; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0040932 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040932
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:9998372..10000542
RNA-Seq ExpressionLag0040932
SyntenyLag0040932
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6599977.1 hypothetical protein SDJN03_05210, partial [Cucurbita argyrosperma subsp. sororia]7.9e-0736.73Show/hide
Query:  KMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAI
        K+N  A W E    G + +V+ DS GS IC + K + R+W +K LE KA++EGLK+   I  +   +    +  +E+ + +N + +DLI+L NVV+ I
Subjt:  KMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAI

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]1.0e-0629.56Show/hide
Query:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKI
        TNLK +S++      R     +  +WK    N WK+N +A W      G IG+++RD  G +I    + I    +I  LEV AI EGL++IR    ++  
Subjt:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKI

Query:  HLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA
         + +E D +E I  ++    D  ++  ++E I    +D++ V  R+ +RE   + H +A
Subjt:  HLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA

XP_022148549.1 uncharacterized protein LOC111017181 [Momordica charantia]1.1e-0529.22Show/hide
Query:  TNLKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSI-RSICFQNKIHLEVE
        TNL    +   +N      W    Q+ WK+N+DA W++ L  G +G++VRDS G  I                    + E LK++ +S+  +  I +E+E
Subjt:  TNLKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSI-RSICFQNKIHLEVE

Query:  LDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYC---AREIQHSIA
         D +EV+  IN SS+ L ++  +VE I    + L    F++    A  + H IA
Subjt:  LDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYC---AREIQHSIA

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]1.8e-0628.67Show/hide
Query:  RWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIK
        +W+    + W +N DA W +    G IG+++R  +G ++    + +    ++K LE  AILEGL+++ ++     +H  +E D  EV   +N    DL K
Subjt:  RWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIK

Query:  LKNVVEAIATTSQDLDFVDFRYCAREIQ---HSIALCS---QKSMFFVFC
           VVE I       + + F    RE     HS+A  +   ++SM +V C
Subjt:  LKNVVEAIATTSQDLDFVDFRYCAREIQ---HSIALCS---QKSMFFVFC

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]1.2e-0731.1Show/hide
Query:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRS-----IC
        TNLK +S++      R     +  RWK    N WK+N DA W      G IG+++RD  G +I  D + I    +I  LEV AI EGL++IR      I 
Subjt:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRS-----IC

Query:  FQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA
         ++   + +E D +E I  ++    D  ++  ++E I    +D+  V  R+ +RE   + H +A
Subjt:  FQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA

TrEMBL top hitse value%identityAlignment
A0A5B7BU49 RNase H domain-containing protein (Fragment)2.1e-0531.58Show/hide
Query:  LKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDV
        +++Q  +  R Q     W    +  +K+N+ A W+ G  CG IG V+RD  G +I    K+I     I   E  AIL GL   + +  Q+   L VE D 
Subjt:  LKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDV

Query:  VEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDF---RYCAREIQHSIAL
        + V+ AI  S  DL +L +V + I          DF   R  A  + H IA+
Subjt:  VEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDF---RYCAREIQHSIAL

A0A6J1CP26 uncharacterized protein LOC1110134125.0e-0729.56Show/hide
Query:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKI
        TNLK +S++      R     +  +WK    N WK+N +A W      G IG+++RD  G +I    + I    +I  LEV AI EGL++IR    ++  
Subjt:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKI

Query:  HLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA
         + +E D +E I  ++    D  ++  ++E I    +D++ V  R+ +RE   + H +A
Subjt:  HLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA

A0A6J1D4B6 uncharacterized protein LOC1110171815.5e-0629.22Show/hide
Query:  TNLKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSI-RSICFQNKIHLEVE
        TNL    +   +N      W    Q+ WK+N+DA W++ L  G +G++VRDS G  I                    + E LK++ +S+  +  I +E+E
Subjt:  TNLKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSI-RSICFQNKIHLEVE

Query:  LDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYC---AREIQHSIA
         D +EV+  IN SS+ L ++  +VE I    + L    F++    A  + H IA
Subjt:  LDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYC---AREIQHSIA

A0A6J1DNV9 uncharacterized protein LOC1110224038.5e-0728.67Show/hide
Query:  RWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIK
        +W+    + W +N DA W +    G IG+++R  +G ++    + +    ++K LE  AILEGL+++ ++     +H  +E D  EV   +N    DL K
Subjt:  RWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIK

Query:  LKNVVEAIATTSQDLDFVDFRYCAREIQ---HSIALCS---QKSMFFVFC
           VVE I       + + F    RE     HS+A  +   ++SM +V C
Subjt:  LKNVVEAIATTSQDLDFVDFRYCAREIQ---HSIALCS---QKSMFFVFC

A0A6J1DSV1 uncharacterized protein LOC1110236085.9e-0831.1Show/hide
Query:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRS-----IC
        TNLK +S++      R     +  RWK    N WK+N DA W      G IG+++RD  G +I  D + I    +I  LEV AI EGL++IR      I 
Subjt:  TNLKRQSSS------RPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIKSLEVKAILEGLKSIRS-----IC

Query:  FQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA
         ++   + +E D +E I  ++    D  ++  ++E I    +D+  V  R+ +RE   + H +A
Subjt:  FQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCARE---IQHSIA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGTCAGCAAGCAGAACGGTAGGGAGTGGAAAAGTGAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTAGGGATAGAATTCGGGTCCCCCTCTTTAG
TGGCGAAGAGGGGTATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGCGGAACCGGGGCGGCCAAAGGCGGTGGGGACCA
AATGGAGTCGGACGGGCTCGGCCCGAGCGAGTGGGCCGAGGGTCGGCCTCGGCCAGGCCGAGCAGGGAGTCGGGCCAAAAACCCGACCCCTTCGGTCTCGGCCCGCCCCA
CTTGCCGGTTTCGCCTCCTGGGTCCAACTCCCAGTCCGATTTCTCTCCGATTGTCCTCGTCAGCTCCTTGTACATCGGAGTGGTCCAAAATTGCCTATAACATATAAAAG
AGAAAGAACAAATCTGAAGCGCCAAAGTTCGAGCAGGCCGAGGAACCAAGCAAGTCAGAATCGGTGGAAAAAGTCTATGCAAAATCGTTGGAAGATGAACATCGATGCTT
TGTGGATTGAGGGTCTCAAATGCGGCGACATTGGCTATGTGGTTCGTGACTCAAATGGATCCCTGATCTGTTTCGACATGAAAAGAATTAGTAGAAGATGGAGCATCAAA
TCGCTAGAAGTAAAAGCGATCCTTGAAGGCCTTAAGAGTATTAGATCTATCTGTTTTCAAAACAAGATTCATCTGGAGGTGGAATTGGATGTGGTTGAAGTCATTCAGGC
CATCAATGGCTCCTCTGTTGATCTCATCAAGCTGAAGAATGTTGTGGAAGCCATTGCCACGACATCTCAAGATCTCGATTTTGTGGATTTTCGTTACTGTGCGAGGGAAA
TCCAACACAGTATCGCACTTTGTAGCCAAAAGAGCATGTTTTTTGTCTTCTGTTCCTCGCTTGAGTCCTTCCTCTTCGTTGGAGAAAGGCGAGATTTTTTGGGCTCCAAA
TGTGCCAGACTAGATTTTCCATCTAATTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGTCAGCAAGCAGAACGGTAGGGAGTGGAAAAGTGAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTAGGGATAGAATTCGGGTCCCCCTCTTTAG
TGGCGAAGAGGGGTATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGCGGAACCGGGGCGGCCAAAGGCGGTGGGGACCA
AATGGAGTCGGACGGGCTCGGCCCGAGCGAGTGGGCCGAGGGTCGGCCTCGGCCAGGCCGAGCAGGGAGTCGGGCCAAAAACCCGACCCCTTCGGTCTCGGCCCGCCCCA
CTTGCCGGTTTCGCCTCCTGGGTCCAACTCCCAGTCCGATTTCTCTCCGATTGTCCTCGTCAGCTCCTTGTACATCGGAGTGGTCCAAAATTGCCTATAACATATAAAAG
AGAAAGAACAAATCTGAAGCGCCAAAGTTCGAGCAGGCCGAGGAACCAAGCAAGTCAGAATCGGTGGAAAAAGTCTATGCAAAATCGTTGGAAGATGAACATCGATGCTT
TGTGGATTGAGGGTCTCAAATGCGGCGACATTGGCTATGTGGTTCGTGACTCAAATGGATCCCTGATCTGTTTCGACATGAAAAGAATTAGTAGAAGATGGAGCATCAAA
TCGCTAGAAGTAAAAGCGATCCTTGAAGGCCTTAAGAGTATTAGATCTATCTGTTTTCAAAACAAGATTCATCTGGAGGTGGAATTGGATGTGGTTGAAGTCATTCAGGC
CATCAATGGCTCCTCTGTTGATCTCATCAAGCTGAAGAATGTTGTGGAAGCCATTGCCACGACATCTCAAGATCTCGATTTTGTGGATTTTCGTTACTGTGCGAGGGAAA
TCCAACACAGTATCGCACTTTGTAGCCAAAAGAGCATGTTTTTTGTCTTCTGTTCCTCGCTTGAGTCCTTCCTCTTCGTTGGAGAAAGGCGAGATTTTTTGGGCTCCAAA
TGTGCCAGACTAGATTTTCCATCTAATTAA
Protein sequenceShow/hide protein sequence
MLKSASRTVGSGKVRARGESREYRIVFRDRIRVPLFSGEEGYKYLLILLGFLGIRRRFRSNQAEPGRPKAVGTKWSRTGSARASGPRVGLGQAEQGVGPKTRPLRSRPAP
LAGFASWVQLPVRFLSDCPRQLLVHRSGPKLPITYKRERTNLKRQSSSRPRNQASQNRWKKSMQNRWKMNIDALWIEGLKCGDIGYVVRDSNGSLICFDMKRISRRWSIK
SLEVKAILEGLKSIRSICFQNKIHLEVELDVVEVIQAINGSSVDLIKLKNVVEAIATTSQDLDFVDFRYCAREIQHSIALCSQKSMFFVFCSSLESFLFVGERRDFLGSK
CARLDFPSN