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Lag0041080 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041080
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:11764854..11766376
RNA-Seq ExpressionLag0041080
SyntenyLag0041080
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031753.1 gag protease polyprotein [Cucumis melo var. makuwa]2.1e-1846.43Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E + T C H+TVE+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]7.9e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]7.9e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]7.9e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]7.9e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

TrEMBL top hitse value%identityAlignment
A0A5A7SND9 Gag protease polyprotein1.0e-1846.43Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E + T C H+TVE+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

A0A5A7TZU9 Ribonuclease H3.8e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

A0A5D3BIH8 Uncharacterized protein3.8e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

A0A5D3C783 Ribonuclease H3.8e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

A0A5D3D1E5 Ribonuclease H3.8e-1845Show/hide
Query:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT
        I ++ +  ST + TR SAFQRLN    K  S  S    TR S F+RLSV+  RD+K+  + S+S++           +V  D EIRSA PSRMKRK FV+
Subjt:  IGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVT

Query:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ
        V+T+GSLKVKR DVV T P + + + E +   C H+T+E+
Subjt:  VDTDGSLKVKRRDVVITNPSEEDSDQEEEQTSCLHITVEQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCCATTGGGGAAGAGGATAGTACATTTTCAACTGCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATGTGCCCGTTGGGAAAGAAGAGAGTACATTTTCAAC
TCTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACACGGAGAAGAGACAAAAAAGAACAGTTTGCTTCATCAATATCTCACCGACTTCAATATGAAGATG
CGATGAAAAGTGAAAAGATCGTGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAAACCTTTGTTACGGTCGATACGGATGGTTCCTTGAAG
GTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGATAGTGACCAGGAAGAAGAACAAACCTCTTGTCTTCATATCACCGTTGAACAGGGTGCGTACACTCA
GTCGGGGAACAAAGTCAAGTGTTGTGGTCTTCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCTTAGGATTTTCTCAGGCCCCTCTTCAAGTAGCTGTA
AACTTCTTGCCCTTCGGGCTCTCGTTGTGGCTCTCGTTGGTCCTCCTAAAATTGTTCGAATCTCGAGCGGTAACCCTCTCGGATTAAGGCTTCTATCTCGTCCCTCAACT
GTGTGCATTCCCGGGTTGTGTGACCGTGGTCTCCGTGGAACATGCAGTACTTGTTCTGATTCCTCCTATCTGGGTTCGACCTCAATTTTCTTGGGAGATTCATTAGGTTT
GTATCTTGTATTGTGGCCAGGGCCTGTTCAAGTGGAGTTGTTAGTGGTGTACACCTGTCAAACTTGGCTTTCGGTTCTGCACGACACCAAGGCTCCCTGGTCTCTGGTCG
GCCTCGACCATTGGCCGAGGACTGCTCTTGCCGGCTTCGCCCTCTCTCTCTTTTTGTTTGGAACTCAGCAGTTACTTGGCGCTTATGTACCTTTGTGCTTGGGTCATGAA
TTCCACGTATGTCCGTGGCTGGCTCTCACCGATCGAGTTGTGCAGACTTTCATCCTGCAGACCTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCCATTGGGGAAGAGGATAGTACATTTTCAACTGCGAATGTCACTCGACCTTCAGCTTTTCAAAGGTTAAATGTGCCCGTTGGGAAAGAAGAGAGTACATTTTCAAC
TCTGGATGTGACTCGGCCATCAGTTTTTCAGAGGTTAAGTGTTACACGGAGAAGAGACAAAAAAGAACAGTTTGCTTCATCAATATCTCACCGACTTCAATATGAAGATG
CGATGAAAAGTGAAAAGATCGTGAAGGCCGATGGAGAAATTCGTAGTGCAGTTCCTTCACGAATGAAAAGAAAAACCTTTGTTACGGTCGATACGGATGGTTCCTTGAAG
GTAAAGCGACGTGATGTTGTCATCACCAATCCTTCGGAAGAAGATAGTGACCAGGAAGAAGAACAAACCTCTTGTCTTCATATCACCGTTGAACAGGGTGCGTACACTCA
GTCGGGGAACAAAGTCAAGTGTTGTGGTCTTCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCTTAGGATTTTCTCAGGCCCCTCTTCAAGTAGCTGTA
AACTTCTTGCCCTTCGGGCTCTCGTTGTGGCTCTCGTTGGTCCTCCTAAAATTGTTCGAATCTCGAGCGGTAACCCTCTCGGATTAAGGCTTCTATCTCGTCCCTCAACT
GTGTGCATTCCCGGGTTGTGTGACCGTGGTCTCCGTGGAACATGCAGTACTTGTTCTGATTCCTCCTATCTGGGTTCGACCTCAATTTTCTTGGGAGATTCATTAGGTTT
GTATCTTGTATTGTGGCCAGGGCCTGTTCAAGTGGAGTTGTTAGTGGTGTACACCTGTCAAACTTGGCTTTCGGTTCTGCACGACACCAAGGCTCCCTGGTCTCTGGTCG
GCCTCGACCATTGGCCGAGGACTGCTCTTGCCGGCTTCGCCCTCTCTCTCTTTTTGTTTGGAACTCAGCAGTTACTTGGCGCTTATGTACCTTTGTGCTTGGGTCATGAA
TTCCACGTATGTCCGTGGCTGGCTCTCACCGATCGAGTTGTGCAGACTTTCATCCTGCAGACCTGA
Protein sequenceShow/hide protein sequence
MPIGEEDSTFSTANVTRPSAFQRLNVPVGKEESTFSTLDVTRPSVFQRLSVTRRRDKKEQFASSISHRLQYEDAMKSEKIVKADGEIRSAVPSRMKRKTFVTVDTDGSLK
VKRRDVVITNPSEEDSDQEEEQTSCLHITVEQGAYTQSGNKVKCCGLPKGAYTLLGKSLGRLRIFSGPSSSSCKLLALRALVVALVGPPKIVRISSGNPLGLRLLSRPST
VCIPGLCDRGLRGTCSTCSDSSYLGSTSIFLGDSLGLYLVLWPGPVQVELLVVYTCQTWLSVLHDTKAPWSLVGLDHWPRTALAGFALSLFLFGTQQLLGAYVPLCLGHE
FHVCPWLALTDRVVQTFILQT