; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040928 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040928
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:9942376..9948619
RNA-Seq ExpressionLag0040928
SyntenyLag0040928
Gene Ontology termsGO:0016310 - phosphorylation (biological process)
GO:0044267 - cellular protein metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0000166 - nucleotide binding (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004672 - protein kinase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8709065.1 hypothetical protein F3Y22_tig00110332pilonHSYRG00834 [Hibiscus syriacus]1.0e-3948.66Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVA------------------------VPAEEQFYTLRIEEGTKISDHLSVLN
        ++F  +   ++D+LIQSGL+KALKG+P   S+G      +  SG+ G                           V A E+F+ L++EEGTKISDHLS LN
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVA------------------------VPAEEQFYTLRIEEGTKISDHLSVLN

Query:  GIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSAL-VASNWKKNKESMQKKGCWECGHYGHM
        GI+ ELE IGVKI+DEDKALRLI SLP+SYEHM+ +LMY KE +NF+ VTSKL+SEERRLK+    S E  AL V  N KK K S +K  CW CG  GH+
Subjt:  GIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSAL-VASNWKKNKESMQKKGCWECGHYGHM

Query:  KKDCPNRACSSKGSGSDADVVSLV
        K DC N   +S  + S +DV ++V
Subjt:  KKDCPNRACSSKGSGSDADVVSLV

KAF5758504.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.4e-3858.02Show/hide
Query:  GEGGPVAVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTS
        G+G    +  +EQF+TLR++  TKISDHLSVLN I+ ELE IGVK+EDEDKALRLILSL +SYEHMKPILMYGKETL +A+VT KLLSEE+RL S G TS
Subjt:  GEGGPVAVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTS

Query:  QEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLVRGGSEF
         E + L+  N KK K   +   CW+CG  GH+K++CP  A S+  S   A+ V++V G   F
Subjt:  QEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLVRGGSEF

KAF5765959.1 putative RNA-directed DNA polymerase [Helianthus annuus]4.0e-3958.64Show/hide
Query:  GEGGPVAVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTS
        G+G P  +  +EQF+TLR++  TKISDHLSVLN I+ ELE IGVK+EDEDKALRLILSL +SYEHMKPILMYGKETL +A+VT KLLSEE+RL S G TS
Subjt:  GEGGPVAVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTS

Query:  QEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLVRGGSEF
         E + L+  N KK K   +   CW+CG  GH+K++CP  A  S  S   A+ V++V G   F
Subjt:  QEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLVRGGSEF

QHN81458.1 Retrovirus-related Pol polyprotein [Arachis hypogaea]4.4e-3843.6Show/hide
Query:  AAYIKALSLSFMRYDNAL---------EDVLIQSGLHKALKGRPSDGASESGE------------------------------------------GGPVA
        + Y  A+ L   ++D  +         +DVLIQSGLHKALK R S    E  E                                          G    
Subjt:  AAYIKALSLSFMRYDNAL---------EDVLIQSGLHKALKGRPSDGASESGE------------------------------------------GGPVA

Query:  VPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSALV
        +  +EQF+ LR++   KISDHLS +NGI+ ELE IGVKI+DEDKALRLILSLP+SYE++KP+LMYGKETLNF  V SKL++EERR+K+EG TS  D ALV
Subjt:  VPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSALV

Query:  A--SNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSL
        A   N+ K     +   CW+CG  GH+K++CP  A S K S SD   ++L
Subjt:  A--SNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSL

XP_022139673.1 uncharacterized protein LOC111010521 [Momordica charantia]6.3e-5353.91Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRPSDGASE--SGEGGPV----------------------------------------------------------
        ++F  +   ++DVLIQS LHKALKGRPS+GASE  S +GGP+                                                          
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRPSDGASE--SGEGGPV----------------------------------------------------------

Query:  ---------AVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEG
                  +  +EQF+TL++EEG KISDHLS LN II ELE I VKI+DEDKALRLILSLP SYEHMKPILMYGK+TLNFA VTSKLLSEERRLKSEG
Subjt:  ---------AVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEG

Query:  RTSQEDSALVASNWKKNKESMQKKG-CWECGHYGHMKKDCPNR
        RTS EDSALV SNWKK K+S+QKK  CW CG  GHMKKDCPNR
Subjt:  RTSQEDSALVASNWKKNKESMQKKG-CWECGHYGHMKKDCPNR

TrEMBL top hitse value%identityAlignment
A0A2P5DGF9 Zinc finger, CCHC-type6.2e-3858.22Show/hide
Query:  EEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSALVASN
        +EQF+TL + EGT ISDHLS+LNGI+ ELE IGVKI+DEDKALRLI SLP+SYEHMKPIL+YGKET+ F+ VTS LLSEERRL   G  S E S L   N
Subjt:  EEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSALVASN

Query:  WKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLV
         KK   + +   CW CG  GH+K++CP     S  S     V ++V
Subjt:  WKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLV

A0A6A3B141 CCHC-type domain-containing protein5.1e-4048.66Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVA------------------------VPAEEQFYTLRIEEGTKISDHLSVLN
        ++F  +   ++D+LIQSGL+KALKG+P   S+G      +  SG+ G                           V A E+F+ L++EEGTKISDHLS LN
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVA------------------------VPAEEQFYTLRIEEGTKISDHLSVLN

Query:  GIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSAL-VASNWKKNKESMQKKGCWECGHYGHM
        GI+ ELE IGVKI+DEDKALRLI SLP+SYEHM+ +LMY KE +NF+ VTSKL+SEERRLK+    S E  AL V  N KK K S +K  CW CG  GH+
Subjt:  GIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSAL-VASNWKKNKESMQKKGCWECGHYGHM

Query:  KKDCPNRACSSKGSGSDADVVSLV
        K DC N   +S  + S +DV ++V
Subjt:  KKDCPNRACSSKGSGSDADVVSLV

A0A6A3BK59 CCHC-type domain-containing protein4.8e-3843.73Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVAVPAE----------------------------------------------
        ++F  +   ++D+LIQSGL+KALKG+P   S+G      +  SG+ G   +  E                                              
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVAVPAE----------------------------------------------

Query:  --------EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED
                E+F+ L++EEGTKISDHLS LNGI+ ELE IGV+I+DEDKALRLI SLP+SYEHM+ +LMYGKE +NF+ VTSKL+SEERRLK+    S E 
Subjt:  --------EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED

Query:  SAL-VASNWKKNKESMQKKGCWECGHYGHMKKDCPN-RACSSKGSGSDA-DVVSLVRGGSEFL
         AL V  N KK K S +K  CW CG  GH+KKDC N  A S+ GS SDA +VV       EF+
Subjt:  SAL-VASNWKKNKESMQKKGCWECGHYGHMKKDCPN-RACSSKGSGSDA-DVVSLVRGGSEFL

A0A6A3CWI3 CCHC-type domain-containing protein2.4e-3742.97Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVAVPAE----------------------------------------------
        ++F  +   ++D+LIQSGL+KALKG+P   S+G      +  SG+ G   +  E                                              
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRP---SDG------ASESGEGGPVAVPAE----------------------------------------------

Query:  --------EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED
                E+F+ L++EEGTKISDHLS LNGI+ ELE IGV I+DEDKALRLI SLP+SYEHM+ +LMYGKE +NF+ VTSKL+SEERRLK+    S E 
Subjt:  --------EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED

Query:  SAL-VASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACS-SKGSGSDA-DVVSLVRGGSEFL
         AL V  N KK K S +K  CW CG  GH+KKDC N   + + GS SDA +VV       EF+
Subjt:  SAL-VASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACS-SKGSGSDA-DVVSLVRGGSEFL

A0A6J1CG82 uncharacterized protein LOC1110105213.1e-5353.91Show/hide
Query:  LSFMRYDNALEDVLIQSGLHKALKGRPSDGASE--SGEGGPV----------------------------------------------------------
        ++F  +   ++DVLIQS LHKALKGRPS+GASE  S +GGP+                                                          
Subjt:  LSFMRYDNALEDVLIQSGLHKALKGRPSDGASE--SGEGGPV----------------------------------------------------------

Query:  ---------AVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEG
                  +  +EQF+TL++EEG KISDHLS LN II ELE I VKI+DEDKALRLILSLP SYEHMKPILMYGK+TLNFA VTSKLLSEERRLKSEG
Subjt:  ---------AVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEG

Query:  RTSQEDSALVASNWKKNKESMQKKG-CWECGHYGHMKKDCPNR
        RTS EDSALV SNWKK K+S+QKK  CW CG  GHMKKDCPNR
Subjt:  RTSQEDSALVASNWKKNKESMQKKG-CWECGHYGHMKKDCPNR

SwissProt top hitse value%identityAlignment
P04146 Copia protein1.2e-0625.86Show/hide
Query:  EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEH-MKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED--SALVA
        ++  +L++     +  H  + + +I EL   G KIE+ DK   L+++LP+ Y+  +  I    +E L  A V ++LL +E ++K++   + +   +A+V 
Subjt:  EQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEH-MKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQED--SALVA

Query:  SN---WKKN--------------KESMQKKGCWECGHYGHMKKDC--PNRACSSKGSGSDADVVSLVRGGSEFL
        +N   +K N                S  K  C  CG  GH+KKDC    R  ++K   ++  V +    G  F+
Subjt:  SN---WKKN--------------KESMQKKGCWECGHYGHMKKDC--PNRACSSKGSGSDADVVSLVRGGSEFL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.2e-1936.6Show/hide
Query:  EEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEER----------------RLK
        ++Q Y L + EGT    HL+V NG+I +L  +GVKIE+EDKA+ L+ SLP+SY+++   +++GK T+   +VTS LL  E+                R +
Subjt:  EEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEER----------------RLK

Query:  SEGRTSQEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSG
        S  R+S       A    KN+   + + C+ C   GH K+DCPN     KG G
Subjt:  SEGRTSQEDSALVASNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTCTTGATGAAGAAGTGAATCTTAATCCCACTGCTAATCCTATGATTCCTTCGTCTGCGGTTCCTTCATCTTCTTTTGTCGTTTCTACAGCATCCCAAAGAAATTA
CACTTTACAGTTACTTGAAGAGACTGATTTCTTAACTGCCAGGCCTACTTTAGTTCCCATGGATCCAAATCTTCTCCGCCGCCACGTTCAATCGATCAGTCGCACGCTAC
CACCGCTGCCACCACGTTCAGCCGCTCAGTGGCACGCCGCTGCCGCCGTTCAGATCGATTTGTTTCTGTCTCTCAGAATCGATCATCGCTGCCATTGCCTTAAGATAAGC
AACCTCACGCAACTTGAATGTTCAACGATTTCAGCTAGTGGATGTGAGTGCGTTTGTGGTATCTTGTGGTTGGCTGGCAGTATAAGTAGACAGCTAGAAGTTATGTTTTC
TCTTATTAGAAATGTGGAATGCTGTTATGTTTCCTCATTGTCTGACCTTCCACATCAGAAAAGAATTCTAGAAATAAACTTGGGTGTTGTGAATAGTCCTGCTGCTTATA
TCAAAGCACTTTCCCTTTCCTTTATGCGCTACGATAACGCATTGGAGGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAAGACCAAGCGATGGTGCTTCT
GAAAGTGGTGAAGGTGGTCCAGTGGCGGTTCCAGCAGAGGAGCAGTTTTACACGCTGCGAATAGAGGAAGGTACGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCAT
CATTTTGGAGCTGGAGGTGATCGGAGTTAAGATAGAGGATGAGGATAAGGCACTCAGGCTTATCTTGTCACTTCCAACTTCTTATGAACACATGAAGCCAATCTTGATGT
ACGGGAAGGAAACTTTAAATTTTGCTAATGTTACTAGTAAACTCTTATCAGAAGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCCCAGGAGGATTCAGCACTAGTAGCT
AGCAATTGGAAGAAGAATAAAGAGTCCATGCAGAAGAAAGGTTGCTGGGAATGCGGACATTATGGACACATGAAAAAGGATTGTCCTAACAGAGCATGTTCGTCAAAGGG
CTCTGGGTCGGATGCTGACGTTGTCTCTCTTGTCAGGGGAGGCAGTGAATTCCTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTCTTGATGAAGAAGTGAATCTTAATCCCACTGCTAATCCTATGATTCCTTCGTCTGCGGTTCCTTCATCTTCTTTTGTCGTTTCTACAGCATCCCAAAGAAATTA
CACTTTACAGTTACTTGAAGAGACTGATTTCTTAACTGCCAGGCCTACTTTAGTTCCCATGGATCCAAATCTTCTCCGCCGCCACGTTCAATCGATCAGTCGCACGCTAC
CACCGCTGCCACCACGTTCAGCCGCTCAGTGGCACGCCGCTGCCGCCGTTCAGATCGATTTGTTTCTGTCTCTCAGAATCGATCATCGCTGCCATTGCCTTAAGATAAGC
AACCTCACGCAACTTGAATGTTCAACGATTTCAGCTAGTGGATGTGAGTGCGTTTGTGGTATCTTGTGGTTGGCTGGCAGTATAAGTAGACAGCTAGAAGTTATGTTTTC
TCTTATTAGAAATGTGGAATGCTGTTATGTTTCCTCATTGTCTGACCTTCCACATCAGAAAAGAATTCTAGAAATAAACTTGGGTGTTGTGAATAGTCCTGCTGCTTATA
TCAAAGCACTTTCCCTTTCCTTTATGCGCTACGATAACGCATTGGAGGATGTGTTGATACAATCTGGGTTACACAAGGCTTTGAAGGGAAGACCAAGCGATGGTGCTTCT
GAAAGTGGTGAAGGTGGTCCAGTGGCGGTTCCAGCAGAGGAGCAGTTTTACACGCTGCGAATAGAGGAAGGTACGAAAATCTCAGATCATCTGAGTGTTCTCAATGGCAT
CATTTTGGAGCTGGAGGTGATCGGAGTTAAGATAGAGGATGAGGATAAGGCACTCAGGCTTATCTTGTCACTTCCAACTTCTTATGAACACATGAAGCCAATCTTGATGT
ACGGGAAGGAAACTTTAAATTTTGCTAATGTTACTAGTAAACTCTTATCAGAAGAAAGAAGGCTGAAGAGTGAAGGGCGTACTTCCCAGGAGGATTCAGCACTAGTAGCT
AGCAATTGGAAGAAGAATAAAGAGTCCATGCAGAAGAAAGGTTGCTGGGAATGCGGACATTATGGACACATGAAAAAGGATTGTCCTAACAGAGCATGTTCGTCAAAGGG
CTCTGGGTCGGATGCTGACGTTGTCTCTCTTGTCAGGGGAGGCAGTGAATTCCTCTGA
Protein sequenceShow/hide protein sequence
MVLDEEVNLNPTANPMIPSSAVPSSSFVVSTASQRNYTLQLLEETDFLTARPTLVPMDPNLLRRHVQSISRTLPPLPPRSAAQWHAAAAVQIDLFLSLRIDHRCHCLKIS
NLTQLECSTISASGCECVCGILWLAGSISRQLEVMFSLIRNVECCYVSSLSDLPHQKRILEINLGVVNSPAAYIKALSLSFMRYDNALEDVLIQSGLHKALKGRPSDGAS
ESGEGGPVAVPAEEQFYTLRIEEGTKISDHLSVLNGIILELEVIGVKIEDEDKALRLILSLPTSYEHMKPILMYGKETLNFANVTSKLLSEERRLKSEGRTSQEDSALVA
SNWKKNKESMQKKGCWECGHYGHMKKDCPNRACSSKGSGSDADVVSLVRGGSEFL