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Lag0041289 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041289
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr13:15039999..15050196
RNA-Seq ExpressionLag0041289
SyntenyLag0041289
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_024962120.1 uncharacterized protein LOC112502446 [Cynara cardunculus var. scolymus]2.1e-1150Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLREL
        DYVSKWVEA+ACH NDAKTV +FLQ HIF RFGTPRAL+SDE          ++  +       A A    + G   L E+S RE+
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLREL

XP_024962710.1 uncharacterized protein LOC112502921 [Cynara cardunculus var. scolymus]3.0e-1047.67Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLREL
        DYVSKWVEA+ACH NDAK V +FLQ HIF  FGTPRAL+SDE+         ++  +       A A    + G   L E+S RE+
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLREL

XP_024963106.1 uncharacterized protein LOC112503277 [Cynara cardunculus var. scolymus]8.0e-1180.95Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE
        DYVSKWVEA+ACH NDAKTV +FLQ HIF RFG PRAL+SDE
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE

XP_024964983.1 protein NYNRIN-like [Cynara cardunculus var. scolymus]5.5e-1281.82Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAA
        DYVSKWVEA+ACH NDAKTV +FLQ HIF RFGTPRAL+SDE A
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAA

XP_024965836.1 uncharacterized protein K02A2.6-like [Cynara cardunculus var. scolymus]1.8e-1082.5Show/hide
Query:  VSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE
        VSKWVEA+ACH NDAKTV++FLQ HIF+RFGTPRAL+SDE
Subjt:  VSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE

TrEMBL top hitse value%identityAlignment
A0A2N9FX66 Integrase catalytic domain-containing protein6.2e-0948.61Show/hide
Query:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE
        W+A +V+       G F P   +       DYVSKWVEA+AC  ND KTV +FL+ HI +RFGTPRA++SD+
Subjt:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE

A0A2N9GEK9 Reverse transcriptase8.1e-0947.22Show/hide
Query:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE
        W+A +V+       G F P   +       DYVSKWVEA+AC  ND +TV +FL+ HI +RFGTPRA++SD+
Subjt:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE

A0A2N9I071 Reverse transcriptase8.1e-0947.22Show/hide
Query:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE
        W+A +V+       G F P   +       DYVSKWVEA+AC  ND +TV +FL+ HI +RFGTPRA++SD+
Subjt:  WFASLVH-----LSGRFLPDCPF-------DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDE

A0A6J1DR08 uncharacterized protein LOC1110230212.1e-0954.39Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSR
        DYVSKWVEA+AC  +DAK V++FL  HIF RFGTPRAL+SDE +    +    + ++
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSR

A0A803R2M6 Uncharacterized protein3.6e-0945.83Show/hide
Query:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLRELSLSLRRLPPR
        DYVSKWVEA A   ND KTV RFLQ +IF RFGTPRA++SDE +    +    + SR      TA      S G +   EIS RE+ + L +   R
Subjt:  DYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLRELSLSLRRLPPR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAGTCAGCAAACAGAACGGTAGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTTGGGATAGAATTCGGGTCCCCTTCTTCAG
TGGCGAAGAGGGATATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGTGAAACCGAGGCGGCCAAAGGCGGTGGGGACCA
AACGGCATCGAACAGACTCGGCCCGAGCGAGCGGGCCGAGGGTCGGCCTCGGCCCAGGCCGAGCAGTGGGTCGGGTCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCC
ACTTGCTGGTTTGCCTCCTTGGTCCATCTTTCAGGCCGATTTCTCCCCGATTGTCCTTTTGACTACGTGTCCAAGTGGGTGGAAGCCATTGCATGTCATCAGAATGATGC
TAAGACGGTGTCAAGGTTTCTTCAATCGCACATTTTTGCGCGGTTTGGGACACCTAGGGCTCTTGTGAGCGATGAGGCCGCCGCTGTCTTCCCTCGTGCCGCCGTCCAGA
TCTGCAGCCGCCGCCGCTGCCCAGACTGTACTGCTGCCGCCGTCGACACGCCGAGCCGTGGGTCGTCTCTTCTTCGTGAGATATCCCTCCGCGAGCTCTCCCTCTCTCTG
CGTCGTCTTCCTCCGCGCATTCTCCCTCTCTCTGCAGATCTCTCTTCCTCTCGTGTTGCTGTGCAGCTCTTCCTCGTGAGTAGCGTCGCCGCCTTCCCCAATCAGAGCCG
CAACCTCTCACCCTCTCTGTTGGCGCGATTTCGGCTAAGGAAAGTTGTGGCTACTCGAGCTTCACTTTCGAGCATCCTCTCCTCTGTCCAGTGGCGTTTTGACTCCGTTC
TAGACCATTGCAGCATCGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAGTCAGCAAACAGAACGGTAGGGAGTGGAAAAGTAAGAGCAAGAGGAGAGAGTAGAGAATATAGAATAGTGTTTTGGGATAGAATTCGGGTCCCCTTCTTCAG
TGGCGAAGAGGGATATAAATACCTGCTCATCCTCCTAGGGTTTTTAGGGATTCGGAGGCGTTTTAGGTCAAACCAGGTGAAACCGAGGCGGCCAAAGGCGGTGGGGACCA
AACGGCATCGAACAGACTCGGCCCGAGCGAGCGGGCCGAGGGTCGGCCTCGGCCCAGGCCGAGCAGTGGGTCGGGTCAAAAACCCGACCCCTTCGGTCTTGGCCCGTCCC
ACTTGCTGGTTTGCCTCCTTGGTCCATCTTTCAGGCCGATTTCTCCCCGATTGTCCTTTTGACTACGTGTCCAAGTGGGTGGAAGCCATTGCATGTCATCAGAATGATGC
TAAGACGGTGTCAAGGTTTCTTCAATCGCACATTTTTGCGCGGTTTGGGACACCTAGGGCTCTTGTGAGCGATGAGGCCGCCGCTGTCTTCCCTCGTGCCGCCGTCCAGA
TCTGCAGCCGCCGCCGCTGCCCAGACTGTACTGCTGCCGCCGTCGACACGCCGAGCCGTGGGTCGTCTCTTCTTCGTGAGATATCCCTCCGCGAGCTCTCCCTCTCTCTG
CGTCGTCTTCCTCCGCGCATTCTCCCTCTCTCTGCAGATCTCTCTTCCTCTCGTGTTGCTGTGCAGCTCTTCCTCGTGAGTAGCGTCGCCGCCTTCCCCAATCAGAGCCG
CAACCTCTCACCCTCTCTGTTGGCGCGATTTCGGCTAAGGAAAGTTGTGGCTACTCGAGCTTCACTTTCGAGCATCCTCTCCTCTGTCCAGTGGCGTTTTGACTCCGTTC
TAGACCATTGCAGCATCGCCTAG
Protein sequenceShow/hide protein sequence
MLKSANRTVGSGKVRARGESREYRIVFWDRIRVPFFSGEEGYKYLLILLGFLGIRRRFRSNQVKPRRPKAVGTKRHRTDSARASGPRVGLGPGRAVGRVKNPTPSVLARP
TCWFASLVHLSGRFLPDCPFDYVSKWVEAIACHQNDAKTVSRFLQSHIFARFGTPRALVSDEAAAVFPRAAVQICSRRRCPDCTAAAVDTPSRGSSLLREISLRELSLSL
RRLPPRILPLSADLSSSRVAVQLFLVSSVAAFPNQSRNLSPSLLARFRLRKVVATRASLSSILSSVQWRFDSVLDHCSIA