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Lag0041243 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041243
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Descriptioncleavage and polyadenylation specificity factor subunit 3-II
Genome locationchr13:14311531..14315915
RNA-Seq ExpressionLag0041243
SyntenyLag0041243
Gene Ontology termsGO:0010197 - polar nucleus fusion (biological process)
GO:0005634 - nucleus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR036866 - Ribonuclease Z/Hydroxyacylglutathione hydrolase-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7011001.1 Cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita argyrosperma subsp. argyrosperma]1.8e-29100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

XP_022944196.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucurbita moschata]1.8e-29100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

XP_022986472.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X1 [Cucurbita maxima]1.8e-29100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

XP_022986474.1 cleavage and polyadenylation specificity factor subunit 3-II isoform X2 [Cucurbita maxima]1.8e-29100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

XP_023513382.1 cleavage and polyadenylation specificity factor subunit 3-II [Cucurbita pepo subsp. pepo]1.8e-29100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

TrEMBL top hitse value%identityAlignment
A0A6J1DMR3 cleavage and polyadenylation specificity factor subunit 3-II3.4e-2996.97Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVA GGKVLIPTFALGRAQELCILLDDYWERMNLK+PIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

A0A6J1FTR8 cleavage and polyadenylation specificity factor subunit 3-II isoform X28.8e-30100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

A0A6J1FYI7 cleavage and polyadenylation specificity factor subunit 3-II isoform X18.8e-30100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

A0A6J1J7M0 cleavage and polyadenylation specificity factor subunit 3-II isoform X18.8e-30100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

A0A6J1JG52 cleavage and polyadenylation specificity factor subunit 3-II isoform X28.8e-30100Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

SwissProt top hitse value%identityAlignment
Q54YL3 Integrator complex subunit 11 homolog5.3e-2471.62Show/hide
Query:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNL-KIPIYFSA
        P  +   +TYATTIRDSK GRER+FLK +H CV  GGKVLIP FALGR QELCIL+D YWE+MNL  IPIYFSA
Subjt:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNL-KIPIYFSA

Q5TA45 Integrator complex subunit 117.0e-2473.61Show/hide
Query:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS
        P  +   STYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQELCILL+ +WERMNLK+PIYFS
Subjt:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS

Q8GUU3 Cleavage and polyadenylation specificity factor subunit 3-II5.2e-2783.33Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIR SKY REREFL+AVH CVA GGK LIP+FALGRAQELC+LLDDYWERMN+K+PIYFS+
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA

Q9CWS4 Integrator complex subunit 117.0e-2473.61Show/hide
Query:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS
        P  +   STYATTIRDSK  RER+FLK VH  V  GGKVLIP FALGRAQELCILL+ +WERMNLK+PIYFS
Subjt:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS

Q9VAH9 Integrator complex subunit 112.8e-2576.39Show/hide
Query:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS
        P  +   STYATTIRDSK  RER+FLK VH CVA GGKVLIP FALGRAQELCILL+ YWERMNLK PIYF+
Subjt:  PMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFS

Arabidopsis top hitse value%identityAlignment
AT1G61010.1 cleavage and polyadenylation specificity factor 73-I4.8e-1243.21Show/hide
Query:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA
        ICI+         ST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL ++LD+YW        IPIY+++
Subjt:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA

AT1G61010.2 cleavage and polyadenylation specificity factor 73-I4.8e-1243.21Show/hide
Query:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA
        ICI+         ST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL ++LD+YW        IPIY+++
Subjt:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA

AT1G61010.3 cleavage and polyadenylation specificity factor 73-I4.8e-1243.21Show/hide
Query:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA
        ICI+         ST    +  S++ RE+ F   +H+ VA GG+VLIP FALGRAQEL ++LD+YW        IPIY+++
Subjt:  ICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMN--LKIPIYFSA

AT2G01730.1 cleavage and polyadenylation specificity factor 73 kDa subunit-II3.7e-2883.33Show/hide
Query:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA
        STYATTIR SKY REREFL+AVH CVA GGK LIP+FALGRAQELC+LLDDYWERMN+K+PIYFS+
Subjt:  STYATTIRDSKYGREREFLKAVHNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTGTCGTAGTGAAGTATGCTATGTCATATGGGTTGAGATTGGACTTAAGGGTTAACAATCAAGAAGAGGTCAACAACCGTGCAAGAAACCATCCATCAAATTCTCT
AGATGAGGCAAGGGCAGTAGCAAATCCTATTAGGAACCAAGAATTCGAGGACCTCAAATTGGGAACGAAGATTCTAAATTCTCAAGTACTTCAGCATGTGTGTTCACTGC
AACAAATTTGTATTGTTAATCTTCCAATGTTTGTCTTCCGCAGGTCTACATATGCAACAACCATCCGTGATTCTAAATATGGCCGCGAAAGAGAATTTCTTAAAGCTGTT
CATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAA
GATTCCAATATACTTTTCAGCAGACCAAAGGCCAAGAATAATCATTTCGAGAAAGGAAAGTCGAAAGTTGCAAAGGGCTCGACCAGAGAAGGGAAAAGAGGAAAGAATAG
CTTCTGTCGTGGACCATGGATTAGTTGGGTCATCGAACAATTTAGCTTCTGTGTTAGCCATGGATCAACTAGGCCATCGAACAAGAGTTCAAATTCTCAGGGCCTTTGTG
GAATCCAACCGGAAGAAGAAAGCCAGAAGGAGAAGTGAAGAGATTCTGGCGAAATCTACCAATGGGAATAATTTGTTGGGGCTTAGTCTCGAAGGAGAAGGTCTCTGCCT
TTCAATGTTGGACCCTTTGGTGATGAGTGGATCCGATGACGATTCGTTTTTGTCCTCGTCGATGGTCAGAGAGCTTGGGGAAATGACCCTTCTATTGCTTTTTGAGGATT
CGGCTGAAGCTTCGGTGAAGATTGTCCCTGAGACCACGTCGTTCGAAGATCAAAGTGAGGATGCGCCATTGGGAGAGCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGACTGTCGTAGTGAAGTATGCTATGTCATATGGGTTGAGATTGGACTTAAGGGTTAACAATCAAGAAGAGGTCAACAACCGTGCAAGAAACCATCCATCAAATTCTCT
AGATGAGGCAAGGGCAGTAGCAAATCCTATTAGGAACCAAGAATTCGAGGACCTCAAATTGGGAACGAAGATTCTAAATTCTCAAGTACTTCAGCATGTGTGTTCACTGC
AACAAATTTGTATTGTTAATCTTCCAATGTTTGTCTTCCGCAGGTCTACATATGCAACAACCATCCGTGATTCTAAATATGGCCGCGAAAGAGAATTTCTTAAAGCTGTT
CATAATTGTGTGGCTAGTGGAGGGAAGGTCCTTATTCCTACTTTTGCACTTGGACGGGCTCAGGAACTCTGTATCTTGTTGGATGACTATTGGGAGCGCATGAATCTAAA
GATTCCAATATACTTTTCAGCAGACCAAAGGCCAAGAATAATCATTTCGAGAAAGGAAAGTCGAAAGTTGCAAAGGGCTCGACCAGAGAAGGGAAAAGAGGAAAGAATAG
CTTCTGTCGTGGACCATGGATTAGTTGGGTCATCGAACAATTTAGCTTCTGTGTTAGCCATGGATCAACTAGGCCATCGAACAAGAGTTCAAATTCTCAGGGCCTTTGTG
GAATCCAACCGGAAGAAGAAAGCCAGAAGGAGAAGTGAAGAGATTCTGGCGAAATCTACCAATGGGAATAATTTGTTGGGGCTTAGTCTCGAAGGAGAAGGTCTCTGCCT
TTCAATGTTGGACCCTTTGGTGATGAGTGGATCCGATGACGATTCGTTTTTGTCCTCGTCGATGGTCAGAGAGCTTGGGGAAATGACCCTTCTATTGCTTTTTGAGGATT
CGGCTGAAGCTTCGGTGAAGATTGTCCCTGAGACCACGTCGTTCGAAGATCAAAGTGAGGATGCGCCATTGGGAGAGCAATAA
Protein sequenceShow/hide protein sequence
MTVVVKYAMSYGLRLDLRVNNQEEVNNRARNHPSNSLDEARAVANPIRNQEFEDLKLGTKILNSQVLQHVCSLQQICIVNLPMFVFRRSTYATTIRDSKYGREREFLKAV
HNCVASGGKVLIPTFALGRAQELCILLDDYWERMNLKIPIYFSADQRPRIIISRKESRKLQRARPEKGKEERIASVVDHGLVGSSNNLASVLAMDQLGHRTRVQILRAFV
ESNRKKKARRRSEEILAKSTNGNNLLGLSLEGEGLCLSMLDPLVMSGSDDDSFLSSSMVRELGEMTLLLLFEDSAEASVKIVPETTSFEDQSEDAPLGEQ