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Lag0041200 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041200
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr13:13619117..13622400
RNA-Seq ExpressionLag0041200
SyntenyLag0041200
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_023921045.1 uncharacterized protein LOC112032513 [Quercus suber]3.9e-1339.37Show/hide
Query:  RSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFMALG
        + DP++RN+NK C FH DHGH T EC  L+ +IE LIR+G  K F+G D     L A   +    PL EI+ ILGGSS       G+   S++ Y  A+ 
Subjt:  RSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFMALG

Query:  NIDRKAQATSALGDAEAEPLRGQAIPF
        ++    ++ S      AE +  QAI F
Subjt:  NIDRKAQATSALGDAEAEPLRGQAIPF

XP_030923408.1 uncharacterized protein LOC115950338 [Quercus lobata]2.0e-1241.9Show/hide
Query:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM
        EK + DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y  
Subjt:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM

Query:  ALGNI
        A+ N+
Subjt:  ALGNI

XP_030930616.1 uncharacterized protein LOC115956348 [Quercus lobata]2.0e-1237.5Show/hide
Query:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM
        EK R DP++RN+NK C FH DHGH T EC  L+ +IE LIR+G  K F+G D     +     +    PL EI+ I+GGSS       G+   S++ Y  
Subjt:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM

Query:  ALGNIDRKAQATSALGDAEA
         + ++    ++  A    EA
Subjt:  ALGNIDRKAQATSALGDAEA

XP_030936482.1 uncharacterized protein LOC115961685 [Quercus lobata]2.0e-1241.9Show/hide
Query:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM
        EK + DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y  
Subjt:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM

Query:  ALGNI
        A+ N+
Subjt:  ALGNI

XP_030958630.1 uncharacterized protein LOC115980537 [Quercus lobata]2.0e-1241.9Show/hide
Query:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM
        EK + DP++RNKNK C FH DHGH T EC  L+ +IE LIR+G  K FVG D +   L     +    PL EI+ I+GG+        G+   S++ Y  
Subjt:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFM

Query:  ALGNI
        A+ N+
Subjt:  ALGNI

TrEMBL top hitse value%identityAlignment
A0A2N9ED79 Ribonuclease H4.4e-1039.45Show/hide
Query:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPL--LADQGKGGAN---PLFEIQTILGGSSEEGGATHGEQKMSRE
        K RSDP+ R KN  C FH DHGH T +C+ L++++E LIR+G  + +V    + RP   LA + +   N   P+ EI+TI+GG      A+ G  + SR+
Subjt:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPL--LADQGKGGAN---PLFEIQTILGGSSEEGGATHGEQKMSRE

Query:  CYFMALGNI
         Y   + NI
Subjt:  CYFMALGNI

A0A2N9ERC7 Reverse transcriptase4.4e-1038.46Show/hide
Query:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFMA
        K RSDP+ R KN  C FH DHGH T EC+ L++++EALIR+G  + +V      +            P+ EI+TI+GG      A+ G  + SR+ Y   
Subjt:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFMA

Query:  LGNI
        + NI
Subjt:  LGNI

A0A2N9IJ88 Ribonuclease H1.5e-1040.37Show/hide
Query:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGA-----NPLFEIQTILGGSSEEGGATHGEQKMSRE
        K RSDP+ R KN  C FH DHGH T EC+ L+++IE LIR+G  + +V    + RP      +  A      P+ EI+TI+GGS     A+ G  + SR+
Subjt:  KSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGA-----NPLFEIQTILGGSSEEGGATHGEQKMSRE

Query:  CYFMALGNI
         Y   + NI
Subjt:  CYFMALGNI

A0A6J1DXB1 uncharacterized protein LOC1110254121.5e-1042.45Show/hide
Query:  KSREKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEG-GATHGEQKMSRE
        K  EK + DP+RRNK+K C FH +HGH T  C +L+ +IE LI++GY K FVG   S   + +            +  +L  S+  G G   GEQK SRE
Subjt:  KSREKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEEG-GATHGEQKMSRE

Query:  CYFMAL
        CY  AL
Subjt:  CYFMAL

A0A6J1DZ52 uncharacterized protein LOC1110256122.6e-1043.37Show/hide
Query:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEE
        E  ++ P++R+K + C+FH DHGHAT +C  L++E+E LIR+GY K +V +D+   P   +  K   +P  EI+TI+GGS+E+
Subjt:  EKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPLLADQGKGGANPLFEIQTILGGSSEE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCCCCAGCCCCCACTCGGTTTCGTCCCCAAGAAGGATACCCCCGCTCTCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTACCGAATACAAAACAGCGTA
CGAGGAGCTGACAGGACAACCGGGAGGAGATAGGACCAGGAAAGAGACCCAGAGGGAGACCAGACCGACGGGTCGGGCCGGCCCGACCCGTCCGGTCGGCCTCGGCCTTG
GGCCGAGGCCGAGGCCGACCACTCGGCCCGTTTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGTCCAGCCTGCTTCGTCCCAGA
ACGCCTCCAAACCCTAGGAGTCCGAGCAGGTGGATTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATC
GGTGGTGGTCTGCACGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGCGCCGAGCCAGATTGGGGTCGACCTCGGTATGGAAAAGGCCGACC
TGAACTTCGGAGACTGTTGTAAGGATCCGTGTGCCCACGATGCTACAGACCTAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAGAACCGGGAAGCTGCTATATCTGAC
CAGCATCAAGAAGACAAAGGAAAAGGATGTCGAGTAGGAGATGTAGGCCAGATCCGACATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAA
AAAGCCTGCAGAAGTTTGCCGCAAAAGACAGCGTCGGAAAAGTCGAGAAAAGTCGAGATCAGACCCCGATAGGAGGAACAAAAACAAATGCTGCATGTTCCACGGAGACC
ACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACATAAGCAAGAGGCCACTG
CTGGCAGATCAAGGTAAAGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAACGCATGGCGAGCAAAAAATGTCGAG
GGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAAT
GA
mRNA sequenceShow/hide mRNA sequence
ATGTCCCCAGCCCCCACTCGGTTTCGTCCCCAAGAAGGATACCCCCGCTCTCATGTCTCCTACATGGACGCCTTGGATCAATACGTCTGTACCGAATACAAAACAGCGTA
CGAGGAGCTGACAGGACAACCGGGAGGAGATAGGACCAGGAAAGAGACCCAGAGGGAGACCAGACCGACGGGTCGGGCCGGCCCGACCCGTCCGGTCGGCCTCGGCCTTG
GGCCGAGGCCGAGGCCGACCACTCGGCCCGTTTGCACGGGCCGAGTCCGTTTGCCTCCGCTCGGCCCCTACCGCTTCCAGCTGCCTCGGTCCAGCCTGCTTCGTCCCAGA
ACGCCTCCAAACCCTAGGAGTCCGAGCAGGTGGATTGCTTGGCCAAATTTTGGCATCAACAGTTGGCGCCGTCTGTGGGGAAGAATGCTTGCCAGTTCGGATCGCACATC
GGTGGTGGTCTGCACGATGGATCGGGTTCAGAAACCAGAGGGAAGCCTCGGGTATGAGCAGAAAGCGCCGAGCCAGATTGGGGTCGACCTCGGTATGGAAAAGGCCGACC
TGAACTTCGGAGACTGTTGTAAGGATCCGTGTGCCCACGATGCTACAGACCTAACCCAAGAGGACAACCAGCAGAAGGAGAGAGAGAACCGGGAAGCTGCTATATCTGAC
CAGCATCAAGAAGACAAAGGAAAAGGATGTCGAGTAGGAGATGTAGGCCAGATCCGACATGAGCACTCCTCGGCCAATGGCCGAGGCCGAGCAGAAGTCCAATCGCAAAA
AAAGCCTGCAGAAGTTTGCCGCAAAAGACAGCGTCGGAAAAGTCGAGAAAAGTCGAGATCAGACCCCGATAGGAGGAACAAAAACAAATGCTGCATGTTCCACGGAGACC
ACGGTCATGCAACCCGGGAATGCATACAGTTGAGGGACGAGATAGAAGCCCTAATCCGAGAAGGTTACCCCAAGGGGTTCGTGGGGAACGACATAAGCAAGAGGCCACTG
CTGGCAGATCAAGGTAAAGGCGGTGCCAACCCGCTATTCGAGATACAAACAATTTTAGGAGGATCATCCGAAGAAGGTGGAGCAACGCATGGCGAGCAAAAAATGTCGAG
GGAATGTTACTTTATGGCGCTCGGGAACATCGACAGGAAGGCTCAAGCAACGTCGGCCTTGGGAGATGCCGAGGCCGAGCCTTTGAGGGGTCAAGCTATCCCCTTCCAAT
GA
Protein sequenceShow/hide protein sequence
MSPAPTRFRPQEGYPRSHVSYMDALDQYVCTEYKTAYEELTGQPGGDRTRKETQRETRPTGRAGPTRPVGLGLGPRPRPTTRPVCTGRVRLPPLGPYRFQLPRSSLLRPR
TPPNPRSPSRWIAWPNFGINSWRRLWGRMLASSDRTSVVVCTMDRVQKPEGSLGYEQKAPSQIGVDLGMEKADLNFGDCCKDPCAHDATDLTQEDNQQKERENREAAISD
QHQEDKGKGCRVGDVGQIRHEHSSANGRGRAEVQSQKKPAEVCRKRQRRKSREKSRSDPDRRNKNKCCMFHGDHGHATRECIQLRDEIEALIREGYPKGFVGNDISKRPL
LADQGKGGANPLFEIQTILGGSSEEGGATHGEQKMSRECYFMALGNIDRKAQATSALGDAEAEPLRGQAIPFQ