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Lag0041189 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041189
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr13:13456701..13457126
RNA-Seq ExpressionLag0041189
SyntenyLag0041189
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035918.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-0744.87Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDTWLK
        P  ++++VM+    T E RM E+ + +N LMK +EE+D + A LK+ IE+   AESS TQ +KN DKGKT +Q+  L+
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDTWLK
KAA0036729.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]4.3e-0737.14Show/hide
Query:  KASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKT
        K  ++  E  T+     N  F  ++++   P  ++++VM+ +  T E RMAE+++ +N LMKA+EE+D + A LK+ IE+   AESS T  IKN +KGK 
Subjt:  KASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKT

Query:  TVQDT
         +Q++
Subjt:  TVQDT
KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]4.3e-0745.33Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E+RMAE+++ +N LMKA+EE+D + A LK+ IE++  AESS T  IKN +KGK  +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
KAA0050518.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0746.67Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E+RMAE+++ +N LMKA+EEKD + A LK+ IE++  AESS T  IKN +KGK  +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
TYK07338.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-0848Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E RMAE+++ +N LMKA+EE+D + A LK+ IE+   AESS T  IKN DKGKT +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
TrEMBL top hitse value%identityAlignment
A0A5A7SZB7 Ty3-gypsy retrotransposon protein1.2e-0744.87Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDTWLK
        P  ++++VM+    T E RM E+ + +N LMK +EE+D + A LK+ IE+   AESS TQ +KN DKGKT +Q+  L+
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDTWLK
A0A5A7T5T3 Ty3-gypsy retrotransposon protein2.1e-0737.14Show/hide
Query:  KASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKT
        K  ++  E  T+     N  F  ++++   P  ++++VM+ +  T E RMAE+++ +N LMKA+EE+D + A LK+ IE+   AESS T  IKN +KGK 
Subjt:  KASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKT

Query:  TVQDT
         +Q++
Subjt:  TVQDT
A0A5A7TZU9 Ribonuclease H2.1e-0745.33Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E+RMAE+++ +N LMKA+EE+D + A LK+ IE++  AESS T  IKN +KGK  +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
A0A5A7U5H1 Ty3-gypsy retrotransposon protein9.3e-0846.67Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E+RMAE+++ +N LMKA+EEKD + A LK+ IE++  AESS T  IKN +KGK  +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
A0A5D3C857 Ty3-gypsy retrotransposon protein2.5e-0848Show/hide
Query:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
        P  ++++VM+ +  T E RMAE+++ +N LMKA+EE+D + A LK+ IE+   AESS T  IKN DKGKT +Q++
Subjt:  PDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQIENQHIAESSQTQVIKNHDKGKTTVQDT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGTTCAAGACTTCCTCAATAGTCGCTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTAAGTGGACTGAGGTTGCAAGAAGATAAAGCTTCTGT
CATTGCAAGCGAAGAAACAACATTGCAGGGGGTATATACTAATGACAAGTTTATTGTTAAGTATAACCTTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGA
TTGAGACTATAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAACTGCGCAACTAAAGAGTCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATACATGGCTAAAATAA
mRNA sequenceShow/hide mRNA sequence
ATGTCGTTCAAGACTTCCTCAATAGTCGCTGTCATGAACAAGTCTTACATTAGTTCTACTGCCCATTGTTGCTTAAGTGGACTGAGGTTGCAAGAAGATAAAGCTTCTGT
CATTGCAAGCGAAGAAACAACATTGCAGGGGGTATATACTAATGACAAGTTTATTGTTAAGTATAACCTTTTGTTTGAACCTGATTCTGACGTAGTGACTGTCATGATGA
TTGAGACTATAACTATGGAAGAAAGAATGGCTGAGATGCAGGAGCACATCAACACCTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAACTGCGCAACTAAAGAGTCAA
ATTGAGAACCAACATATCGCCGAATCAAGTCAAACACAAGTCATAAAAAATCATGACAAAGGAAAGACTACAGTGCAAGATACATGGCTAAAATAA
Protein sequenceShow/hide protein sequence
MSFKTSSIVAVMNKSYISSTAHCCLSGLRLQEDKASVIASEETTLQGVYTNDKFIVKYNLLFEPDSDVVTVMMIETITMEERMAEMQEHINTLMKAIEEKDSQTAQLKSQ
IENQHIAESSQTQVIKNHDKGKTTVQDTWLK