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Lag0041079 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041079
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:11744869..11745648
RNA-Seq ExpressionLag0041079
SyntenyLag0041079
Gene Ontology termsNA
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAF3955993.1 hypothetical protein CMV_018851 [Castanea mollissima]1.6e-0446.48Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPL-LK---TQAKPEKQFGSWMRAATP--SRKS
        R L L  G    +    KYER+ + C++CG + H D  CP+ LK   T  + E+QFGSWMRAATP  +RKS
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPL-LK---TQAKPEKQFGSWMRAATP--SRKS

OMP03234.1 hypothetical protein COLO4_10561 [Corchorus olitorius]6.7e-0638.46Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAATP
        RG+ L     GKIL + +YE+L DFCY CG ++H +  C     + +   K +K++G W+RA  P
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAATP

XP_024041282.1 uncharacterized protein LOC112098886 [Citrus clementina]1.6e-0441.94Show/hide
Query:  LTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATPSRK
        L   G     IL  + YERLLDFC+ CG I H    C   K+Q+K E  +G W++A T ++K
Subjt:  LTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATPSRK

XP_041009307.1 uncharacterized protein LOC121253347 [Juglans microcarpa x Juglans regia]7.4e-0540.24Show/hide
Query:  RASMRGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATPSRKSRFYARGRRGRGRF
        +A +RG  + GG   +   A KYERL +FC+ CG++ H   SCPL+        QFG W+R ATPS+     +R   G G F
Subjt:  RASMRGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATPSRKSRFYARGRRGRGRF

XP_042939372.1 uncharacterized protein LOC122274396 [Carya illinoinensis]1.3e-0450Show/hide
Query:  AIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATP
        A KYERL +FC+ CG+I H    CPL K Q   + Q+G W+RA  P
Subjt:  AIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATP

TrEMBL top hitse value%identityAlignment
A0A1R3K847 Uncharacterized protein3.2e-0638.46Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAATP
        RG+ L     GKIL + +YE+L DFCY CG ++H +  C     + +   K +K++G W+RA  P
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCP----LLKTQAKPEKQFGSWMRAATP

A0A2N9EVW3 Uncharacterized protein6.1e-0539.76Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQ----AKPEKQFGSWMRAAT--PSRKSRFYARGRRGRGR
        RG  +N     K   A +YERL +FCY+CG +DH +  C +   Q    AK E Q+G+W+RA+T  P RK+     G +  GR
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQ----AKPEKQFGSWMRAAT--PSRKSRFYARGRRGRGR

A0A2N9GU75 RNase H domain-containing protein8.0e-0538.55Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQ----AKPEKQFGSWMRAAT--PSRKSRFYARGRRGRGR
        RG  +N     K   A +YERL +FCY+CG +DH +  C +   Q    AK E Q+G+W+RA++  P RK+     G +  GR
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQ----AKPEKQFGSWMRAAT--PSRKSRFYARGRRGRGR

A0A5C7IBW4 CCHC-type domain-containing protein8.0e-0536.7Show/hide
Query:  DEDQRASMRGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQA----KPEKQFGSWMRAATPSRKSRFYARGRRGRGRFG------NRG
        D+  R  +R   +  G    +L  +KYERL DFC+ CG+I H+   CP     A    K +  FGSWMR   P+RK   + R    RG +G      N+G
Subjt:  DEDQRASMRGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQA----KPEKQFGSWMRAATPSRKSRFYARGRRGRGRFG------NRG

Query:  RGEYPWQFD
         G Y  Q D
Subjt:  RGEYPWQFD

A0A803L340 Uncharacterized protein4.2e-0638.75Show/hide
Query:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEK----QFGSWMRAATPSRKSRFYARGRRGRG
        RG+ L  GPS      +KYERL DFC+YCG +DH D  C   +   + E+    Q+G W+RA    +K R      + RG
Subjt:  RGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEK----QFGSWMRAATPSRKSRFYARGRRGRG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGGGTCGTTTTCTTCGAGTTCGGGTCAAGATGAAGATCAACGAGCCTCTATGCGAGGGCTAACACTAAATGGTGGACCATCTGGAAAAATTCTAACGGCGATTAA
GTACGAGAGATTACTAGATTTCTGTTATTATTGTGGGATGATCGACCACAATGATGGGTCATGCCCATTACTAAAAACCCAGGCGAAACCAGAAAAACAGTTCGGGTCTT
GGATGCGAGCGGCCACACCTTCGAGGAAATCTCGATTTTACGCCAGAGGCCGAAGAGGAAGGGGTCGTTTTGGGAACAGAGGACGGGGAGAGTACCCGTGGCAATTTGAC
CCAACGGAAGAGGAGGAAGAATCCGACGAAGATGAAGCTCTACACTCAGCCGATTCTCAAAACTCGAAAGGCAACAATGGCGAACAACATATTGAAACCGACCGGCGGAC
TACTCCGGCTACTGCATCCGACGAGCCTCCACCGCAATCAAAACTCCCAACGGAAATCCCGGGTAATAAATGTCTGATTTCCTTAGATAATACTAATAATGCGGAATCTT
TCCCTATAACTGCAGCTGGCGAGATTTTCGGCAAGAAAGGAGATGGACTTAATGAAGGAAACGTTCAGATTTTCCTAAATTCTAGCGTTTCATCAAATGGAGAAGGGAAA
GGAAGCGGCAACGGTGAAAAAATAGGGCAAATTCTATTTGAGGGGCTTAAAATGCATGGCGGGCCAAAAATGTGTGATGGGCCCAAATTTTTATCCAAGATAATGAGTTG
TGACAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGTTGGGGTCGTTTTCTTCGAGTTCGGGTCAAGATGAAGATCAACGAGCCTCTATGCGAGGGCTAACACTAAATGGTGGACCATCTGGAAAAATTCTAACGGCGATTAA
GTACGAGAGATTACTAGATTTCTGTTATTATTGTGGGATGATCGACCACAATGATGGGTCATGCCCATTACTAAAAACCCAGGCGAAACCAGAAAAACAGTTCGGGTCTT
GGATGCGAGCGGCCACACCTTCGAGGAAATCTCGATTTTACGCCAGAGGCCGAAGAGGAAGGGGTCGTTTTGGGAACAGAGGACGGGGAGAGTACCCGTGGCAATTTGAC
CCAACGGAAGAGGAGGAAGAATCCGACGAAGATGAAGCTCTACACTCAGCCGATTCTCAAAACTCGAAAGGCAACAATGGCGAACAACATATTGAAACCGACCGGCGGAC
TACTCCGGCTACTGCATCCGACGAGCCTCCACCGCAATCAAAACTCCCAACGGAAATCCCGGGTAATAAATGTCTGATTTCCTTAGATAATACTAATAATGCGGAATCTT
TCCCTATAACTGCAGCTGGCGAGATTTTCGGCAAGAAAGGAGATGGACTTAATGAAGGAAACGTTCAGATTTTCCTAAATTCTAGCGTTTCATCAAATGGAGAAGGGAAA
GGAAGCGGCAACGGTGAAAAAATAGGGCAAATTCTATTTGAGGGGCTTAAAATGCATGGCGGGCCAAAAATGTGTGATGGGCCCAAATTTTTATCCAAGATAATGAGTTG
TGACAAGTAG
Protein sequenceShow/hide protein sequence
MLGSFSSSSGQDEDQRASMRGLTLNGGPSGKILTAIKYERLLDFCYYCGMIDHNDGSCPLLKTQAKPEKQFGSWMRAATPSRKSRFYARGRRGRGRFGNRGRGEYPWQFD
PTEEEEESDEDEALHSADSQNSKGNNGEQHIETDRRTTPATASDEPPPQSKLPTEIPGNKCLISLDNTNNAESFPITAAGEIFGKKGDGLNEGNVQIFLNSSVSSNGEGK
GSGNGEKIGQILFEGLKMHGGPKMCDGPKFLSKIMSCDK