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Lag0041146 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041146
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H protein
Genome locationchr13:12812564..12815252
RNA-Seq ExpressionLag0041146
SyntenyLag0041146
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PKA49974.1 Putative ribonuclease H protein [Apostasia shenzhenica]1.2e-1741.28Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL
        FN+A++ KQ WRI+T  N  +ARVL+  YF +   L A    NSS+ W+SI WG +LL+ G+R  +GN +++R+  DPW+PRP++F+ ++S    + NL 
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL

Query:  VAEFFTLLS
              LL+
Subjt:  VAEFFTLLS

XP_018837833.1 uncharacterized protein LOC109003938 [Juglans regia]2.6e-2030.08Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL
        FN+A++ KQ WRILT PN    +VL+  Y   T +L A+     S  W+S+   +ELL  G+   +GN  NI++  D W+P+  ++   S     ++   
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL

Query:  VAEFFTLLSNGMSMLGPSGTIATISFIIFLTFCAEATSLLIEYGKANASCGSRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKV
        VAE            G  G    +   +     A+ TS     G A      RGR R    ++    G + ++ DA FD+  +++G GV+IRD  G +  
Subjt:  VAEFFTLLSNGMSMLGPSGTIATISFIIFLTFCAEATSLLIEYGKANASCGSRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKV

Query:  VMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIR
         +SM     P+P  AE  AL   + L+  L +   T   D+L +IR
Subjt:  VMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIR

XP_022131662.1 uncharacterized protein LOC111004787 [Momordica charantia]9.4e-1839.83Show/hide
Query:  KRRRWSFGESVKKKREVG-----DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIR
        K+  W   E +   +E+G     D   FNQA++ KQ WR+L  PN+ ++RVL+  YF  + +L A +  N S+FWK   WG +LL  G+R  +GN   I 
Subjt:  KRRRWSFGESVKKKREVG-----DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIR

Query:  MSSDPWIPRPLTFKVLSS
        + SDPWIPRP +F+ +++
Subjt:  MSSDPWIPRPLTFKVLSS

XP_022158377.1 uncharacterized protein LOC111024874 [Momordica charantia]7.7e-2046.85Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLS-SGGVTDENL
        FNQA++ K  WR L  PNL +++VL+  YF  T++L A+N S SS+FWK   WG +LL  G+R+ +GN   I+  SDPW+PRP TFK L  + G  D   
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLS-SGGVTDENL

Query:  LVAEFFTLLSN
         VA F T   N
Subjt:  LVAEFFTLLSN

XP_024178198.1 uncharacterized protein LOC112184155 [Rosa chinensis]9.1e-2127.46Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL
        FN A++ KQ WR++ +P+  LA+VL+  YFP T  + A     +SF W+SI  G +LLR G+R  +GN  NI + +DPW+P P  F+  S      E   
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL

Query:  VAEFF-----TLLSNGMSMLGPSGTIATI--------------------------------------SFIIFLTFCAEATSLLIEYGKANASCGSRGRPR
        VA+F          +G+  L P     T+                                      S+   +   A ATS L +Y   +   G + R R
Subjt:  VAEFF-----TLLSNGMSMLGPSGTIATI--------------------------------------SFIIFLTFCAEATSLLIEYGKANASCGSRGRPR

Query:  SEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKVVMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIRMSRISG
        +   +    RG L +N+D +F   +   GVGVV+R+  G+     + +     + +  EA AL  G+++AI+ +   +   SD ++L+    + G
Subjt:  SEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKVVMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIRMSRISG

TrEMBL top hitse value%identityAlignment
A0A2I4G1R1 uncharacterized protein LOC1090039381.3e-2030.08Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL
        FN+A++ KQ WRILT PN    +VL+  Y   T +L A+     S  W+S+   +ELL  G+   +GN  NI++  D W+P+  ++   S     ++   
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLL

Query:  VAEFFTLLSNGMSMLGPSGTIATISFIIFLTFCAEATSLLIEYGKANASCGSRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKV
        VAE            G  G    +   +     A+ TS     G A      RGR R    ++    G + ++ DA FD+  +++G GV+IRD  G +  
Subjt:  VAEFFTLLSNGMSMLGPSGTIATISFIIFLTFCAEATSLLIEYGKANASCGSRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKV

Query:  VMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIR
         +SM     P+P  AE  AL   + L+  L +   T   D+L +IR
Subjt:  VMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIR

A0A6J1DX30 uncharacterized protein LOC1110248743.7e-2046.85Show/hide
Query:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLS-SGGVTDENL
        FNQA++ K  WR L  PNL +++VL+  YF  T++L A+N S SS+FWK   WG +LL  G+R+ +GN   I+  SDPW+PRP TFK L  + G  D   
Subjt:  FNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLS-SGGVTDENL

Query:  LVAEFFTLLSN
         VA F T   N
Subjt:  LVAEFFTLLSN

A0A803P9M1 Uncharacterized protein9.2e-1929.29Show/hide
Query:  KRRRWSFGESVKKKREVG-----DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIR
        K+  W     + K ++ G     D G FNQA++ KQ WR +  PN   +RVL+  YFP+ +IL      ++SF W+S+ WG +++  G R  +GN  N+R
Subjt:  KRRRWSFGESVKKKREVG-----DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIR

Query:  MSSDPWIPRPLTFKVLSSGGVTDENLLVAEF---------------FTLLSNGMSMLGPS-------GTIATISFIIFLTFCAEATSLLIEYGKANASCG
        +  DPW+PRP+TFK+     ++ ENL VA+                F +    + +  PS       G  A I+  + + +C    + L+E+       G
Subjt:  MSSDPWIPRPLTFKVLSSGGVTDENLLVAEF---------------FTLLSNGMSMLGPS-------GTIATISFIIFLTFCAEATSLLIEYGKANASCG

Query:  SRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKVVMSMSSHICPNPLCAEATALLEGMMLAINLN
        SR +  +   +     G + +NVDA   K    +G+G V RD+ G  +   S+  +    PL  E  A+L G+    + N
Subjt:  SRGRPRSEDGFLFQSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKVVMSMSSHICPNPLCAEATALLEGMMLAINLN

A0A803PQQ6 Uncharacterized protein2.8e-2044.04Show/hide
Query:  RWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPW
        +W++    K+K  +G  D G FNQA++ KQ WR L  P L  +RVL+ CY+P   +L+A   S+SSF W+S+ WG +LL  G R  +GN + +++  DPW
Subjt:  RWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPW

Query:  IPRPLTFKV
        +PRP+TF+V
Subjt:  IPRPLTFKV

A0A803Q154 Uncharacterized protein2.8e-2044.04Show/hide
Query:  RWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPW
        +W++    K+K  +G  D G FNQA++ KQ WR L  P L  +RVL+ CY+P  ++L+A   S+SSF W+S+ WG +LL  G R  +G+ + +R+ +DPW
Subjt:  RWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPW

Query:  IPRPLTFKV
        +PRP+TF V
Subjt:  IPRPLTFKV

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003103.4e-1036.9Show/hide
Query:  DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI
        D G FNQA++ KQ++RI+ +P+  L+R+LR  YFP ++++  +  +  S+ W+SI  G ELL  G+   +G+  + ++  D WI
Subjt:  DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI

Arabidopsis top hitse value%identityAlignment
AT3G09510.1 Ribonuclease H-like superfamily protein8.2e-0434.38Show/hide
Query:  LRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI----PRPL
        ++  YF   +IL+A      S+ W S+  G+ LL+ G R  +G+  NIR+  D  +    PRPL
Subjt:  LRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI----PRPL

AT4G29090.1 Ribonuclease H-like superfamily protein9.1e-1135.29Show/hide
Query:  RRWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDP
        + W      K +  +G  D   FN A++ KQ WR+L++P   +A+V +  YF  +  LNA   S  SF WKSI    E+LR G R  +GN  +I +    
Subjt:  RRWSFGESVKKKREVG--DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDP

Query:  WI
        W+
Subjt:  WI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein2.4e-1136.9Show/hide
Query:  DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI
        D G FNQA++ KQ++RI+ +P+  L+R+LR  YFP ++++  +  +  S+ W+SI  G ELL  G+   +G+  + ++  D WI
Subjt:  DDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWGVELLRGGIRMNLGNDHNIRMSSDPWI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGGGAGATGGTGAGTGAGAGAGAAAGAAAGAAGAAGAAAAAAAGAGAAAAAAATGTCGGCGGCGGTGGGCGGCTGCCGGAGACGGCGGTGACCGGCGGGAAGCGGCG
GCGCTGGAGTTTTGGTGAGAGTGTGAAGAAGAAGAGGGAGGTTGGTGATGATGGGAAGTTCAATCAGGCTATGATAACTAAGCAGGCTTGGCGAATTTTAACAAAGCCTA
ATCTTACCCTGGCTAGAGTGCTTCGAGGTTGTTATTTCCCTTCCACTACGATTTTAAATGCAAACAACCCATCTAACTCTTCCTTCTTTTGGAAGAGCATTCGTTGGGGA
GTGGAGTTGCTAAGAGGAGGCATAAGGATGAACCTAGGCAACGACCACAATATCAGAATGTCCAGTGATCCGTGGATACCTCGACCTCTAACCTTCAAGGTTTTGTCCTC
AGGTGGTGTCACTGACGAGAATTTGTTGGTCGCTGAATTTTTTACCCTTCTCTCCAATGGGATGTCGATGCTTGGGCCATCTGGAACAATCGCAACAATTTCGTTCATAA
TTTTCCTAACATTTTGTGCAGAGGCTACTTCTTTGTTGATTGAATACGGTAAGGCCAATGCTTCATGTGGTTCTAGAGGTCGTCCACGTTCGGAGGACGGTTTCCTGTTC
CAATCAAGGGGAAGTCTTATTATGAACGTCGATGCAACGTTCGACAAAATTAGTAGGAAGATCGGAGTAGGGGTTGTGATTCGAGATAACTCGGGTTCTTTAAAGGTCGT
GATGTCTATGTCCTCTCATATCTGCCCTAATCCTTTATGTGCAGAGGCTACTGCTTTGTTGGAAGGTATGATGTTGGCCATAAACTTGAATATGTCAAGCATGACGACCT
TATCTGACTCATTATCCTTGATTCGTATGTCAAGGATATCAGGCCCATGGGCCATTGTAAAGACAAGGATACAAGCCAAATAG
mRNA sequenceShow/hide mRNA sequence
ATGAGGGAGATGGTGAGTGAGAGAGAAAGAAAGAAGAAGAAAAAAAGAGAAAAAAATGTCGGCGGCGGTGGGCGGCTGCCGGAGACGGCGGTGACCGGCGGGAAGCGGCG
GCGCTGGAGTTTTGGTGAGAGTGTGAAGAAGAAGAGGGAGGTTGGTGATGATGGGAAGTTCAATCAGGCTATGATAACTAAGCAGGCTTGGCGAATTTTAACAAAGCCTA
ATCTTACCCTGGCTAGAGTGCTTCGAGGTTGTTATTTCCCTTCCACTACGATTTTAAATGCAAACAACCCATCTAACTCTTCCTTCTTTTGGAAGAGCATTCGTTGGGGA
GTGGAGTTGCTAAGAGGAGGCATAAGGATGAACCTAGGCAACGACCACAATATCAGAATGTCCAGTGATCCGTGGATACCTCGACCTCTAACCTTCAAGGTTTTGTCCTC
AGGTGGTGTCACTGACGAGAATTTGTTGGTCGCTGAATTTTTTACCCTTCTCTCCAATGGGATGTCGATGCTTGGGCCATCTGGAACAATCGCAACAATTTCGTTCATAA
TTTTCCTAACATTTTGTGCAGAGGCTACTTCTTTGTTGATTGAATACGGTAAGGCCAATGCTTCATGTGGTTCTAGAGGTCGTCCACGTTCGGAGGACGGTTTCCTGTTC
CAATCAAGGGGAAGTCTTATTATGAACGTCGATGCAACGTTCGACAAAATTAGTAGGAAGATCGGAGTAGGGGTTGTGATTCGAGATAACTCGGGTTCTTTAAAGGTCGT
GATGTCTATGTCCTCTCATATCTGCCCTAATCCTTTATGTGCAGAGGCTACTGCTTTGTTGGAAGGTATGATGTTGGCCATAAACTTGAATATGTCAAGCATGACGACCT
TATCTGACTCATTATCCTTGATTCGTATGTCAAGGATATCAGGCCCATGGGCCATTGTAAAGACAAGGATACAAGCCAAATAG
Protein sequenceShow/hide protein sequence
MREMVSERERKKKKKREKNVGGGGRLPETAVTGGKRRRWSFGESVKKKREVGDDGKFNQAMITKQAWRILTKPNLTLARVLRGCYFPSTTILNANNPSNSSFFWKSIRWG
VELLRGGIRMNLGNDHNIRMSSDPWIPRPLTFKVLSSGGVTDENLLVAEFFTLLSNGMSMLGPSGTIATISFIIFLTFCAEATSLLIEYGKANASCGSRGRPRSEDGFLF
QSRGSLIMNVDATFDKISRKIGVGVVIRDNSGSLKVVMSMSSHICPNPLCAEATALLEGMMLAINLNMSSMTTLSDSLSLIRMSRISGPWAIVKTRIQAK