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Lag0041221 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041221
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:13929233..13930724
RNA-Seq ExpressionLag0041221
SyntenyLag0041221
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046209.1 gag protease polyprotein [Cucumis melo var. makuwa]6.0e-2258.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   QR+R++ +S+ K F E N+D KIHS V SRMKRK  V INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

TYK09793.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.6e-2258.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

TYK14888.1 gag protease polyprotein [Cucumis melo var. makuwa]1.6e-2258.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

TYK19713.1 gag protease polyprotein [Cucumis melo var. makuwa]6.0e-2258.56Show/hide
Query:  MAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNLII
        MA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  II
Subjt:  MAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNHTNEGPDQ
         TN TNEG +Q
Subjt:  LTNHTNEGPDQ

TYK28989.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-2157.52Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q LT   TR S F+RLS+STS+K RPS + F RLK+   Q++R++ + + K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

TrEMBL top hitse value%identityAlignment
A0A5A7TY80 Gag protease polyprotein2.9e-2258.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   QR+R++ +S+ K F E N+D KIHS V SRMKRK  V INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

A0A5D3CD55 Ty3-gypsy retrotransposon protein7.6e-2358.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

A0A5D3CUI5 Gag protease polyprotein7.6e-2358.41Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

A0A5D3D881 Gag protease polyprotein2.9e-2258.56Show/hide
Query:  MAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNLII
        MA   EE+Q  T   TR S F+RLS+STS+K RPST+ F RLK+   Q++R++ +S+ K F E N+D KIHS V SRMKRK SV INTEGSL VKP  II
Subjt:  MAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNLII

Query:  LTNHTNEGPDQ
         TN TNEG +Q
Subjt:  LTNHTNEGPDQ

A0A5D3DZZ8 Retrotransposon gag protein5.0e-2257.52Show/hide
Query:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL
        +SMA   EE+Q LT   TR S F+RLS+STS+K RPS + F RLK+   Q++R++ + + K F E N+D KIHS V SRMKRK SV INTEGSL VKP  
Subjt:  MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNL

Query:  IILTNHTNEGPDQ
        II TN TNEG +Q
Subjt:  IILTNHTNEGPDQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCTGCAGCAAGAGAAGAAGATCAAAGCTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTC
AACGACTGTTTTTTATCGCCTCAAAGTAAGAGGCGGCCAACGTGAAAGAAAGGTGGACAATTCAGAAGTAAAATTATTCGATGAAGTAAACAATGACAAGAAGATTCATA
GTACCGTTTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCATACAAATGAAGGA
CCTGATCAAGACTATGTTTGCATTCTTCATGCTTCAAGTTTGGTGTTCCGCTCGCTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGAGATTGCTCCATTCAAGTTTG
GCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACAGTTGAATGCT
TTGCTTTTGCTTCATTTCAAAAGTTGACGATTGGTGGCCCCGCATCTTCTTCAAAGTTGACGGTTGGCGACCTCGCTCCTTCTTCAAAGTTGACGGTTGACAACTTCATT
TCAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCTGCAGCAAGAGAAGAAGATCAAAGCTTGACGTCCGCCATCACTCGACATTCAGTTTTCCAAAGACTAAGCGTCTCTACATCAAGAAAGTGTCGACCTTC
AACGACTGTTTTTTATCGCCTCAAAGTAAGAGGCGGCCAACGTGAAAGAAAGGTGGACAATTCAGAAGTAAAATTATTCGATGAAGTAAACAATGACAAGAAGATTCATA
GTACCGTTTCGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAACACAGAAGGTTCCTTGAAGGTGAAACCAAATCTTATCATTTTGACAAATCATACAAATGAAGGA
CCTGATCAAGACTATGTTTGCATTCTTCATGCTTCAAGTTTGGTGTTCCGCTCGCTCAAAGTTCGACGTCTCACCTTCTCCACGTTCGGAGATTGCTCCATTCAAGTTTG
GCTTATCACTTGTCCCAAGTTCGATACCTCGCTTCACCTTCAAAGGGTGGCATTTGAAGGCTTCGTTTTCACTTCATCTTCAAATCTTCAAAGGTTGACAGTTGAATGCT
TTGCTTTTGCTTCATTTCAAAAGTTGACGATTGGTGGCCCCGCATCTTCTTCAAAGTTGACGGTTGGCGACCTCGCTCCTTCTTCAAAGTTGACGGTTGACAACTTCATT
TCAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGA
Protein sequenceShow/hide protein sequence
MSMAAAREEDQSLTSAITRHSVFQRLSVSTSRKCRPSTTVFYRLKVRGGQRERKVDNSEVKLFDEVNNDKKIHSTVSSRMKRKFSVLINTEGSLKVKPNLIILTNHTNEG
PDQDYVCILHASSLVFRSLKVRRLTFSTFGDCSIQVWLITCPKFDTSLHLQRVAFEGFVFTSSSNLQRLTVECFAFASFQKLTIGGPASSSKLTVGDLAPSSKLTVDNFI
SKLAVGDFHFIFKS