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Lag0041119 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041119
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionProtein FAR-RED ELONGATED HYPOCOTYL 3-like
Genome locationchr13:12371127..12372211
RNA-Seq ExpressionLag0041119
SyntenyLag0041119
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033326.1 MuDRA-like transposase [Cucumis melo var. makuwa]6.6e-2030.91Show/hide
Query:  LLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKT----
        L  V  + +GR  E++RY  ++  +V +P   + Q+   CI+ ++FP+ E  ++ LT+Y NG N SN+I I DD+      ++ S   D  LL       
Subjt:  LLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKT----

Query:  ------------------------------------------------------------------RQATTWIVGECVKSFLKVNDKVQFRPRDVINYMR
                                                                          RQAT+WIV EC KSF K+NDK   RP DVINYM+
Subjt:  ------------------------------------------------------------------RQATTWIVGECVKSFLKVNDKVQFRPRDVINYMR

Query:  RKHGVSISYDKAWRGRELEL
          HGV++SYDKAWR RE+ L
Subjt:  RKHGVSISYDKAWRGRELEL

KAA0042312.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]1.7e-1533.33Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  + +GR  E+ RY  +    V +    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I I DD+D     ++ S   +  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
        A       T ++  E  ++    ++     P DVINYM+  HGV++SYDKAWRGRE  L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

KAA0047392.1 uncharacterized protein E6C27_scaffold754G00490 [Cucumis melo var. makuwa]1.3e-1534.59Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  +F+GR  E+ RY  ++   V +P   + QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D     ++ S   D  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
                T ++  E  ++     +    RP DVINYM+  HGV++S +KAWRG E+ L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

KAA0054157.1 protein FAR1-RELATED SEQUENCE 4-like [Cucumis melo var. makuwa]2.8e-1535.48Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYL---LWK
        +GL  V  +F+GR  E++RY  ++   V +P     QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D  +    T      YL   L +
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYL---LWK

Query:  TRQATTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
        T  + +   G    +  + +        +VINYM+  H V++SYDKAWRGRE+ L
Subjt:  TRQATTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

TYK14069.1 protein FAR-RED ELONGATED HYPOCOTYL 3-like [Cucumis melo var. makuwa]1.3e-1534.59Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  +F+GR  E+ RY  ++   V +P   + QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D     ++ S   D  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
                T ++  E  ++     +    RP DVINYM+  HGV++S +KAWRG E+ L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

TrEMBL top hitse value%identityAlignment
A0A5A7TFW2 Protein FAR-RED ELONGATED HYPOCOTYL 3-like8.1e-1633.33Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  + +GR  E+ RY  +    V +    + QEF  CI+ ++FP+ +  ++RLT+Y  G N   +I I DD+D     ++ S   +  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
        A       T ++  E  ++    ++     P DVINYM+  HGV++SYDKAWRGRE  L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

A0A5A7TVA6 Uncharacterized protein6.2e-1634.59Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  +F+GR  E+ RY  ++   V +P   + QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D     ++ S   D  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
                T ++  E  ++     +    RP DVINYM+  HGV++S +KAWRG E+ L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

A0A5A7UHW9 Protein FAR1-RELATED SEQUENCE 4-like1.4e-1535.48Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYL---LWK
        +GL  V  +F+GR  E++RY  ++   V +P     QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D  +    T      YL   L +
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYL---LWK

Query:  TRQATTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
        T  + +   G    +  + +        +VINYM+  H V++SYDKAWRGRE+ L
Subjt:  TRQATTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

A0A5D3CUZ6 Protein FAR-RED ELONGATED HYPOCOTYL 3-like6.2e-1634.59Show/hide
Query:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ
        + L  V  +F+GR  E+ RY  ++   V +P   + QEF  CI+ ++FP+ E  ++RLT+Y    N SN+I I DD+D     ++ S   D  LL     
Subjt:  VGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQ

Query:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL
                T ++  E  ++     +    RP DVINYM+  HGV++S +KAWRG E+ L
Subjt:  A-------TTWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELEL

A0A5D3DDR3 MuDRA-like transposase3.2e-2030.91Show/hide
Query:  LLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKT----
        L  V  + +GR  E++RY  ++  +V +P   + Q+   CI+ ++FP+ E  ++ LT+Y NG N SN+I I DD+      ++ S   D  LL       
Subjt:  LLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKT----

Query:  ------------------------------------------------------------------RQATTWIVGECVKSFLKVNDKVQFRPRDVINYMR
                                                                          RQAT+WIV EC KSF K+NDK   RP DVINYM+
Subjt:  ------------------------------------------------------------------RQATTWIVGECVKSFLKVNDKVQFRPRDVINYMR

Query:  RKHGVSISYDKAWRGRELEL
          HGV++SYDKAWR RE+ L
Subjt:  RKHGVSISYDKAWRGRELEL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAGATGCACTCCACGCCGCCAGTTGGTTTGCTGAATGTGGTGGTTCTATTCAATGGGAGGCGAGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCC
AATACCGAAGGGATGCACAATACAAGAGTTCAATGAATGCATCCGGAGCAAGGTATTTCCATCGGGCGAGCACATGATTACTCGGTTAACCATGTACAAGAATGGTATCA
ACAAGTCTAATATAATCTGGATCACCGACGACAGGGATGGAAAAAATCACGCGATGATTACGTCGACGTTGAAGGATCAGTATCTGTTATGGAAGACTCGGCAAGCCACG
ACATGGATTGTGGGGGAGTGTGTGAAGTCATTTCTAAAAGTAAATGACAAGGTCCAGTTTCGCCCCCGTGATGTTATCAACTATATGAGGAGGAAACACGGTGTCAGCAT
CAGTTATGACAAGGCATGGAGGGGGCGAGAACTTGAACTTACTGTACATACACTGCTTTTGATGTTGACGATTAGGGCAGGTTCAGGTATTTCTTCATGTGTCTCTCTGC
GTCCATACATGCATGGAAATACTGTTTTCCGGTTATGTCGGTATTTCTTCATGTGTCTCTCAGCGCTTGCTGGGAGGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCAGATGCACTCCACGCCGCCAGTTGGTTTGCTGAATGTGGTGGTTCTATTCAATGGGAGGCGAGATGAAAACAATCGGTACAATGGGTTTAAGTCCGACAGTGTGCC
AATACCGAAGGGATGCACAATACAAGAGTTCAATGAATGCATCCGGAGCAAGGTATTTCCATCGGGCGAGCACATGATTACTCGGTTAACCATGTACAAGAATGGTATCA
ACAAGTCTAATATAATCTGGATCACCGACGACAGGGATGGAAAAAATCACGCGATGATTACGTCGACGTTGAAGGATCAGTATCTGTTATGGAAGACTCGGCAAGCCACG
ACATGGATTGTGGGGGAGTGTGTGAAGTCATTTCTAAAAGTAAATGACAAGGTCCAGTTTCGCCCCCGTGATGTTATCAACTATATGAGGAGGAAACACGGTGTCAGCAT
CAGTTATGACAAGGCATGGAGGGGGCGAGAACTTGAACTTACTGTACATACACTGCTTTTGATGTTGACGATTAGGGCAGGTTCAGGTATTTCTTCATGTGTCTCTCTGC
GTCCATACATGCATGGAAATACTGTTTTCCGGTTATGTCGGTATTTCTTCATGTGTCTCTCAGCGCTTGCTGGGAGGTGA
Protein sequenceShow/hide protein sequence
MQMHSTPPVGLLNVVVLFNGRRDENNRYNGFKSDSVPIPKGCTIQEFNECIRSKVFPSGEHMITRLTMYKNGINKSNIIWITDDRDGKNHAMITSTLKDQYLLWKTRQAT
TWIVGECVKSFLKVNDKVQFRPRDVINYMRRKHGVSISYDKAWRGRELELTVHTLLLMLTIRAGSGISSCVSLRPYMHGNTVFRLCRYFFMCLSALAGR