; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041123 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041123
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr13:12447318..12451130
RNA-Seq ExpressionLag0041123
SyntenyLag0041123
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022926214.1 uncharacterized protein LOC111433394 [Cucurbita moschata]1.0e-3642.38Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + VLEVD +S+I   +A + N L+N+ +       A +   AV
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ----------MVNQSGFAKAQLANELKA
        +NQ   E+CVYCGEEH ++ CP+NPAS+F+V                    GWRNHPNF+W GQGS  Q             + NQ  ++  Q+  + K 
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ----------MVNQSGFAKAQLANELKA

Query:  RPQGKLPLDT
         PQ +  L T
Subjt:  RPQGKLPLDT

XP_022929949.1 uncharacterized protein LOC111436411 [Cucurbita moschata]1.9e-3540.27Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN VT+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + VLEVD +S+I   +A + N L+N+ +       A +  AA 
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFAKA-QLANEL-----KARPQG
        +NQ   E+CVYCGEEH ++ CP+NPAS+F+V                    GWRNHPNF+W GQ  ++  QQM  ++ +    +L N+L     +   QG
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFAKA-QLANEL-----KARPQG

Query:  KLPLDTEHPKREGKKQVIMDH
        K     ++      + +I ++
Subjt:  KLPLDTEHPKREGKKQVIMDH

XP_022947838.1 uncharacterized protein LOC111451598 [Cucurbita moschata]2.1e-3438.58Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        +ETFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW DVR    KK + VLEVD +S+I   +A + N L+N+         A    A V
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ---------------------TQQMVNQ-SG
        + Q   E+CVYCGE+H ++ CP+NPAS+F+V                    GWRNHPNF   GQGS  Q                     +QQ   Q  G
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ---------------------TQQMVNQ-SG

Query:  FAKA--------------------------------------QLANELKARPQGKLPLDTEHPKREG
         ++A                                      QLANEL+ RP GKLP DTE PKREG
Subjt:  FAKA--------------------------------------QLANELKARPQGKLPLDTEHPKREG

XP_022960432.1 uncharacterized protein LOC111461168 [Cucurbita moschata]3.6e-3448.19Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    KK + VLEVD +S+I   +A + N L+N+         A    AAV
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGS
        + Q   E+CVYCGEEH ++ CP NPAS+ +V                    GWRNHPNF+W GQGS
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGS

XP_023532393.1 uncharacterized protein LOC111794553 [Cucurbita pepo subsp. pepo]8.5e-3636.68Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+ QW+DVR     K + VLEVD +S+I+  +A + N L+N+ +       A +  AA+
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ--------------------TQQMVNQSG--
        +NQ   E+CVYCGEE+ ++ CP+N AS+F+V                    GWRNHPNF W GQGS+ Q                      Q VN  G  
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ--------------------TQQMVNQSG--

Query:  -------------------FAK-------------------AQLANELKARPQGKLPLDTEHPKREGKKQVIMDHSGIQGADEDNKTRN
                            AK                    QLA EL+ RP GKLP +TE PKREG+K+             D + RN
Subjt:  -------------------FAK-------------------AQLANELKARPQGKLPLDTEHPKREGKKQVIMDHSGIQGADEDNKTRN

TrEMBL top hitse value%identityAlignment
A0A6J1DJC7 Ribonuclease H2.3e-3162.1Show/hide
Query:  EWAIELSEYDIHYKPRTLMKGQAVANFVAELT---------------HAKTWTLSVNGSSNTRGYEARILLESPEGEGFEYALRFNFRASQNEAEYEALL
        +WA+ELSEYDIHYKPRT MK QAVA+F+AELT                 + WTL V+GSSN RG  AR+LL SP+ E FEYALRFNF AS NEAEYEALL
Subjt:  EWAIELSEYDIHYKPRTLMKGQAVANFVAELT---------------HAKTWTLSVNGSSNTRGYEARILLESPEGEGFEYALRFNFRASQNEAEYEALL

Query:  TGLKLAREIGISNLVVQSDSQLIV
         GLK+AR +G+ N+++ SDSQLIV
Subjt:  TGLKLAREIGISNLVVQSDSQLIV

A0A6J1EEI2 uncharacterized protein LOC1114333944.9e-3742.38Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + VLEVD +S+I   +A + N L+N+ +       A +   AV
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ----------MVNQSGFAKAQLANELKA
        +NQ   E+CVYCGEEH ++ CP+NPAS+F+V                    GWRNHPNF+W GQGS  Q             + NQ  ++  Q+  + K 
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQ----------MVNQSGFAKAQLANELKA

Query:  RPQGKLPLDT
         PQ +  L T
Subjt:  RPQGKLPLDT

A0A6J1EQ90 uncharacterized protein LOC1114364119.2e-3640.27Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN VT+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    +K + VLEVD +S+I   +A + N L+N+ +       A +  AA 
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFAKA-QLANEL-----KARPQG
        +NQ   E+CVYCGEEH ++ CP+NPAS+F+V                    GWRNHPNF+W GQ  ++  QQM  ++ +    +L N+L     +   QG
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQTQQMVNQSGFAKA-QLANEL-----KARPQG

Query:  KLPLDTEHPKREGKKQVIMDH
        K     ++      + +I ++
Subjt:  KLPLDTEHPKREGKKQVIMDH

A0A6J1G7Q6 uncharacterized protein LOC1114515981.0e-3438.58Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        +ETFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW DVR    KK + VLEVD +S+I   +A + N L+N+         A    A V
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ---------------------TQQMVNQ-SG
        + Q   E+CVYCGE+H ++ CP+NPAS+F+V                    GWRNHPNF   GQGS  Q                     +QQ   Q  G
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGSNVQ---------------------TQQMVNQ-SG

Query:  FAKA--------------------------------------QLANELKARPQGKLPLDTEHPKREG
         ++A                                      QLANEL+ RP GKLP DTE PKREG
Subjt:  FAKA--------------------------------------QLANELKARPQGKLPLDTEHPKREG

A0A6J1H7E4 uncharacterized protein LOC1114611681.7e-3448.19Show/hide
Query:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV
        METFY GLN  T+ +VDASA G +L+KT+NEA+EILE+I++N+CQW+DVR    KK + VLEVD +S+I   +A + N L+N+         A    AAV
Subjt:  METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGT-NKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLA-MEPAAV

Query:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGS
        + Q   E+CVYCGEEH ++ CP NPAS+ +V                    GWRNHPNF+W GQGS
Subjt:  VNQVTEEACVYCGEEHNYEFCPNNPASVFFV--------------------GWRNHPNFAWGGQGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAACATTTTACAAGGGGTTAAATGGAGTAACCCAGGGTATGGTTGATGCTTCGGCTAGAGGGGTCCTTTTGGCAAAAACTTTTAATGAAGCCCATGAAATTTTAGA
AAAAATATCAACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGTTGATATTGCAA
TGTTAGCCAACGCTCTTAAAAATGTGACAATGTTTAGTCATCAGCAGCCGCTGGCTATGGAGCCTGCTGCGGTGGTGAACCAAGTTACAGAGGAAGCATGTGTCTATTGT
GGTGAAGAGCACAACTACGAATTTTGCCCCAACAATCCAGCTTCTGTGTTTTTTGTAGGTTGGCGCAACCACCCCAACTTCGCATGGGGAGGACAAGGAAGCAATGTGCA
AACACAGCAAATGGTGAACCAGTCGGGATTTGCTAAAGCGCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCCTTAGATACTGAACACCCTAAAAGAG
AAGGTAAGAAGCAGGTAATTATGGATCATTCTGGAATTCAAGGAGCAGATGAGGACAACAAGACACGAAACCGAAGATGCGACCAGGAAATGGACCCTAGAGGGGAACTA
GGCCATAGGGTTGGGCCAAGGCCGAAAGGATCGAGCCTTGGTCCAACCCCACGCTCGGCCTCAGCCCGCTTGGCGTCTCATGAATGGGCAATTGAGTTGAGTGAATATGA
CATCCACTACAAACCGAGGACGTTAATGAAAGGACAGGCGGTTGCAAACTTTGTGGCAGAGCTGACGCATGCCAAGACCTGGACCCTTTCTGTCAACGGATCCTCTAACA
CAAGGGGATATGAAGCAAGAATATTGTTGGAATCCCCAGAGGGAGAGGGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCACAAAATGAAGCAGAATATGAAGCT
CTCCTTACAGGACTGAAGTTAGCCAGAGAAATTGGAATTTCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAACATTTTACAAGGGGTTAAATGGAGTAACCCAGGGTATGGTTGATGCTTCGGCTAGAGGGGTCCTTTTGGCAAAAACTTTTAATGAAGCCCATGAAATTTTAGA
AAAAATATCAACTAATAGTTGTCAGTGGTCAGATGTTAGAGGCACAAATAAAAAGGTTAAGAGTGTGTTAGAGGTTGATGGTGTGTCCACCATTAGGGTTGATATTGCAA
TGTTAGCCAACGCTCTTAAAAATGTGACAATGTTTAGTCATCAGCAGCCGCTGGCTATGGAGCCTGCTGCGGTGGTGAACCAAGTTACAGAGGAAGCATGTGTCTATTGT
GGTGAAGAGCACAACTACGAATTTTGCCCCAACAATCCAGCTTCTGTGTTTTTTGTAGGTTGGCGCAACCACCCCAACTTCGCATGGGGAGGACAAGGAAGCAATGTGCA
AACACAGCAAATGGTGAACCAGTCGGGATTTGCTAAAGCGCAGCTAGCTAATGAGCTGAAGGCAAGGCCTCAAGGGAAACTTCCCTTAGATACTGAACACCCTAAAAGAG
AAGGTAAGAAGCAGGTAATTATGGATCATTCTGGAATTCAAGGAGCAGATGAGGACAACAAGACACGAAACCGAAGATGCGACCAGGAAATGGACCCTAGAGGGGAACTA
GGCCATAGGGTTGGGCCAAGGCCGAAAGGATCGAGCCTTGGTCCAACCCCACGCTCGGCCTCAGCCCGCTTGGCGTCTCATGAATGGGCAATTGAGTTGAGTGAATATGA
CATCCACTACAAACCGAGGACGTTAATGAAAGGACAGGCGGTTGCAAACTTTGTGGCAGAGCTGACGCATGCCAAGACCTGGACCCTTTCTGTCAACGGATCCTCTAACA
CAAGGGGATATGAAGCAAGAATATTGTTGGAATCCCCAGAGGGAGAGGGATTTGAGTATGCTTTGAGATTCAATTTTAGAGCCTCACAAAATGAAGCAGAATATGAAGCT
CTCCTTACAGGACTGAAGTTAGCCAGAGAAATTGGAATTTCAAATCTTGTGGTTCAGAGTGATTCACAGTTAATTGTAAAGTAG
Protein sequenceShow/hide protein sequence
METFYKGLNGVTQGMVDASARGVLLAKTFNEAHEILEKISTNSCQWSDVRGTNKKVKSVLEVDGVSTIRVDIAMLANALKNVTMFSHQQPLAMEPAAVVNQVTEEACVYC
GEEHNYEFCPNNPASVFFVGWRNHPNFAWGGQGSNVQTQQMVNQSGFAKAQLANELKARPQGKLPLDTEHPKREGKKQVIMDHSGIQGADEDNKTRNRRCDQEMDPRGEL
GHRVGPRPKGSSLGPTPRSASARLASHEWAIELSEYDIHYKPRTLMKGQAVANFVAELTHAKTWTLSVNGSSNTRGYEARILLESPEGEGFEYALRFNFRASQNEAEYEA
LLTGLKLAREIGISNLVVQSDSQLIVK