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Lag0041138 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041138
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description40S ribosomal protein S23
Genome locationchr13:12662116..12664325
RNA-Seq ExpressionLag0041138
SyntenyLag0041138
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR006032 - Ribosomal protein S12/S23
IPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAB2598118.1 Ribosomal protein S12/S23 family protein [Pyrus ussuriensis x Pyrus communis]1.4e-1084.44Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSI
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSI

KJB36649.1 hypothetical protein B456_006G168700 [Gossypium raimondii]4.7e-1184.78Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

TQE03805.1 hypothetical protein C1H46_010612, partial [Malus baccata]4.7e-1180Show/hide
Query:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        DL SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

VDD34784.1 unnamed protein product, partial [Brassica oleracea]4.7e-1179.17Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEE
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN S+++E
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEE

XP_013616738.1 PREDICTED: 40S ribosomal protein S23-2, partial [Brassica oleracea var. oleracea]1.4e-1079.59Show/hide
Query:  LLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        L SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  LLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

TrEMBL top hitse value%identityAlignment
A0A0D2QBR7 Uncharacterized protein6.6e-1184.44Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSI
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSI

A0A0D2RXP4 Uncharacterized protein2.3e-1184.78Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEENVS+L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

A0A3P6EHE9 Uncharacterized protein (Fragment)2.3e-1179.17Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEE
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN S+++E
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEE

A0A540MYD2 Uncharacterized protein (Fragment)2.3e-1180Show/hide
Query:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        DL SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

A0A7J7M6N4 Uncharacterized protein6.6e-1178Show/hide
Query:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        D  SGIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  DLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

SwissProt top hitse value%identityAlignment
P46297 40S ribosomal protein S231.2e-1280.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

P49201 40S ribosomal protein S23-21.2e-1280.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

Q8I7D5 40S ribosomal protein S231.3e-1173.91Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        G+EAKQP+S I K  RVQLIKNGKKI A V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

Q9M5Z9 40S ribosomal protein S231.2e-1280.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

Q9SF35 40S ribosomal protein S23-11.2e-1280.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

Arabidopsis top hitse value%identityAlignment
AT3G09680.1 Ribosomal protein S12/S23 family protein8.2e-1480.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

AT5G02960.1 Ribosomal protein S12/S23 family protein8.2e-1480.43Show/hide
Query:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL
        GIEAKQP+S I K ARVQLIKNGKKIAA V NDGCLNYIEEN  +L
Subjt:  GIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSIL

AT5G49830.1 exocyst complex component 84B3.1e-0555.88Show/hide
Query:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ
        I  E+GD+HL+A MY+N+  N ++V++FPSLIFQ
Subjt:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ

AT5G49830.2 exocyst complex component 84B3.1e-0555.88Show/hide
Query:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ
        I  E+GD+HL+A MY+N+  N ++V++FPSLIFQ
Subjt:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ

AT5G49830.3 exocyst complex component 84B3.1e-0555.88Show/hide
Query:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ
        I  E+GD+HL+A MY+N+  N ++V++FPSLIFQ
Subjt:  ILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQ


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTACAATGGGAGACTTGTTGAGTGGTATTGAGGCTAAGCAACCTAGCTCTACTATTTGGAAGCATGCTAGAGTTCAACTTATTAAGAACGGGAAGAAGATTGCTGC
CTTAGTCTCCAATGATGGTTGTTTGAACTACATTGAAGAGAATGTTAGTATACTTGAGGAGGATGGAGACAACCATCTCACTGCTAAGATGTACCTAAATATGGGTGGAA
ATATGGATGAAGTTGAATGGTTTCCTTCCCTTATATTCCAGATTAATTACATTGATTTAGAGACTGTCTCACCCAGTACTTATCCATCATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCTACAATGGGAGACTTGTTGAGTGGTATTGAGGCTAAGCAACCTAGCTCTACTATTTGGAAGCATGCTAGAGTTCAACTTATTAAGAACGGGAAGAAGATTGCTGC
CTTAGTCTCCAATGATGGTTGTTTGAACTACATTGAAGAGAATGTTAGTATACTTGAGGAGGATGGAGACAACCATCTCACTGCTAAGATGTACCTAAATATGGGTGGAA
ATATGGATGAAGTTGAATGGTTTCCTTCCCTTATATTCCAGATTAATTACATTGATTTAGAGACTGTCTCACCCAGTACTTATCCATCATAG
Protein sequenceShow/hide protein sequence
MSTMGDLLSGIEAKQPSSTIWKHARVQLIKNGKKIAALVSNDGCLNYIEENVSILEEDGDNHLTAKMYLNMGGNMDEVEWFPSLIFQINYIDLETVSPSTYPS