; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041126 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041126
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:12494420..12496350
RNA-Seq ExpressionLag0041126
SyntenyLag0041126
Gene Ontology termsGO:0050789 - regulation of biological process (biological process)
GO:0005622 - intracellular (cellular component)
GO:0003824 - catalytic activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAN80546.1 hypothetical protein VITISV_010897 [Vitis vinifera]1.3e-2737.06Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ER +L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

CAN81818.1 hypothetical protein VITISV_009635 [Vitis vinifera]1.0e-2737.06Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ER +L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

CCA66235.1 hypothetical protein [Beta vulgaris subsp. vulgaris]2.6e-2843.56Show/hide
Query:  KGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAFW
        +G ++ K  +++S LQYADDTL FC      L   + ++ L    SGL IN  KS +IGINVS+Q M + T    C+ GSL FNYLG  +GG+ +R   W
Subjt:  KGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAFW

Query:  YHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWN
          ++ER+  K+D W+    S GGRVTL +S ++SLPLY  SL   P+S+I+ + K+ R+F+W+
Subjt:  YHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWN

RVW33074.1 putative ribonuclease H protein [Vitis vinifera]3.5e-2837.65Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ERK+L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

RVX13544.1 LINE-1 retrotransposable element ORF2 protein [Vitis vinifera]1.3e-2737.06Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ER +L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

TrEMBL top hitse value%identityAlignment
A0A438DC91 Putative ribonuclease H protein1.7e-2837.65Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ERK+L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

A0A803P465 Uncharacterized protein1.2e-2942.94Show/hide
Query:  LKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAF
        + G+ +GK +V+VS LQ+ADDT+FF  N E  L +   +++   A SGL IN++KS ++GI + ++ +S       C+ GS    YLG  LGG+  + +F
Subjt:  LKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAF

Query:  WYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVW
        W  +M++   ++D W+    SKGGR+TL QSVL+SLPLY  SL KAP+S+ KA+ K++R+F+W
Subjt:  WYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVW

A0A803P8A0 Uncharacterized protein7.5e-2938.95Show/hide
Query:  VQFCLERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQL
        V   +E +   G+QIGK  + +S LQ+ADDTLFF  + E  L +   I++     SGL +N+ KS ++GI +SD+ ++   N+  C+ G     YLG  L
Subjt:  VQFCLERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQL

Query:  GGNYNRRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVW
        GG+  ++ FW  ++++   ++D W+    S+GGR+TL QSVL+SLP+Y  SL K PK ++K + K++R+F W
Subjt:  GGNYNRRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVW

A5C4H7 Reverse transcriptase domain-containing protein4.9e-2837.06Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        ER +L+G+++G+++  VS LQ+ADDT+FF  + E D++  ++++ +    SGL +N+ KS I GIN+    +S    + +C+A      YLG  LGGN  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI
           FW  ++ER+  ++D W+K   S GGR+TL QS L  +P Y  SL K P S+   + ++ R+F+W+ +
Subjt:  RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWNAI

F4NCM4 Reverse transcriptase domain-containing protein1.3e-2843.56Show/hide
Query:  KGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAFW
        +G ++ K  +++S LQYADDTL FC      L   + ++ L    SGL IN  KS +IGINVS+Q M + T    C+ GSL FNYLG  +GG+ +R   W
Subjt:  KGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAFW

Query:  YHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWN
          ++ER+  K+D W+    S GGRVTL +S ++SLPLY  SL   P+S+I+ + K+ R+F+W+
Subjt:  YHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSLLKAPKSIIKAMGKIIRNFVWN

SwissProt top hitse value%identityAlignment
P08548 LINE-1 reverse transcriptase homolog1.1e-0825.58Show/hide
Query:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN
        E K +KG  IG  ++++S+  +ADD + +  N      +  ++IK     SG  IN  KS       ++Q      +            YLG  L  +  
Subjt:  ERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCESDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYN

Query:  --RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSL--LKAPKSIIKAMGKIIRNFVWN
           +  +  L + +   ++KW+  P S  GR+ + +  +    +Y F+   +KAP S  K + KII +F+WN
Subjt:  --RRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQFSL--LKAPKSIIKAMGKIIRNFVWN

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTCAAGGAAGGAGCATTCCGTTGGAAGATGGCCTCTCCGTCGGGAAAAATCAAGGTCGCAACAGCGTGGTAGTGGTGACTGCGGACCGAGAAACTCGAACGGGCC
AATTGTATTCTGTTTTTTTTTTCTCGATCGGTCTCGGGCAGGACATTCGACCGAGATCCTCGAGCGAGAAATCAGTGTTGCGAAACGTTTGCAAATCAGTTCAGTCCAAT
TTTGTCTGGAAAGAAAGATTCTGAAGGGTTGGCAAATTGGGAAGAGTAAAGTGGAGGTCTCTATGCTTCAGTATGCTGATGACACTCTTTTTTTCTGCCCAAATTGTGAG
TCAGATTTGATCAGGTGGAGAGATATCATCAAGCTGATTTTGGCCGGTTCCGGGCTGGTGATCAACATGGCCAAATCCTTCATAATTGGTATTAATGTTAGTGATCAGGA
TATGTCCAATTGGACCAATATCTTTGAATGTCAAGCTGGTTCTCTGTCGTTTAATTATTTGGGTTTCCAACTGGGAGGTAACTACAACAGAAGAGCTTTTTGGTATCATT
TGATGGAGAGGCTTGAGATGAAAATAGATAAATGGAGGAAGTTCCCCACCTCTAAAGGAGGTAGGGTTACTCTTGCTCAATCAGTTCTAAATAGCCTTCCCCTGTATCAG
TTCTCCTTGCTTAAAGCTCCCAAATCCATAATCAAGGCCATGGGAAAAATTATTCGAAACTTTGTGTGGAATGCAATCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGATTCAAGGAAGGAGCATTCCGTTGGAAGATGGCCTCTCCGTCGGGAAAAATCAAGGTCGCAACAGCGTGGTAGTGGTGACTGCGGACCGAGAAACTCGAACGGGCC
AATTGTATTCTGTTTTTTTTTTCTCGATCGGTCTCGGGCAGGACATTCGACCGAGATCCTCGAGCGAGAAATCAGTGTTGCGAAACGTTTGCAAATCAGTTCAGTCCAAT
TTTGTCTGGAAAGAAAGATTCTGAAGGGTTGGCAAATTGGGAAGAGTAAAGTGGAGGTCTCTATGCTTCAGTATGCTGATGACACTCTTTTTTTCTGCCCAAATTGTGAG
TCAGATTTGATCAGGTGGAGAGATATCATCAAGCTGATTTTGGCCGGTTCCGGGCTGGTGATCAACATGGCCAAATCCTTCATAATTGGTATTAATGTTAGTGATCAGGA
TATGTCCAATTGGACCAATATCTTTGAATGTCAAGCTGGTTCTCTGTCGTTTAATTATTTGGGTTTCCAACTGGGAGGTAACTACAACAGAAGAGCTTTTTGGTATCATT
TGATGGAGAGGCTTGAGATGAAAATAGATAAATGGAGGAAGTTCCCCACCTCTAAAGGAGGTAGGGTTACTCTTGCTCAATCAGTTCTAAATAGCCTTCCCCTGTATCAG
TTCTCCTTGCTTAAAGCTCCCAAATCCATAATCAAGGCCATGGGAAAAATTATTCGAAACTTTGTGTGGAATGCAATCTAA
Protein sequenceShow/hide protein sequence
MDSRKEHSVGRWPLRREKSRSQQRGSGDCGPRNSNGPIVFCFFFLDRSRAGHSTEILEREISVAKRLQISSVQFCLERKILKGWQIGKSKVEVSMLQYADDTLFFCPNCE
SDLIRWRDIIKLILAGSGLVINMAKSFIIGINVSDQDMSNWTNIFECQAGSLSFNYLGFQLGGNYNRRAFWYHLMERLEMKIDKWRKFPTSKGGRVTLAQSVLNSLPLYQ
FSLLKAPKSIIKAMGKIIRNFVWNAI