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Lag0040918 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040918
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Genome locationchr13:9777538..9780011
RNA-Seq ExpressionLag0040918
SyntenyLag0040918
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
A0A445HQ35 Retrovirus-related Pol polyprotein from transposon RE15.1e-0435.15Show/hide
Query:  HVPFLDTIRNIKGTSVFPLMVVFLFHNMLLTFDENSFPFALSSSTSNSTPSSQTTQTLPLITPSLPQSNPSNPSHISSSSPSNPVSIPTASASLSMSVPQ
        HV F D    IK  +V    V FL  +++  F+E+SFPF+++    +S PSS  +Q L L    +P ++P+ PSH   S  S         +SLS  V  
Subjt:  HVPFLDTIRNIKGTSVFPLMVVFLFHNMLLTFDENSFPFALSSSTSNSTPSSQTTQTLPLITPSLPQSNPSNPSHISSSSPSNPVSIPTASASLSMSVPQ

Query:  ALLENNVQIPLVSSMDGSDSS--NTIPSECPP-ITNTHPMVTRGKHGIFKPKVLTVTYQETKPPT
          L+        SS+  +D S  +T+PS  PP   NTHPM TR K GI +P++       T  PT
Subjt:  ALLENNVQIPLVSSMDGSDSS--NTIPSECPP-ITNTHPMVTRGKHGIFKPKVLTVTYQETKPPT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGGGTTGGATATGGGGTCGTTATTCTCCACTCAGATGGTGTAGTGTGGGCTGCAATGGAGTCTTACGATAAAACACCTTATACACCTTTAGCAGCAGAGGTGAATGT
CATCATTCATGGTATTAGATTATTGCAACGTATGGAGGTATCAACCGCCACTGTTTTTTCGGACTCGTTATTAGCTGTCAAGATGATTCGAGCTTTCGATCCATTCCATG
TACCTTTTTTGGATACAATAAGAAACATAAAGGGTACAAGTGTCTTTCCCCTCATGGTCGTCTTTCTGTTTCACAACATGTTACTTACTTTTGATGAAAATTCTTTCCCT
TTTGCTTTGTCTTCTTCTACTTCAAATTCTACTCCTTCATCTCAAACCACTCAAACTTTACCTTTGATTACTCCATCTTTGCCTCAATCCAATCCTTCTAATCCTTCACA
TATTTCTTCATCTTCTCCTTCCAATCCTGTATCGATACCAACTGCATCTGCATCCTTAAGTATGTCTGTGCCACAAGCCCTTCTAGAGAACAATGTTCAAATACCATTGG
TTTCATCTATGGATGGTTCTGATTCATCAAATACCATACCTAGTGAATGTCCTCCTATTACTAATACTCATCCTATGGTCACTCGAGGGAAACATGGAATTTTTAAACCA
AAAGTTCTTACTGTTACTTATCAGGAGACAAAACCCCCGACCCTAATGCTCGAGAGGCTATTAAACATGCTCATTGGTGAAAGGCAATGCAAGCTGGATATAATGCATTG
A
mRNA sequenceShow/hide mRNA sequence
ATGGGGGTTGGATATGGGGTCGTTATTCTCCACTCAGATGGTGTAGTGTGGGCTGCAATGGAGTCTTACGATAAAACACCTTATACACCTTTAGCAGCAGAGGTGAATGT
CATCATTCATGGTATTAGATTATTGCAACGTATGGAGGTATCAACCGCCACTGTTTTTTCGGACTCGTTATTAGCTGTCAAGATGATTCGAGCTTTCGATCCATTCCATG
TACCTTTTTTGGATACAATAAGAAACATAAAGGGTACAAGTGTCTTTCCCCTCATGGTCGTCTTTCTGTTTCACAACATGTTACTTACTTTTGATGAAAATTCTTTCCCT
TTTGCTTTGTCTTCTTCTACTTCAAATTCTACTCCTTCATCTCAAACCACTCAAACTTTACCTTTGATTACTCCATCTTTGCCTCAATCCAATCCTTCTAATCCTTCACA
TATTTCTTCATCTTCTCCTTCCAATCCTGTATCGATACCAACTGCATCTGCATCCTTAAGTATGTCTGTGCCACAAGCCCTTCTAGAGAACAATGTTCAAATACCATTGG
TTTCATCTATGGATGGTTCTGATTCATCAAATACCATACCTAGTGAATGTCCTCCTATTACTAATACTCATCCTATGGTCACTCGAGGGAAACATGGAATTTTTAAACCA
AAAGTTCTTACTGTTACTTATCAGGAGACAAAACCCCCGACCCTAATGCTCGAGAGGCTATTAAACATGCTCATTGGTGAAAGGCAATGCAAGCTGGATATAATGCATTG
A
Protein sequenceShow/hide protein sequence
MGVGYGVVILHSDGVVWAAMESYDKTPYTPLAAEVNVIIHGIRLLQRMEVSTATVFSDSLLAVKMIRAFDPFHVPFLDTIRNIKGTSVFPLMVVFLFHNMLLTFDENSFP
FALSSSTSNSTPSSQTTQTLPLITPSLPQSNPSNPSHISSSSPSNPVSIPTASASLSMSVPQALLENNVQIPLVSSMDGSDSSNTIPSECPPITNTHPMVTRGKHGIFKP
KVLTVTYQETKPPTLMLERLLNMLIGERQCKLDIMH