identityAlignment
A0A438FWU5 LINE-1 retrotransposable element ORF2 protein1.5e-4347.06Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MK LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL + GASGGI+I+W        E + G FS+++     + 
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
         SFWL+++YGP +   R DFW EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  L+D PL+N  FTWS+M
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

A0A438H302 LINE-1 retrotransposable element ORF2 protein4.8e-4548.66Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MK LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL + GASGGI+I+W    +   E + G FS+++ +   + 
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
         SFWLS++YGP     R DFW EL DL GL    W VGGDFNV R  +EK  D  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

A0A438JFM2 LINE-1 retrotransposable element ORF2 protein1.5e-4347.85Show/hide
Query:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF
        K LSWN +GLGS K R  ++  +S QNP  V+LQETK+    RRL+ SIW    + W AL + GASGGI+I+W    +   E + G FS+++ +   +  
Subjt:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF

Query:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
        SFWL+++YGP     R DFW EL DL GL    W VGGDFNV R   EK  D  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

A0A438K2W1 Putative ribonuclease H protein1.2e-4347.31Show/hide
Query:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF
        K LSWN +GLGS K R +++  +S QNP  V+LQETK+ T  RR + S+W    + WAAL + GASGGI+I+W    +   E + G FS+++     +  
Subjt:  KFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGF

Query:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM
        SFWL+++YGP +   R DFW EL DL GL    W VGGDFNV R   EK  +  +T NMR F+ +I E  LLD PL+N  FTWS+M
Subjt:  SFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSM

A0A6J1E2G6 uncharacterized protein LOC1110254053.9e-5551.53Show/hide
Query:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG
        MKFL+WNV+GL SWK   +IK  IS+ NP+ V+LQETK +     ++KS+WS+  I W+ALD+ G + GI+I+W+DPD    E I G+FSL+I+ C++DG
Subjt:  MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADG

Query:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCW
        F FW+S IYGP+       FWQEL DL+ L  N WI+ GDFNVTRW+WEKSN +P+T +M +FN +IE+  L+D+PL NG+ TWS      L+ C+
Subjt:  FSFWLSAIYGPTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCW

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAATTTCTCTCCTGGAATGTTCAAGGCTTGGGGTCATGGAAAAATCGGACAGTAATCAAAGCAGCTATTTCGAAGCAAAATCCTTCGTTTGTTCTCCTTCAGGAAAC
TAAGAAGACTACAACTACCAGACGGTTAATTAAATCTATATGGAGTTCATCCTTCATTGGTTGGGCAGCCCTCGACTCCATAGGAGCTTCGGGCGGGATCATTATCATGT
GGAGCGACCCGGATTACACCATTAAGGAGACTATTCGAGGTCTTTTCTCACTCTCTATTCATGTTTGTATGGCTGATGGTTTTTCTTTTTGGTTATCGGCTATCTATGGC
CCAACAGATCAAGCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCTGGTTTGGGAGGGAATTGTTGGATTGTTGGGGGAGACTTTAACGTTACTCGTTGGAC
CTGGGAGAAATCTAACGACCAGCCTATTACCAACAATATGAGAATGTTCAATAGATGGATAGAGGAGCATCAACTGTTGGATATTCCTCTACAAAATGGGCGGTTTACTT
GGTCTAGCATGGGGAAAATCGGTCTCTTACTCTGCTGGACAGATTTTTCACCACTAATGATTGTCTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAATTTCTCTCCTGGAATGTTCAAGGCTTGGGGTCATGGAAAAATCGGACAGTAATCAAAGCAGCTATTTCGAAGCAAAATCCTTCGTTTGTTCTCCTTCAGGAAAC
TAAGAAGACTACAACTACCAGACGGTTAATTAAATCTATATGGAGTTCATCCTTCATTGGTTGGGCAGCCCTCGACTCCATAGGAGCTTCGGGCGGGATCATTATCATGT
GGAGCGACCCGGATTACACCATTAAGGAGACTATTCGAGGTCTTTTCTCACTCTCTATTCATGTTTGTATGGCTGATGGTTTTTCTTTTTGGTTATCGGCTATCTATGGC
CCAACAGATCAAGCTCAAAGGGCGGATTTTTGGCAAGAGCTTCATGACTTGGCTGGTTTGGGAGGGAATTGTTGGATTGTTGGGGGAGACTTTAACGTTACTCGTTGGAC
CTGGGAGAAATCTAACGACCAGCCTATTACCAACAATATGAGAATGTTCAATAGATGGATAGAGGAGCATCAACTGTTGGATATTCCTCTACAAAATGGGCGGTTTACTT
GGTCTAGCATGGGGAAAATCGGTCTCTTACTCTGCTGGACAGATTTTTCACCACTAATGATTGTCTTTTGA
Protein sequenceShow/hide protein sequence
MKFLSWNVQGLGSWKNRTVIKAAISKQNPSFVLLQETKKTTTTRRLIKSIWSSSFIGWAALDSIGASGGIIIMWSDPDYTIKETIRGLFSLSIHVCMADGFSFWLSAIYG
PTDQAQRADFWQELHDLAGLGGNCWIVGGDFNVTRWTWEKSNDQPITNNMRMFNRWIEEHQLLDIPLQNGRFTWSSMGKIGLLLCWTDFSPLMIVF