CuGenDBv2

Gene ID	Lag0040957
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	protein IQ-DOMAIN 1-like
Genome location	chr13:10212624..10216421
RNA-Seq Expression	Lag0040957
Synteny	Lag0040957
Gene Ontology terms	GO:0003723 - RNA binding (molecular function) GO:0005516 - calmodulin binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

ADN34116.1 heterogeneous nuclear ribonucleoprotein a1 [Cucumis melo subsp. melo]

2.3e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

TYK03903.1 protein IQ-DOMAIN 1-like [Cucumis melo var. makuwa]

2.3e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

XP_008462345.1 PREDICTED: protein IQ-DOMAIN 1-like [Cucumis melo]

2.3e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

XP_011659642.1 protein gar2 [Cucumis sativus]

2.3e-26

87.34

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TKR F ESTESHDSKLLANAVAAVARAPLKDFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

XP_038898204.1 protein gar2-like [Benincasa hispida]

2.8e-27

87.34

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDR+KKKW    S+SDGYGSSGK+TK+EFVESTESHDSKLLANAVAAVARAPLKDFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

TrEMBL top hits

e value

%identity

Alignment

A0A0A0K7V8 Uncharacterized protein

1.1e-26

87.34

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TKR F ESTESHDSKLLANAVAAVARAPLKDFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

A0A1S3CGP9 protein IQ-DOMAIN 1-like

1.1e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

A0A5A7UU27 Heterogeneous nuclear ribonucleoprotein a1

1.1e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

A0A5D3BVY1 Protein IQ-DOMAIN 1-like

1.1e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

E5GCB7 Heterogeneous nuclear ribonucleoprotein a1

1.1e-26

86.08

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Query:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EKVGDRSKKKW    S+SDGYGSSGK+TK EF ESTESHDSKLLANAVAAVARAPL+DFVVVR+HWAAVRIQT FRGFL
Subjt:  EKVGDRSKKKW----SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

SwissProt top hits

e value

%identity

Alignment

O64852 Protein IQ-DOMAIN 6

1.4e-05

44.87

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Query:  GDRSKKKW------SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        G+   KKW      S+    G  GK       +S     S + + AVA V RAP KDF  VR  WAA+RIQTAFRGFL
Subjt:  GDRSKKKW------SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

Q2NND9 Protein IQ-DOMAIN 7

4.0e-05

37.21

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Query:  EKVGDR-SKKKWSI----SDGYGSSGKMTKREFVESTESHD------SKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EK+ D+ SKKKW +    S+   SS   ++  +  S+   +       +    A+AA+ RAP +DF++V+R WA+ RIQ AFR FL
Subjt:  EKVGDR-SKKKWSI----SDGYGSSGKMTKREFVESTESHD------SKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

Q9CAI2 Protein IQ-DOMAIN 8

2.8e-06

42.06

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Query:  GRWQRFLFLTEREKVTADSEKD-NSNMRLW-SEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQ
        G W + L +T ++ +T D EK+     +LW +   G  S  K   S G GS G  +      S  + DS     AVAAV RAP KDF +V+R WAA RIQ
Subjt:  GRWQRFLFLTEREKVTADSEKD-NSNMRLW-SEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQ

Query:  TAFRGFL
         AFR FL
Subjt:  TAFRGFL

Arabidopsis top hits

e value

%identity

Alignment

AT1G17480.1 IQ-domain 7

2.9e-06

37.21

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Query:  EKVGDR-SKKKWSI----SDGYGSSGKMTKREFVESTESHD------SKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        EK+ D+ SKKKW +    S+   SS   ++  +  S+   +       +    A+AA+ RAP +DF++V+R WA+ RIQ AFR FL
Subjt:  EKVGDR-SKKKWSI----SDGYGSSGKMTKREFVESTESHD------SKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

AT1G72670.1 IQ-domain 8

2.0e-07

42.06

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Query:  GRWQRFLFLTEREKVTADSEKD-NSNMRLW-SEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQ
        G W + L +T ++ +T D EK+     +LW +   G  S  K   S G GS G  +      S  + DS     AVAAV RAP KDF +V+R WAA RIQ
Subjt:  GRWQRFLFLTEREKVTADSEKD-NSNMRLW-SEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQ

Query:  TAFRGFL
         AFR FL
Subjt:  TAFRGFL

AT2G26180.1 IQ-domain 6

9.8e-07

44.87

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Query:  GDRSKKKW------SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL
        G+   KKW      S+    G  GK       +S     S + + AVA V RAP KDF  VR  WAA+RIQTAFRGFL
Subjt:  GDRSKKKW------SISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRGFL

Sequences

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CDS sequence

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ATGACGCGATCAAAGAGGAGAGGGCGGTGGCAGCGCTTCCTGTTCTTGACCGAGAGGGAGAAAGTGACGGCGGATAGCGAGAAAGACAACTCCAACATGAGATTATGGTC
CGAGAAAGTTGGAGATCGGAGCAAGAAGAAATGGAGTATATCTGATGGGTATGGATCTTCGGGTAAAATGACGAAGAGGGAGTTTGTTGAATCAACAGAATCGCACGATT
CGAAGCTTTTGGCTAATGCTGTGGCTGCAGTTGCTCGAGCTCCATTGAAGGATTTTGTGGTGGTGAGGCGGCATTGGGCCGCCGTTCGAATCCAGACGGCATTTCGTGGC
TTCTTGGAATCCCTTTTAATCTGGTCTGTTGTACAGTTTGTTTTAGTGAAAATTGAATGGAGTGACTATGTTTGTGTCGCCGGCGGCGGCGGCGGCGTGTGGTGGTCGCC
GGTCGCCGGACTTAGGAAGAAGAAGAAGGAGAAGGGAGAAGATGGAGAAAAGGAAGATGGAGAAGAAGAAGATGAGAGAGAAGGAGAGAAAGAATAA

mRNA sequence

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Protein sequence

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MTRSKRRGRWQRFLFLTEREKVTADSEKDNSNMRLWSEKVGDRSKKKWSISDGYGSSGKMTKREFVESTESHDSKLLANAVAAVARAPLKDFVVVRRHWAAVRIQTAFRG
FLESLLIWSVVQFVLVKIEWSDYVCVAGGGGGVWWSPVAGLRKKKKEKGEDGEKEDGEEEDEREGEKE

Lag0040957 (gene) of Sponge gourd (AG-4) v1 genome