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Lag0041210 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041210
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description30S ribosomal protein S17, chloroplastic
Genome locationchr13:13785339..13785981
RNA-Seq ExpressionLag0041210
SyntenyLag0041210
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR000266 - Ribosomal protein S17/S11
IPR012340 - Nucleic acid-binding, OB-fold
IPR019984 - 30S ribosomal protein S17


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041013.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]8.6e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

KAE8649314.1 hypothetical protein Csa_015070 [Cucumis sativus]2.8e-4391.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHWVVAEILRKARIY PPSQD Q  SVSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

TYK20371.1 30S ribosomal protein S17-like [Cucumis melo var. makuwa]8.6e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

XP_016903240.1 PREDICTED: 30S ribosomal protein S17-like [Cucumis melo]8.6e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

XP_022155383.1 uncharacterized protein LOC111022528 [Momordica charantia]5.6e-4491.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIYVPPSQD+QT   SDKSKA+
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

TrEMBL top hitse value%identityAlignment
A0A1S4E5I9 30S ribosomal protein S17, chloroplastic4.2e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A5A7TD01 30S ribosomal protein S17, chloroplastic4.2e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A5D3D9X1 30S ribosomal protein S17, chloroplastic4.2e-4593.33Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIY PPSQDNQT  VSDKS  S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A6J1DMT5 30S ribosomal protein S17, chloroplastic2.7e-4491.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK KHW+VAEILRKARIYVPPSQD+QT   SDKSKA+
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

A0A6J1JP01 30S ribosomal protein S17, chloroplastic1.1e-4289.52Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRY+KRTSKFMAHDENNQCNIGDRVKLDPSRPLSK K WVVAEILRKARIY PPSQ+NQ   VSDK K S
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        +PSTT
Subjt:  SPSTT

SwissProt top hitse value%identityAlignment
A7HM43 30S ribosomal protein S176.4e-1947.42Show/hide
Query:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSK
        K++VG+VVS+KM K+V V V+RL  H  + +Y+KRT KF AHDENN C +GD V+++ SRPLSK K WVV  IL ++++   P +  +T+ +   S+
Subjt:  KQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSK

B1I1J7 30S ribosomal protein S177.6e-2061.33Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        G VVS+KM K+VVVAVD L  H LY R ++RT KFMAHDE+NQC IGD+VK+  +RPLS+ K W VAE+L +++I
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q1LTC9 30S ribosomal protein S178.4e-1956.16Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        G VVSNKM KS+VVA++R+  H +Y +YIKRT+K  AHDENN CNIGD +++   RP+SK K W++  I+ KA
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Q6LVA7 30S ribosomal protein S176.4e-1953.95Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI
        +G V+S+KM KS+VVA++R+  H +Y +YIKRT+K  AHDENN+CN+GD V++   RPLSK K W +  I+ KAR+
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARI

Q8R7W3 30S ribosomal protein S171.4e-1856.76Show/hide
Query:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        +G VVSNKMQK++VVAV+  F H LY + +KRT K+  HDENN CN+GD VK+  +RPLSK K W + E+++KA
Subjt:  VGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

Arabidopsis top hitse value%identityAlignment
AT1G49400.1 Nucleic acid-binding, OB-fold-like protein1.7e-3571.43Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS
        MK V+G VVSNKMQKSVVVAVDRLF++K+YNRY+KRTSKFMAHD+ + CNIGDRVKLDPSRPLSK KHW+VAEI++KARIY P +      +VS  + AS
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKAS

Query:  SPSTT
        S STT
Subjt:  SPSTT

AT1G79850.1 ribosomal protein S177.3e-1041.03Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA
        MK + G VV     K+V V V RL  H  Y R ++   K+ AHD +NQ  +GD V+L+ SRP+SK K +V   ++ +A
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKA

AT3G18880.1 Nucleic acid-binding, OB-fold-like protein1.6e-3366.35Show/hide
Query:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQD---NQTVSVSDKS
        MK V+G VVSNKMQ SVVVAVDRLF++ +YNRY+KRTSKFMAHDE + CNIGDRVKLDPSRPLSK KHW+V+EI++KARIY P +     N + S++++ 
Subjt:  MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQD---NQTVSVSDKS

Query:  KASS
          SS
Subjt:  KASS

AT4G30800.1 Nucleic acid-binding, OB-fold-like protein2.7e-0438.03Show/hide
Query:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL
        G   S KMQ++++V  D L + K Y RY KR S   AH     +   GDRV +   RPLSK   + V +++
Subjt:  GMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAH-DENNQCNIGDRVKLDPSRPLSKRKHWVVAEIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAGTCGGTGGTGGTTGCAGTGGATAGGTTGTTCTATCACAAGCTCTATAATCGTTACATTAAACGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGACAACCAGACTGTTTCTGTTTCCGACAAAAGCAAAGCTTCATCTCCTTCAACCACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAAGCAGGTAGTGGGGATGGTGGTCTCAAACAAAATGCAGAAGTCGGTGGTGGTTGCAGTGGATAGGTTGTTCTATCACAAGCTCTATAATCGTTACATTAAACGCAC
TTCCAAGTTCATGGCTCATGACGAGAACAACCAGTGCAATATTGGTGACAGGGTTAAACTAGACCCTTCTAGGCCGTTGAGCAAGCGTAAACATTGGGTGGTTGCTGAAA
TTTTGAGGAAAGCACGAATTTACGTACCACCATCACAAGACAACCAGACTGTTTCTGTTTCCGACAAAAGCAAAGCTTCATCTCCTTCAACCACCTAA
Protein sequenceShow/hide protein sequence
MKQVVGMVVSNKMQKSVVVAVDRLFYHKLYNRYIKRTSKFMAHDENNQCNIGDRVKLDPSRPLSKRKHWVVAEILRKARIYVPPSQDNQTVSVSDKSKASSPSTT