; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041258 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041258
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr13:14583903..14585221
RNA-Seq ExpressionLag0041258
SyntenyLag0041258
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039950.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]3.8e-3233Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ I SP E+GGLG++ ++  N +LL KW+W+F  EKD +W+++I++KY   K    P      S+  PWKA+ +     Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G+  L +  P L+ LS  K+  V +FWNPS+  W+L + R L + E N W ++   L +        K  W+L+ N  F + S+ +
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
KAA0041397.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]9.1e-3433.33Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ + SP E+GGLG++ +H  N +LL KW+W+F  EK+ +W+++I++KY   K    P +    S+  PWKA+       Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G++ L +  P L+ LS  K+  V D WNPS K WN+ + R L + E N W ++   L +        K  W L+ N  F + S+ K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  E
        +
Subjt:  E
KAA0044556.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.5e-3333.33Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ + SP E+GGLG++ +H  N +LL KW+W+F  EK+ +W+++I++KY   K    P +    S+  PWKA+       Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G++ L +  P L+ LS  K+  V D WNPS K WN+ + R L + E N W ++   L +        K  W L+ N  F + S+ K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  E
        +
Subjt:  E
KAA0058105.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]5.5e-3134.65Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G+ G +GSHL+NW ++  P EEGGLG+  +   N +LL+KW+WR+H E +++WR++I  KY        P   +  SSK PW++I    D   +N  + L
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         NG    FW   W     L   +P L+ LS+ KE+ + D WN +   W +  RR LN+ E + W  +  +L          K  W  D    FS  S  K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  EC
         C
Subjt:  EC
TYK00493.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.2e-3033.99Show/hide
Query:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFT
        +G+ G +GSHL+NW ++  P EEGGLG+  +   N +LL+KW+WR++ E +++WR++I  KY        P   +  SSK PW++I    D   +N  + 
Subjt:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFT

Query:  LGNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLT
        L NG    FW   W     L   +P L+ LS+ KE+ + D WN +   W +  RR LN+ E + W  +  +L          K  W  D    FS  S  
Subjt:  LGNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLT

Query:  KEC
        K C
Subjt:  KEC
TrEMBL top hitse value%identityAlignment
A0A5A7T9I7 LINE-1 retrotransposable element ORF2 protein1.8e-3233Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ I SP E+GGLG++ ++  N +LL KW+W+F  EKD +W+++I++KY   K    P      S+  PWKA+ +     Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G+  L +  P L+ LS  K+  V +FWNPS+  W+L + R L + E N W ++   L +        K  W+L+ N  F + S+ +
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
A0A5A7TIB8 LINE-1 retrotransposable element ORF2 protein4.4e-3433.33Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ + SP E+GGLG++ +H  N +LL KW+W+F  EK+ +W+++I++KY   K    P +    S+  PWKA+       Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G++ L +  P L+ LS  K+  V D WNPS K WN+ + R L + E N W ++   L +        K  W L+ N  F + S+ K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  E
        +
Subjt:  E
A0A5A7TR15 LINE-1 retrotransposable element ORF2 protein7.5e-3433.33Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G        L+ W+ + SP E+GGLG++ +H  N +LL KW+W+F  EK+ +W+++I++KY   K    P +    S+  PWKA+       Y NI + +
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         +G    FW + W G++ L +  P L+ LS  K+  V D WNPS K WN+ + R L + E N W ++   L +        K  W L+ N  F + S+ K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  E
        +
Subjt:  E
A0A5A7UWW1 LINE-1 retrotransposable element ORF2 protein2.7e-3134.65Show/hide
Query:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL
        G+ G +GSHL+NW ++  P EEGGLG+  +   N +LL+KW+WR+H E +++WR++I  KY        P   +  SSK PW++I    D   +N  + L
Subjt:  GNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTL

Query:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK
         NG    FW   W     L   +P L+ LS+ KE+ + D WN +   W +  RR LN+ E + W  +  +L          K  W  D    FS  S  K
Subjt:  GNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTK

Query:  EC
         C
Subjt:  EC
A0A5D3BL61 LINE-1 retrotransposable element ORF2 protein5.9e-3133.99Show/hide
Query:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFT
        +G+ G +GSHL+NW ++  P EEGGLG+  +   N +LL+KW+WR++ E +++WR++I  KY        P   +  SSK PW++I    D   +N  + 
Subjt:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFT

Query:  LGNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLT
        L NG    FW   W     L   +P L+ LS+ KE+ + D WN +   W +  RR LN+ E + W  +  +L          K  W  D    FS  S  
Subjt:  LGNGHSTMFWEEQWLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLT

Query:  KEC
        K C
Subjt:  KEC
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein5.5e-1328.31Show/hide
Query:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKG-PWKAIYKMQDLIYNNIVF
        R  Q ++G H   WD +     EGG+G  DI   N++LL K +WR     +++  K+  ++Y   KS+  P  + L S     WK+I+  Q+++      
Subjt:  RGNQGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKG-PWKAIYKMQDLIYNNIVF

Query:  TLGNGHSTMFWEEQWL----GSTTLRIQ-FPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEE
         +GNG   + W  +WL     S  LR+Q  P   + S+     V+D  + S + W   +  +L  E
Subjt:  TLGNGHSTMFWEEQWL----GSTTLRIQ-FPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEE

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTTGGCACCGCTGTCGTCAGAATTCGTCGCTGCCACCGTTGCCAAGGTCTGTTATTGGAAGATTGTTTTCATCACCACCCAACTCATTAGAAAGATCAATCGTCG
ATTAGTAGAAACCCAAAATCTGGCTCGAAAGTCTTCACCATGTGGGCCGCATGTGTCGTCTATTCTAGCTCGACCCCAAAATATCTTCTGGTTTAACCATTTGTTTGAAA
TTAACGGTGAGCATTGGTACATGGGGTTGGATTGTACTAATCTCTCCCATGGAGCATTTGAGTTGCGACATGTGAAACACATCATGGATCGAAGTTTCAAGAGAGGGAAC
CAAGGTTCCAGAGGAAGCCACCTTTTAAATTGGGACCTTATAAAATCTCCCATTGAGGAAGGAGGCTTGGGTTTATATGACATCCACAAAAAGAACATATCCCTCTTAGC
AAAATGGATTTGGAGGTTTCATATTGAAAAAGATGCTATTTGGAGGAAGATTATTGTGGCTAAATATGGGGTCTCAAAAAGCAATCTTAAACCGGGGAAATCAACCTTAT
ATTCTTCCAAGGGTCCATGGAAAGCTATATACAAGATGCAAGATCTGATTTACAACAACATTGTTTTTACATTGGGCAATGGGCATTCTACTATGTTCTGGGAGGAGCAA
TGGCTGGGATCCACAACCCTTCGGATACAATTTCCCCATCTATATCATCTTTCTCTTAAGAAAGAAGCCCTTGTTGCAGATTTCTGGAACCCCTCCACAAAAGCTTGGAA
TTTACCGCTCAGAAGACTTTTGAATGAAGAAGAAACAAATGAATGGGCTAGCTTGTCCCACCATCTAACCTCCTTCTCCATCATAGATGAGGTCGACAAATGGGCTTGGT
CCCTGGACAAAAATGGAGCTTTTTCTTCTGGATCCCTCACTAAAGAATGCGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGACTTGGCACCGCTGTCGTCAGAATTCGTCGCTGCCACCGTTGCCAAGGTCTGTTATTGGAAGATTGTTTTCATCACCACCCAACTCATTAGAAAGATCAATCGTCG
ATTAGTAGAAACCCAAAATCTGGCTCGAAAGTCTTCACCATGTGGGCCGCATGTGTCGTCTATTCTAGCTCGACCCCAAAATATCTTCTGGTTTAACCATTTGTTTGAAA
TTAACGGTGAGCATTGGTACATGGGGTTGGATTGTACTAATCTCTCCCATGGAGCATTTGAGTTGCGACATGTGAAACACATCATGGATCGAAGTTTCAAGAGAGGGAAC
CAAGGTTCCAGAGGAAGCCACCTTTTAAATTGGGACCTTATAAAATCTCCCATTGAGGAAGGAGGCTTGGGTTTATATGACATCCACAAAAAGAACATATCCCTCTTAGC
AAAATGGATTTGGAGGTTTCATATTGAAAAAGATGCTATTTGGAGGAAGATTATTGTGGCTAAATATGGGGTCTCAAAAAGCAATCTTAAACCGGGGAAATCAACCTTAT
ATTCTTCCAAGGGTCCATGGAAAGCTATATACAAGATGCAAGATCTGATTTACAACAACATTGTTTTTACATTGGGCAATGGGCATTCTACTATGTTCTGGGAGGAGCAA
TGGCTGGGATCCACAACCCTTCGGATACAATTTCCCCATCTATATCATCTTTCTCTTAAGAAAGAAGCCCTTGTTGCAGATTTCTGGAACCCCTCCACAAAAGCTTGGAA
TTTACCGCTCAGAAGACTTTTGAATGAAGAAGAAACAAATGAATGGGCTAGCTTGTCCCACCATCTAACCTCCTTCTCCATCATAGATGAGGTCGACAAATGGGCTTGGT
CCCTGGACAAAAATGGAGCTTTTTCTTCTGGATCCCTCACTAAAGAATGCGAGTAA
Protein sequenceShow/hide protein sequence
MDLAPLSSEFVAATVAKVCYWKIVFITTQLIRKINRRLVETQNLARKSSPCGPHVSSILARPQNIFWFNHLFEINGEHWYMGLDCTNLSHGAFELRHVKHIMDRSFKRGN
QGSRGSHLLNWDLIKSPIEEGGLGLYDIHKKNISLLAKWIWRFHIEKDAIWRKIIVAKYGVSKSNLKPGKSTLYSSKGPWKAIYKMQDLIYNNIVFTLGNGHSTMFWEEQ
WLGSTTLRIQFPHLYHLSLKKEALVADFWNPSTKAWNLPLRRLLNEEETNEWASLSHHLTSFSIIDEVDKWAWSLDKNGAFSSGSLTKECE