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Lag0040940 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0040940
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr13:10036886..10038683
RNA-Seq ExpressionLag0040940
SyntenyLag0040940
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046503.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.5e-0762.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE  +PA ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
KAA0050719.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-0762.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
KAA0059158.1 Transducin/WD40 repeat-like superfamily protein [Cucumis melo var. makuwa]8.6e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LPA ++E +++ MD++AYS+I+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
TYK11792.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.9e-0762.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
TYK25306.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.9e-0762.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
TrEMBL top hitse value%identityAlignment
A0A5A7UB25 Putative gag-pol polyprotein9.2e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
A0A5A7UVB6 Transducin/WD40 repeat-like superfamily protein4.1e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LPA ++E +++ MD++AYS+I+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
A0A5D3BRV3 Retrovirus-related Pol polyprotein from transposon TNT 1-947.1e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE  +PA ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
A0A5D3CQJ5 Retrovirus-related Pol polyprotein from transposon TNT 1-949.2e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
A0A5D3DNU1 Putative gag-pol polyprotein9.2e-0862.5Show/hide
Query:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
        KI+A+LVQ KVAKIL DE+ LP  ++E +++ MD++AYSTI+LYLSD VLR V+EA
Subjt:  KIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEA
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAACCTCTCTGAGGTGCTTAAAGTTAAAAGTGGAGTCTGACTCAGTCTTGGCAGTCAATTTTATTAATAAAAAAGCTGAAGTATGGTATGCTGTGGAAGCCATTGT
GGAGGAGATTTTGAGTTATTCTAAGATTAAAGCTCTTTTGGTGCAACAAAAAGTAGCTAAAATCTTGGGTGATGAAAAGGACCTTCCGGCGACACTCTCAGAAGATGATA
GGAAGAAAATGGATAAGATTGCCTATTCGACCATTATACTCTATCTCTCAGATGGAGTGCTTAGGCAAGTGAATGAGGCCCGATCGCCACATGGCAATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAACCTCTCTGAGGTGCTTAAAGTTAAAAGTGGAGTCTGACTCAGTCTTGGCAGTCAATTTTATTAATAAAAAAGCTGAAGTATGGTATGCTGTGGAAGCCATTGT
GGAGGAGATTTTGAGTTATTCTAAGATTAAAGCTCTTTTGGTGCAACAAAAAGTAGCTAAAATCTTGGGTGATGAAAAGGACCTTCCGGCGACACTCTCAGAAGATGATA
GGAAGAAAATGGATAAGATTGCCTATTCGACCATTATACTCTATCTCTCAGATGGAGTGCTTAGGCAAGTGAATGAGGCCCGATCGCCACATGGCAATATCTGA
Protein sequenceShow/hide protein sequence
MATSLRCLKLKVESDSVLAVNFINKKAEVWYAVEAIVEEILSYSKIKALLVQQKVAKILGDEKDLPATLSEDDRKKMDKIAYSTIILYLSDGVLRQVNEARSPHGNI