CuGenDBv2

Gene ID	Lag0041249
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	28S ribosomal protein S33, mitochondrial
Genome location	chr13:14403471..14409175
RNA-Seq Expression	Lag0041249
Synteny	Lag0041249
Gene Ontology terms	GO:0005739 - mitochondrion (cellular component) GO:0005840 - ribosome (cellular component)
InterPro domains	IPR013219 - Ribosomal protein S27/S33, mitochondrial

Homology

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GenBank top hits

e value

%identity

Alignment

KAE8652638.1 hypothetical protein Csa_013164 [Cucumis sativus]

1.6e-46

93.52

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Query:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG
        GK +ERMATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.0e-45

90.74

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Query:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG
        GK +ERMATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]

4.3e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]

3.3e-44

96.08

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

XP_031745997.1 uncharacterized protein LOC101219254 isoform X1 [Cucumis sativus]

1.6e-46

93.52

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Query:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG
        GK +ERMATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQG
Subjt:  GKSKERMATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQG

Query:  RRAAKRNK
        RRAAKRNK
Subjt:  RRAAKRNK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LRA7 Uncharacterized protein

2.1e-44

95.1

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAVNKGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A5A7UM66 28S ribosomal protein S33

1.8e-43

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKS++AAAV+KGVTEARARIFGH+LNPTG RSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR EQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1C6H4 28S ribosomal protein S33, mitochondrial

1.6e-44

96.08

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLKSI+A AVN GVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1EDC3 28S ribosomal protein S33, mitochondrial

1.0e-43

92.16

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAA+NKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

A0A6J1KNI8 28S ribosomal protein S33, mitochondrial

4.6e-44

93.14

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MATNSLK ++AAAVNKGVTEARARIFGHVLNPTG RSTHKLLRKKLIGDKV++WYPYDIKKDDPL+MARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

SwissProt top hits

e value

%identity

Alignment

P53305 Mitochondrial 37S ribosomal protein S27

2.6e-04

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Query:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA
        V E  A+IF    NP+G+R+  K+L ++L G  V+ +Y   DI K         D   +  +EQ RLS +E  KRRGKG PKK +   AA
Subjt:  VTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPY-DIKK--------DDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAA

Arabidopsis top hits

e value

%identity

Alignment

AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).

2.6e-39

76.47

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Query:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR
        MA+ SLKS++++AV +GVTEARARIFGH+LNPTG RS HK+LRKKLIGDKV++WYPYDIK +DP V+AR+E+ER+SKLEMLKRR KGPPKKG G+RAAKR
Subjt:  MATNSLKSIVAAAVNKGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences

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CDS sequence

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ATGTTTGAGCCGTTGGGTGCTGTCAGGTACAAATGGTCGAGGGGTGGTATGTCACCAATGGATTTAAGGGGAGCATCGAGGCCTTGGGTACAAATGGTCAATGGTCGGTG
TGATGAGCTTAGAAAAGCAAGTATTGGAGTGCCTGGGAAAGGGCCAGGTCGAACACCGAGCTCCATAGAGAAGCCTGAGGCTCTGGGTGTGAGCCACTTACACAGGTGTG
ATCCTCCACCAGGTTTTGCAGATGATGAGATCATACTCGGACTTGGAATCAAGAGCCCACCTAGTAAGTTGGGATGTGGTGGGAAAACCTGTTTACCTTGGAGGTCCGGA
GACTGGGAACCGGAAGTGACAAATGTCATGACTCTTCTTTCTTTGATTGAGGAGTTTGAGTTCAGGCGGAGGAAAACTTGGATCATATTTTGTGGAGATGTGCTTTTGGT
CGCTCAATTTGGAAGTTTTTTTTGGCTCTTTTGGGAGACAACCGTTGGTCTTTCAGGATGCGAGGGCGATGATCGAAGAGTTCCTTCTCCATCCGATTTACCGAGACAAA
GGAGGATTCTTGTGGCAAGATGGCATGTTGGCGCTTTTATGGAACTTGGAAAATCGAAAGAGAGGATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCCGCAGTCAAT
AAGGGAGTGACAGAAGCCAGGGCAAGGATATTTGGTCATGTACTTAACCCAACAGGGCTACGATCTACCCACAAGCTTCTGCGCAAAAAACTTATTGGTGACAAAGTGTC
ACAGTGGTATCCATACGACATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAACAAGAGCGCTTGTCCAAGCTTGAAATGCTGAAGCGGCGTGGTAAAGGACCAC
CTAAGAAGGGCCAAGGCAGGCGTGCGGCCAAGCGCAATAAGTAG

mRNA sequence

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Protein sequence

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MFEPLGAVRYKWSRGGMSPMDLRGASRPWVQMVNGRCDELRKASIGVPGKGPGRTPSSIEKPEALGVSHLHRCDPPPGFADDEIILGLGIKSPPSKLGCGGKTCLPWRSG
DWEPEVTNVMTLLSLIEEFEFRRRKTWIIFCGDVLLVAQFGSFFWLFWETTVGLSGCEGDDRRVPSPSDLPRQRRILVARWHVGAFMELGKSKERMATNSLKSIVAAAVN
KGVTEARARIFGHVLNPTGLRSTHKLLRKKLIGDKVSQWYPYDIKKDDPLVMARQEQERLSKLEMLKRRGKGPPKKGQGRRAAKRNK

Lag0041249 (gene) of Sponge gourd (AG-4) v1 genome