| GenBank top hits | e value | %identity | Alignment |
|---|
| CAN71138.1 hypothetical protein VITISV_008660 [Vitis vinifera] | 7.6e-58 | 26.97 | Show/hide |
Query: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEY-------LGKISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFN-----------
P E D NWYPD GA+NH+T++ N+ S E+ +G +VS+FA+D VFFEFH C VK T+ L+ G + +GLY F+
Subjt: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEY-------LGKISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFN-----------
Query: -------------------------------------------LPKPLSSPNTIVSQPKSN-------------------------------------NF
L K L P ++S F
Subjt: -------------------------------------------LPKPLSSPNTIVSQPKSN-------------------------------------NF
Query: GKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQ
I SLQT+ G EF+ F L +GI HRVSCP+T QQNG+ E KHR IV GLTLL + +PL FWD+ F T V+L NRLP+ VL +E LF+
Subjt: GKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQ
Query: PDYSTLKVFGCS------------------------------------------------HPIVTRSKVGIFKPKAYLT--------------TFVDIEP
PDYS LKVFGCS HP++TR+K GI KPK L + E
Subjt: PDYSTLKVFGCS------------------------------------------------HPIVTRSKVGIFKPKAYLT--------------TFVDIEP
Query: P-------KVKEVFKCSHWKNAIQ--DEYDALIKNNTWDLVPTP------LNQKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQF
P K + V K H + + + ++K +T +V T +++D+NN FL+G L E V+M QP GF + +LVCRL KALYGLKQ
Subjt: P-------KVKEVFKCSHWKNAIQ--DEYDALIKNNTWDLVPTP------LNQKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQF
Query: PWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSILSARFLGTSIWDSWKPKNRAEQRLGRLKQRERSGNQPIVRGDRDGDVRRWARF
P AWFE+L L S F+++K+D SL R T Y+ + +++ + + ++ K + G DGD
Subjt: PWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSILSARFLGTSIWDSWKPKNRAEQRLGRLKQRERSGNQPIVRGDRDGDVRRWARF
Query: GLIYGIYAIDVIYACVIGISDSIAYGRI-ITKMVDANPITTPMVSGPLL--SAHQDWASDLDDRKSTSGFCVF---------------------------
++G Y +G + R ++ V+ + + S +L DWASDLDDR+STSG CVF
Subjt: GLIYGIYAIDVIYACVIGISDSIAYGRI-ITKMVDANPITTPMVSGPLL--SAHQDWASDLDDRKSTSGFCVF---------------------------
Query: --------------------------------------FVVTSLHGDLRN-------------RRSLNVQHLPTSDQIVDVLTNLLSAVNFLKLRSKLNV
+ LH ++ R+ + V+H+P++DQ+ DV T + + F++ R KL +
Subjt: --------------------------------------FVVTSLHGDLRN-------------RRSLNVQHLPTSDQIVDVLTNLLSAVNFLKLRSKLNV
Query: REPSSIGLRGGV
S++ LRG V
Subjt: REPSSIGLRGGV
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| KAG8480454.1 hypothetical protein CXB51_024676 [Gossypium anomalum] | 4.4e-58 | 29.53 | Show/hide |
Query: ISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFNLPK----PLSSP--------------NTIVSQPKSN--------------NFGKP
ISV QFA+D V+FEFHP C VKD+ TR+ LL G +H+GLY+F+L + + SP ++ + P SN N G P
Subjt: ISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFNLPK----PLSSP--------------NTIVSQPKSN--------------NFGKP
Query: I-----------------------LSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLIN
+ +T+GG EF+ L G+ HRV+CPYTS+QNG+VER+HRHIV++GLTLL+ +S+PL +W D FS + LIN
Subjt: I-----------------------LSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLIN
Query: RLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------------------------
RLP+ VL SP EKL++ QPDY+ L+ + C
Subjt: RLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------------------------
Query: ---------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDA
HP+ TRSK GIFKP+ + + + EP + E F+ + W A + EY A
Subjt: ---------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDA
Query: LIKNNTWDLVPTPLN-------------------------------------------------------------------QKIDINNVFLHGILSETV
LI N+TWDLVP P +++D+NN FL+G L E +
Subjt: LIKNNTWDLVPTPLN-------------------------------------------------------------------QKIDINNVFLHGILSETV
Query: YMDQPAGF--HVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSI
YM QP GF H G LVCRL KALYGLKQ P AWF +L FL + F+ SKAD SL R++G T+F Y+ +
Subjt: YMDQPAGF--HVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSI
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| KAG8491907.1 hypothetical protein CXB51_015260 [Gossypium anomalum] | 2.6e-58 | 30.32 | Show/hide |
Query: PPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEYLGK-------------------------------------------ISVSQFARDTVVFFEFHPTFC
P V D WYPDSGATNH+T N+ S Y G +SV QFA+D VV+FEFHP FC
Subjt: PPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEYLGK-------------------------------------------ISVSQFARDTVVFFEFHPTFC
Query: VVKDLATRQALLQGTLHEGLYKFNL--------------PKP-----------------LSSP--NTIVSQPKSNN--------FGKPILSLQTNGGAEF
VKD+ TR+ LL G +H GLYKF+ P P L P N +V +S N FG I LQT+ G E+
Subjt: VVKDLATRQALLQGTLHEGLYKFNL--------------PKP-----------------LSSP--NTIVSQPKSNN--------FGKPILSLQTNGGAEF
Query: KRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPS-------------------------------
+ + L GI HRV+ P+TS+QNG+VERKHRH+VD+GLT+L+ +S+ L FW F+ +V L+N LP+
Subjt: KRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPS-------------------------------
Query: ---------------------IVLGG------------LSPLEKLF----QKQPDYSTLKV--------------------FGCSHPIVTRSKVGIFKPK
+V+G SP+++ F + P Y + + G HP+ TRSK GIFKPK
Subjt: ---------------------IVLGG------------LSPLEKLF----QKQPDYSTLKV--------------------FGCSHPIVTRSKVGIFKPK
Query: AYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK--------------------------------------------------
+ +T + EP + E + WK A EY+AL+ N+T DL+P P ++K
Subjt: AYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK--------------------------------------------------
Query: -----------------IDINNVFLHGILSETVYMDQPAGFHV--KGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
+DINN FL+G L E +YM QP GF G LVC+L KALYGLKQ P AWF +L FL + F SKAD SL RSG
Subjt: -----------------IDINNVFLHGILSETVYMDQPAGFHV--KGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
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| RVW87716.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 4.8e-60 | 29.07 | Show/hide |
Query: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
E +QD NWYPDSGAT+HLT +L N+ S++ GK +SVS+FA D VFFEFHPT
Subjt: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
Query: CVVKDLATRQALLQGTL------------------------------HEG-------LYKFNLP-------------------------------KPLSS
C VKDL+TR L+ G L H L K NLP KPL
Subjt: CVVKDLATRQALLQGTL------------------------------HEG-------LYKFNLP-------------------------------KPLSS
Query: PNTIVSQPKSN-------------------------NFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSS
+T + P S N I ++Q++ G E++ F L ++GI HR+SCPYT +QNG+ ERKHRHIV+ G+ LL+ +S
Subjt: PNTIVSQPKSN-------------------------NFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSS
Query: MPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------
+P +WD+ F TSV+LINRLP+ VL SPLE LF ++P YS LKVFGC
Subjt: MPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------
Query: ----------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYD
SH ++TRSK GIFKPKAYL + P V E + SHWK A+ DEY
Subjt: ----------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYD
Query: ALIKNNTWDLVPTPLNQK-------------------------------------------------------------------IDINNVFLHGILSET
AL++NNTWDLVP P ++K +D+NN FL+G L E
Subjt: ALIKNNTWDLVPTPLNQK-------------------------------------------------------------------IDINNVFLHGILSET
Query: VYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
++M QP GF + VC+L K+LYGLKQ P AWFE+L L L F ++K+D SL
Subjt: VYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
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| RVX03305.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | 5.8e-58 | 28.17 | Show/hide |
Query: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
E +QD NWY DSGAT+HLT +L N+ S++ GK +SVS+FA D VFFEFHPT
Subjt: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
Query: CVVKDLATRQALLQGTLHEGLYKFN---LPKPL------------SSPNTIVSQPKS------NNFGKP-------------------------------
C VKDL+TR L+ L GLY F+ L PL S T+ + P S N G P
Subjt: CVVKDLATRQALLQGTLHEGLYKFN---LPKPL------------SSPNTIVSQPKS------NNFGKP-------------------------------
Query: --------------------------------ILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDV
I ++Q++ G E++ F L ++GI HR+SCPYT +QNG+ ERKHRHIV+ G+ LL+ +S+P +WD+
Subjt: --------------------------------ILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDV
Query: FSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC------------------------------------------------------------
F TSV+LINRLP+ VL SPLE LF ++P YS LKVFGC
Subjt: FSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC------------------------------------------------------------
Query: ------------------------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVF
SH ++TRSK GIFKPKAYL + P V E
Subjt: ------------------------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVF
Query: KCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK-------------------------------------------------------------------I
+ SHWK + DEY AL++NNTWDLVP P ++K +
Subjt: KCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK-------------------------------------------------------------------I
Query: DINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
D+NN FL+G L E ++M QP GF + VC+L K+LYGLKQ P AWFE+L L L F ++K+D SL
Subjt: DINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438FHJ8 Retrovirus-related Pol polyprotein from transposon RE2 | 5.9e-56 | 41.82 | Show/hide |
Query: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEYLGKISVSQF------ARDTVVFFEFHPTFCVVKDLATR--QALLQGTLHEGLYKFNLPKPLSSPNT
P E D NWY +SGA+NH+T + NM S+E+ + V+Q RD + F+ LA R Q+LL+ L L F L + T
Subjt: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEYLGKISVSQF------ARDTVVFFEFHPTFCVVKDLATR--QALLQGTLHEGLYKFNLPKPLSSPNT
Query: IVS--QPKSNNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLG
V+ F I SLQTN G EF+ F L +GI HRVSCP T QQNG+VERKHR IV+ GLTLL +S+PL FWD+ F V+L NRLP++VL
Subjt: IVS--QPKSNNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLG
Query: GLSPLEKLFQKQPDYSTLKVFGCS----------HPIVTRSKVGIF-----KPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTP
P+E LF+ PDYS LKVFGCS H + RS+ F K K Y EP V + WK A+ EYDAL +NNTW LV P
Subjt: GLSPLEKLFQKQPDYSTLKVFGCS----------HPIVTRSKVGIF-----KPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTP
Query: -----------------LN---QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWA
+N +K+D+NNVFL+ L E V+M QP GF + +LVC+L KALYGLKQ P A
Subjt: -----------------LN---QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWA
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| A0A438HTD6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.3e-60 | 29.07 | Show/hide |
Query: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
E +QD NWYPDSGAT+HLT +L N+ S++ GK +SVS+FA D VFFEFHPT
Subjt: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
Query: CVVKDLATRQALLQGTL------------------------------HEG-------LYKFNLP-------------------------------KPLSS
C VKDL+TR L+ G L H L K NLP KPL
Subjt: CVVKDLATRQALLQGTL------------------------------HEG-------LYKFNLP-------------------------------KPLSS
Query: PNTIVSQPKSN-------------------------NFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSS
+T + P S N I ++Q++ G E++ F L ++GI HR+SCPYT +QNG+ ERKHRHIV+ G+ LL+ +S
Subjt: PNTIVSQPKSN-------------------------NFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSS
Query: MPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------
+P +WD+ F TSV+LINRLP+ VL SPLE LF ++P YS LKVFGC
Subjt: MPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC---------------------------------------------------
Query: ----------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYD
SH ++TRSK GIFKPKAYL + P V E + SHWK A+ DEY
Subjt: ----------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYD
Query: ALIKNNTWDLVPTPLNQK-------------------------------------------------------------------IDINNVFLHGILSET
AL++NNTWDLVP P ++K +D+NN FL+G L E
Subjt: ALIKNNTWDLVPTPLNQK-------------------------------------------------------------------IDINNVFLHGILSET
Query: VYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
++M QP GF + VC+L K+LYGLKQ P AWFE+L L L F ++K+D SL
Subjt: VYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
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| A0A438J300 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.8e-58 | 28.17 | Show/hide |
Query: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
E +QD NWY DSGAT+HLT +L N+ S++ GK +SVS+FA D VFFEFHPT
Subjt: EKVQDCNWYPDSGATNHLTNSLGNMFVSSEY---------LGK-------------------------------------ISVSQFARDTVVFFEFHPTF
Query: CVVKDLATRQALLQGTLHEGLYKFN---LPKPL------------SSPNTIVSQPKS------NNFGKP-------------------------------
C VKDL+TR L+ L GLY F+ L PL S T+ + P S N G P
Subjt: CVVKDLATRQALLQGTLHEGLYKFN---LPKPL------------SSPNTIVSQPKS------NNFGKP-------------------------------
Query: --------------------------------ILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDV
I ++Q++ G E++ F L ++GI HR+SCPYT +QNG+ ERKHRHIV+ G+ LL+ +S+P +WD+
Subjt: --------------------------------ILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDV
Query: FSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC------------------------------------------------------------
F TSV+LINRLP+ VL SPLE LF ++P YS LKVFGC
Subjt: FSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGC------------------------------------------------------------
Query: ------------------------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVF
SH ++TRSK GIFKPKAYL + P V E
Subjt: ------------------------------------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVF
Query: KCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK-------------------------------------------------------------------I
+ SHWK + DEY AL++NNTWDLVP P ++K +
Subjt: KCSHWKNAIQDEYDALIKNNTWDLVPTPLNQK-------------------------------------------------------------------I
Query: DINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
D+NN FL+G L E ++M QP GF + VC+L K+LYGLKQ P AWFE+L L L F ++K+D SL
Subjt: DINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSL
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| A0A803NRU8 Uncharacterized protein | 7.7e-56 | 28.77 | Show/hide |
Query: QDCNWYPDSGATNHLTNSLGNMFVSSEYLGK---------------------------------------------ISVSQFARDTVVFFEFHPTFCVVK
+DCNWYPDSGATNH T L N+ ++EY G+ +SVS+FARD V FEFH C VK
Subjt: QDCNWYPDSGATNHLTNSLGNMFVSSEYLGK---------------------------------------------ISVSQFARDTVVFFEFHPTFCVVK
Query: DLATRQALLQGTLHEGLYKFN------LPKPLSSPN-TIVSQPKSNNF------------------------------------------GKPILSLQTN
D T+ LL GTLH GLY F+ LP S N I+ + SN F GK I Q++
Subjt: DLATRQALLQGTLHEGLYKFN------LPKPLSSPN-TIVSQPKSNNF------------------------------------------GKPILSLQTN
Query: GGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFG
G E++ F L+ GI HR CP T +QNG+VERKHR IV+ GL+LL+ +SMPL FWD+ F +V+L NRLP+ VL LSP+E LF +PDY LK+FG
Subjt: GGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFG
Query: C---------------------------------------------------------------------------------------------------
C
Subjt: C---------------------------------------------------------------------------------------------------
Query: ----------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVP
+H + TR+K GI+KPKA L V EP VK K W NA+ +E AL KN TW VP
Subjt: ----------------------------------------SHPIVTRSKVGIFKPKAYLTTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVP
Query: TP---------------LN----------------------------------------------------QKIDINNVFLHGILSETVYMDQPAGFHVK
P LN Q++D+NN FL+G L E VYM QP GF +
Subjt: TP---------------LN----------------------------------------------------QKIDINNVFLHGILSETVYMDQPAGFHVK
Query: GATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRS
A LVC+L KALYGLKQ P AWF +L L++ F +SK+D SL + +
Subjt: GATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRS
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| A5AD69 Integrase catalytic domain-containing protein | 3.7e-58 | 26.97 | Show/hide |
Query: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEY-------LGKISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFN-----------
P E D NWYPD GA+NH+T++ N+ S E+ +G +VS+FA+D VFFEFH C VK T+ L+ G + +GLY F+
Subjt: PPPEKVQDCNWYPDSGATNHLTNSLGNMFVSSEY-------LGKISVSQFARDTVVFFEFHPTFCVVKDLATRQALLQGTLHEGLYKFN-----------
Query: -------------------------------------------LPKPLSSPNTIVSQPKSN-------------------------------------NF
L K L P ++S F
Subjt: -------------------------------------------LPKPLSSPNTIVSQPKSN-------------------------------------NF
Query: GKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQ
I SLQT+ G EF+ F L +GI HRVSCP+T QQNG+ E KHR IV GLTLL + +PL FWD+ F T V+L NRLP+ VL +E LF+
Subjt: GKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQKQ
Query: PDYSTLKVFGCS------------------------------------------------HPIVTRSKVGIFKPKAYLT--------------TFVDIEP
PDYS LKVFGCS HP++TR+K GI KPK L + E
Subjt: PDYSTLKVFGCS------------------------------------------------HPIVTRSKVGIFKPKAYLT--------------TFVDIEP
Query: P-------KVKEVFKCSHWKNAIQ--DEYDALIKNNTWDLVPTP------LNQKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQF
P K + V K H + + + ++K +T +V T +++D+NN FL+G L E V+M QP GF + +LVCRL KALYGLKQ
Subjt: P-------KVKEVFKCSHWKNAIQ--DEYDALIKNNTWDLVPTP------LNQKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQF
Query: PWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSILSARFLGTSIWDSWKPKNRAEQRLGRLKQRERSGNQPIVRGDRDGDVRRWARF
P AWFE+L L S F+++K+D SL R T Y+ + +++ + + ++ K + G DGD
Subjt: PWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLIRLDATTKFCYLSILSARFLGTSIWDSWKPKNRAEQRLGRLKQRERSGNQPIVRGDRDGDVRRWARF
Query: GLIYGIYAIDVIYACVIGISDSIAYGRI-ITKMVDANPITTPMVSGPLL--SAHQDWASDLDDRKSTSGFCVF---------------------------
++G Y +G + R ++ V+ + + S +L DWASDLDDR+STSG CVF
Subjt: GLIYGIYAIDVIYACVIGISDSIAYGRI-ITKMVDANPITTPMVSGPLL--SAHQDWASDLDDRKSTSGFCVF---------------------------
Query: --------------------------------------FVVTSLHGDLRN-------------RRSLNVQHLPTSDQIVDVLTNLLSAVNFLKLRSKLNV
+ LH ++ R+ + V+H+P++DQ+ DV T + + F++ R KL +
Subjt: --------------------------------------FVVTSLHGDLRN-------------RRSLNVQHLPTSDQIVDVLTNLLSAVNFLKLRSKLNV
Query: REPSSIGLRGGV
S++ LRG V
Subjt: REPSSIGLRGGV
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.1e-06 | 37.04 | Show/hide |
Query: KIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLI
++D+ FL+G L E +YM P G + + VC+L KA+YGLKQ WFE L F+NS D + G I
Subjt: KIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSGLI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.8e-14 | 43.59 | Show/hide |
Query: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRR
+++D+ FLHG L E +YM+QP GF V G +VC+L K+LYGLKQ P W+ + F+ S +L + +DP + F+R
Subjt: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRR
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.8e-14 | 36.28 | Show/hide |
Query: GKPILSLQTNGGAEF--KRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQ
G+ + L+++ G E+ + F +HGI H + P T Q NG+ ER +R IV+ ++L + +P +FW + T+ +LINR PS+ L P
Subjt: GKPILSLQTNGGAEF--KRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLFQ
Query: KQPDYSTLKVFGC
K+ YS LKVFGC
Subjt: KQPDYSTLKVFGC
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| P92520 Uncharacterized mitochondrial protein AtMg00820 | 2.4e-06 | 48.53 | Show/hide |
Query: IVTRSKVGIFK--PKAYL--TTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTPLNQKI
++TRSK GI K PK L TT + EP V K W A+Q+E DAL +N TW LVP P+NQ I
Subjt: IVTRSKVGIFK--PKAYL--TTFVDIEPPKVKEVFKCSHWKNAIQDEYDALIKNNTWDLVPTPLNQKI
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.0e-25 | 47.83 | Show/hide |
Query: NNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLF
N F I + ++ G EF HGI+H S P+T + NG+ ERKHRHIV+ GLTLLSH+S+P T+W F+ +V+LINRLP+ +L SP +KLF
Subjt: NNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDDVFSTSVFLINRLPSIVLGGLSPLEKLF
Query: QKQPDYSTLKVFGCS
P+Y L+VFGC+
Subjt: QKQPDYSTLKVFGCS
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 9.1e-14 | 47.5 | Show/hide |
Query: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
+++D+NN FL G L++ VYM QP GF K + VC+L KALYGLKQ P AW+ L +L ++ F+NS +D SL + G
Subjt: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 4.2e-27 | 44.37 | Show/hide |
Query: TLHEGLYKFNLPKPLSSPNTIVSQPKSNNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDD
T + LY + I N F I +L ++ G EF L HGI+H S P+T + NG+ ERKHRHIV++GLTLLSH+S+P T+W
Subjt: TLHEGLYKFNLPKPLSSPNTIVSQPKSNNFGKPILSLQTNGGAEFKRFIPLLQTHGINHRVSCPYTSQQNGIVERKHRHIVDVGLTLLSHSSMPLTFWDD
Query: VFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGCS
FS +V+LINRLP+ +L SP +KLF + P+Y LKVFGC+
Subjt: VFSTSVFLINRLPSIVLGGLSPLEKLFQKQPDYSTLKVFGCS
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 9.1e-14 | 47.5 | Show/hide |
Query: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
+++D+NN FL G L++ VYM QP GF K VCRL KA+YGLKQ P AW+ L +L ++ F+NS +D SL + G
Subjt: QKIDINNVFLHGILSETVYMDQPAGFHVKGATSLVCRLCKALYGLKQFPWAWFERLSLFLNSLCFLNSKADPSLLFRRSG
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