; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041153 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041153
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRNase H domain-containing protein
Genome locationchr13:12926487..12927054
RNA-Seq ExpressionLag0041153
SyntenyLag0041153
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAB4273082.1 unnamed protein product [Prunus armeniaca]2.4e-0940.17Show/hide
Query:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDF
        SWR P  G  K+N D +W+   + GG+GWV+RDS G ++ AG K   R  S  A+E EA+ E   A +  V +G     L  ESDSL +I+ + GE    
Subjt:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDF

Query:  SEVGTAILCPIKLLLQQ
          V T I+  IK L+ Q
Subjt:  SEVGTAILCPIKLLLQQ

CAB4279811.1 unnamed protein product [Prunus armeniaca]9.2e-0941.67Show/hide
Query:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGE
        SWR    G  K+N D +W+   + GG+GWV+RDS G ++ AGCK   R  S  A+E +A+ E   A L  V +G     L  ESDSL +I+ + GE
Subjt:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGE

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]2.1e-0834.31Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS
        W+PP   SWKLN++ +W      GG+GW++RD  G +I A C+ +    ++  LE  A+ EG+RA  +         P+  ESDSL  I  +  + +D +
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS

Query:  EV
        E+
Subjt:  EV

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]6.4e-1037.74Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS
        W PP +  W LN+D SW DS  +GG+GW+IR   G ++ AG + V    +VK LE  A+LEG+R      + G L  PL  E+DS  +   +  + ED +
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS

Query:  EVGTAI
        + G  +
Subjt:  EVGTAI

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]2.7e-0833.96Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRA----YLKWVDAGNLTLPLAAESDSLGIIKAVAGEE
        W+PP   SWKLN+D +W      GG+GW++RD  G +I A C+ +    ++  LE  A+ EG+RA    + + +   +   P+  ESDSL  I  +  + 
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRA----YLKWVDAGNLTLPLAAESDSLGIIKAVAGEE

Query:  EDFSEV
        +D +E+
Subjt:  EDFSEV

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134129.9e-0934.31Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS
        W+PP   SWKLN++ +W      GG+GW++RD  G +I A C+ +    ++  LE  A+ EG+RA  +         P+  ESDSL  I  +  + +D +
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS

Query:  EV
        E+
Subjt:  EV

A0A6J1DNV9 uncharacterized protein LOC1110224033.1e-1037.74Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS
        W PP +  W LN+D SW DS  +GG+GW+IR   G ++ AG + V    +VK LE  A+LEG+R      + G L  PL  E+DS  +   +  + ED +
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFS

Query:  EVGTAI
        + G  +
Subjt:  EVGTAI

A0A6J1DSV1 uncharacterized protein LOC1110236081.3e-0833.96Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRA----YLKWVDAGNLTLPLAAESDSLGIIKAVAGEE
        W+PP   SWKLN+D +W      GG+GW++RD  G +I A C+ +    ++  LE  A+ EG+RA    + + +   +   P+  ESDSL  I  +  + 
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRA----YLKWVDAGNLTLPLAAESDSLGIIKAVAGEE

Query:  EDFSEV
        +D +E+
Subjt:  EDFSEV

A0A6J5UAY2 Reverse transcriptase domain-containing protein1.2e-0940.17Show/hide
Query:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDF
        SWR P  G  K+N D +W+   + GG+GWV+RDS G ++ AG K   R  S  A+E EA+ E   A +  V +G     L  ESDSL +I+ + GE    
Subjt:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDF

Query:  SEVGTAILCPIKLLLQQ
          V T I+  IK L+ Q
Subjt:  SEVGTAILCPIKLLLQQ

A0A6J5UV01 Reverse transcriptase domain-containing protein4.5e-0941.67Show/hide
Query:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGE
        SWR    G  K+N D +W+   + GG+GWV+RDS G ++ AGCK   R  S  A+E +A+ E   A L  V +G     L  ESDSL +I+ + GE
Subjt:  SWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G27870.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.5e-0444.44Show/hide
Query:  SHPSWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAG
        +H  WR P+ G  K N D S+++   K   GWV+RDS+GS + AG
Subjt:  SHPSWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAG

AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein9.5e-0432.2Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL
        W+ P     K N+D +W     + G+GW++R+ SG ++  G + + R+ +V   E EAL
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL

AT4G09775.1 BEST Arabidopsis thaliana protein match is: Ribonuclease H-like superfamily protein (TAIR:AT2G02650.1)3.9e-0538.98Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL
        W PP  G  K N D  ++         W+IRDS+G +I +GC ++ +S+S  AL+ EAL
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL

AT4G29090.1 Ribonuclease H-like superfamily protein9.5e-0433.9Show/hide
Query:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL
        WRPP     K N+D +W    ++ G+GWV+R+  G +   G + + +  SV   E EA+
Subjt:  WRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTCACCCTTCTTGGAGGCCACCGGATCTTGGTTCGTGGAAGCTCAACTCGGACCCGTCTTGGATCGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGA
CTCATCTGGATCTTTAATTGGAGCAGGCTGCAAGCAAGTTTCTCGATCTTGGTCAGTAAAAGCCCTTGAAGGCGAGGCTTTGCTAGAAGGAGTGAGAGCGTACCTGAAGT
GGGTCGATGCCGGCAATCTCACCCTCCCCCTGGCCGCTGAATCGGACTCCTTAGGCATCATCAAGGCGGTTGCAGGCGAGGAGGAAGATTTTTCGGAAGTGGGAACTGCA
ATACTTTGCCCCATCAAGTTGCTCTTGCAGCAGCAAATTATGGGAGTTGCTCTGTTTTTTTTTGGTCATGCATTTTCCGGTAGGTGGGAAGATGTGGTGCGGTTGAGGGA
TGAGGATATCCCTCAATGGTTCATAAATTCTTTTGCTGATGTAGTCGGTGGTTGTGTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGTCACCCTTCTTGGAGGCCACCGGATCTTGGTTCGTGGAAGCTCAACTCGGACCCGTCTTGGATCGATTCCATCAAAAAAGGCGGTTTGGGATGGGTGATTCGTGA
CTCATCTGGATCTTTAATTGGAGCAGGCTGCAAGCAAGTTTCTCGATCTTGGTCAGTAAAAGCCCTTGAAGGCGAGGCTTTGCTAGAAGGAGTGAGAGCGTACCTGAAGT
GGGTCGATGCCGGCAATCTCACCCTCCCCCTGGCCGCTGAATCGGACTCCTTAGGCATCATCAAGGCGGTTGCAGGCGAGGAGGAAGATTTTTCGGAAGTGGGAACTGCA
ATACTTTGCCCCATCAAGTTGCTCTTGCAGCAGCAAATTATGGGAGTTGCTCTGTTTTTTTTTGGTCATGCATTTTCCGGTAGGTGGGAAGATGTGGTGCGGTTGAGGGA
TGAGGATATCCCTCAATGGTTCATAAATTCTTTTGCTGATGTAGTCGGTGGTTGTGTTTAA
Protein sequenceShow/hide protein sequence
MSHPSWRPPDLGSWKLNSDPSWIDSIKKGGLGWVIRDSSGSLIGAGCKQVSRSWSVKALEGEALLEGVRAYLKWVDAGNLTLPLAAESDSLGIIKAVAGEEEDFSEVGTA
ILCPIKLLLQQQIMGVALFFFGHAFSGRWEDVVRLRDEDIPQWFINSFADVVGGCV