; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041303 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041303
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr13:15284052..15287929
RNA-Seq ExpressionLag0041303
SyntenyLag0041303
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR021109 - Aspartic peptidase domain superfamily
IPR036397 - Ribonuclease H superfamily
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_012853648.1 PREDICTED: uncharacterized protein LOC105973174 [Erythranthe guttata]2.6e-17456.7Show/hide
Query:  EELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIRE
        EEL+SV L    +++ + +GT L  E   RLV FLR N D+FAW  ED+ GI P  +VH+L+V+   KPVKQ++R F  ERN+ +  +VD+LL AG IR 
Subjt:  EELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIRE

Query:  VHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAG
        V YP+WLSNVVLV K+ GKWR+C+DFT+LNKACPKD +PLP IDQLVD+T+G E+LSF+DAY GYNQI++   DQEK SFIT +G+YCYKVMPFGLKNAG
Subjt:  VHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAG

Query:  ATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRG-----------------IEAEPL
        ATYQR+VN MFA L+G+NMEVY+DDMLVKS K++ H  DL E F ILR+Y+MKLNPSKC+FGV  GKFLG+M+ QR                  +EAEPL
Subjt:  ATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRG-----------------IEAEPL

Query:  ATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTT
        A I E  V  F+WKN+VCRFGIP  +ISDNG QF  +    +C  L I    +S  +PQANGQ E  N+ I Q+LK +L   KGAW EELP VLWAYRTT
Subjt:  ATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTT

Query:  ARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNA
         RTSTGE+ F+L++G EAVVP E+G PS R   +S+Q ND A+R +LDL+DE RE A +R+  YK R+AR YN RVK R+F+ GDLVLR+V  +      
Subjt:  ARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNA

Query:  GALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY
        G L P WEGPY+V++VV  G Y L   +G   P  WN  +LK Y+
Subjt:  GALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY

XP_015384470.1 uncharacterized protein LOC107176464 [Citrus sinensis]1.6e-13930.93Show/hide
Query:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR
        PNS   G  EVP        + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI P +  H+LNV+   +PVKQ+
Subjt:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR

Query:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP
        RRAFN ER + +  +VD LL AGFIRE  YP W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS+PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EP
Subjt:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP

Query:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV
        DQ+KT+FIT+RGLYCYKVMPFGLKNAGATYQR+VN++F   +G+ MEVY+DDM+ KS+ +  H   L + F ILRK++M+LNP KCAFGVTSGKFLGFMV
Subjt:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV

Query:  HQRGI-----------------------------------------------------------------------------------------------
         QRGI                                                                                               
Subjt:  HQRGI-----------------------------------------------------------------------------------------------

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Query:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN
                                                                   EAEPLA+ITE+K TDFVW+N++CR+GIPN I+SDNG+QFDN
Subjt:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN

Query:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV
          FR FCS+LGIA+R +SPAHPQ+NGQVEA+NKIIK  LK +LE  KGAW +ELP VLWAYRTT   ST ET FSL+FG +AV+P E+GIPS RT  F  
Subjt:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV

Query:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW
          N   +  NLD ++E R  A+L+VA Y++R++  Y+ RV+ R+FK+GDLVLR+V QNTR P+ G+ G  WEGPY++ K V  G Y L+  +G    HPW
Subjt:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW

Query:  NAEHLKIYY
        NA  L+ YY
Subjt:  NAEHLKIYY

XP_021827212.1 uncharacterized protein LOC110767855 [Prunus avium]4.7e-13931.49Show/hide
Query:  PHVSDAAGLDPR-------GQPAEELESVPLTSE--ERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAF
        P  ++A+ LDPR        +P EELE + +  +  E+ + IGT++    R  LV FL AN D+FAW+HEDM GI+P ++ H+L+++   KPVKQ+RR++
Subjt:  PHVSDAAGLDPR-------GQPAEELESVPLTSE--ERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAF

Query:  NSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK
        ++ R E +  +VD+L K GFIREV+YP+WLSNVV+V+K  GKWRMC+DFTDLNKACPKDS+PLP IDQLVDATAGHE+LSFMDAYSGYNQI MH  DQE 
Subjt:  NSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK

Query:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRG
        TSFIT RG YCY+VMPFGLKNAGATYQR+VNRMF+  +GK+MEVYVDDMLVKS++++ H +DL   F ILR Y MKLNP+KCAFGV SGKFLGFMV  RG
Subjt:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRG

Query:  I---------------------------------------------------------------------------------------------------
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Query:  ----------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFC
                                                            EAEPLATIT  +V  FVWKN++CRFGIP++II+DNGRQFDNA F+ FC
Subjt:  ----------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFC

Query:  SDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAV
        S L I  R SSPAHPQANGQVEAVNKIIK+ +K KL   KG W E LP VLWAYR T R+STGET +SLSFG+EAVVP+EVG P+ R E F+ + +    
Subjt:  SDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAV

Query:  RLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKI
         L+LDLL+E R  + L +A Y+ R  R+YN +V+ R+F+ GDLVLRKV+  TRDP AG LG  WEGPY V+ + RPGTY L   NGK  PHPWNAEHL+ 
Subjt:  RLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKI

Query:  YY
        Y+
Subjt:  YY

XP_024035690.1 uncharacterized protein LOC112096473 [Citrus clementina]9.4e-14030.93Show/hide
Query:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR
        PNS   G  EVP        + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI P +  H+LNV+   +PVKQ+
Subjt:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR

Query:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP
        RRAFN ER + +  +VD LL AGFIRE  YP+W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS+PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EP
Subjt:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP

Query:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV
        DQ+KT+FIT+RGLYCYKVMPFGLKNAGATYQR+VN++F   +G+ MEVY+DDM+ KS+ +  H   L + F ILRK++M+LNP KCAFGVTSGKFLGFMV
Subjt:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV

Query:  HQRGI-----------------------------------------------------------------------------------------------
         QRGI                                                                                               
Subjt:  HQRGI-----------------------------------------------------------------------------------------------

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Query:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN
                                                                   EAEPLA+ITE+K TDFVW+N++CR+GIPN I+SDNG+QFDN
Subjt:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN

Query:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV
          FR FCS+LGIA+R +SPAHPQ+NGQVEA+NKIIK  LK +LE  KGAW +ELP VLWAYRTT   ST ET FSL+FG +AV+P E+GIPS RT  F  
Subjt:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV

Query:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW
          N   +  NLD ++E R  A+L+VA Y++R++  Y+ RV+ R+FK+GDLVLR+V QNTR P+ G+ G  WEGPY++ K V  G Y L+  +G    HPW
Subjt:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW

Query:  NAEHLKIYY
        NA  L+ YY
Subjt:  NAEHLKIYY

XP_024045974.1 uncharacterized protein LOC112100756 [Citrus clementina]1.2e-13930.93Show/hide
Query:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR
        PNS   G  EVP        + RG PAE+L SV + +++  + V +G+ L  + R +L+GFLR N D+FAWSH DMPGI P +  H+LNV+   +PVKQ+
Subjt:  PNSG--GCCEVPHVSDAAGLDPRGQPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQR

Query:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP
        RRAFN ER + +  +VD LL AGFIRE  YP W+SNVVLVKK+NGKWRMC+DFTDLNK+CPKDS+PLP +DQLVDATAGHEMLSFMDA+SGYNQI M+EP
Subjt:  RRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEP

Query:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV
        DQ+KT+FIT+RGLYCYKVMPFGLKNAGATYQR+VN++F   +G+ MEVY+DDM+ KS+ +  H   L + F ILRK++M+LNP KCAFGVTSGKFLGFMV
Subjt:  DQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV

Query:  HQRGI-----------------------------------------------------------------------------------------------
         QRGI                                                                                               
Subjt:  HQRGI-----------------------------------------------------------------------------------------------

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Query:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN
                                                                   EAEPLA+ITE+K TDFVW+N++CR+GIPN I+SDNG+QFDN
Subjt:  -----------------------------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDN

Query:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV
          FR FCS+LGIA+R +SPAHPQ+NGQVEA+NKIIK  LK +LE  KGAW +ELP VLWAYRTT   ST ET FSL+FG +AV+P E+GIPS RT  F  
Subjt:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV

Query:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW
          N   +  NLD ++E R  A+L+VA Y++R++  Y+ RV+ R+FK+GDLVLR+V QNTR P+ G+ G  WEGPY++ K V  G Y L+  +G    HPW
Subjt:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW

Query:  NAEHLKIYY
        NA  L+ YY
Subjt:  NAEHLKIYY

TrEMBL top hitse value%identityAlignment
A0A2N9ET33 Ribonuclease H8.6e-15535.2Show/hide
Query:  QPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P EELE + L  E+  +  +IGTK+    R  ++ FL+ N D+FAW+H+DMPGIDP  + H+LNV+   +P KQ+RR F  +RN+ ++ +V++LL AGF
Subjt:  QPAEELESVPLTSEE--RRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK
        IREV YP WL+NVV+VKKANGKWRMC+DFTDLNKACPKDS+PLP IDQLVD+TAGH +L+FMDA+SGYNQI M E DQEKTSFITS+GL+CY+VMPFGLK
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK

Query:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------
        NAGATYQR++N+MF   +G+NMEVYVDDMLVK+     H  DL E F+ LR+YRMKLNPSKC FGV+SGKFLGFMV QRGI                   
Subjt:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------

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Query:  ---------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLE
                       EAEPLATITEK +  FVWK I+CRFGIP   ISDNGRQFDN+ FR+FC +LGI +  SSP HPQANGQVE  N+ + + +KT+LE
Subjt:  ---------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLE

Query:  GLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRT
        G KG W EELP +LWAYRTTART TGET F L++G EAV+PVEVG+ + RT  +  + ND  +R NLDL+DE R+ A+ R   Y+ R+ARYY+ RVK R 
Subjt:  GLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRT

Query:  FKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYYQ
        FK GDLVLRKV   T+DP  G LGP WEGPY+V K  R GTY L   +G   PHPWNAEHLK YYQ
Subjt:  FKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYYQ

A0A2N9GGN7 Uncharacterized protein1.4e-16040.42Show/hide
Query:  QPAEELESVPLTS--EERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P+ EL++V L     ER   +G  L  E +  LV FL+ N D+FAWSHEDMPGI+P ++ H+LNV+   +P+KQ++R F  ERN+ +  +VD+LL A F
Subjt:  QPAEELESVPLTS--EERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK
        IREV+YP WL+NVV+VKK+ GKWRMC+DFTDLNKACPKDS+PLP IDQLVD+TAGH++L+FMDA+SGYNQI M E DQEKTSFITSRGL+CYKVMPFGLK
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK

Query:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGIEAEP---------------
        NAGATYQR++NRMF   +G+N+EVYVD+MLVKS +   H  DL E FQ LRKY+MKLNPSKCAFGV SGKFLGFMV QRGIEA P               
Subjt:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGIEAEP---------------

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Query:  ----------------------------------------------------------------LATITEK--KVTDFVWKNIVC---------------
                                                                        +A  T K  + T+ V + + C               
Subjt:  ----------------------------------------------------------------LATITEK--KVTDFVWKNIVC---------------

Query:  ----------------------------------------------------------------------------------RFGIPNTIISDNGRQFDN
                                                                                          +FGIP  ++SDNG+QFDN
Subjt:  ----------------------------------------------------------------------------------RFGIPNTIISDNGRQFDN

Query:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV
          FR+F  +LGI +  SSP HPQANGQVE  N+ + + +KT+LEG KG W EELP +LWAYRTT R  TGET F ++FG+EAV+PVE+G+ + RT  +  
Subjt:  AAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSV

Query:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW
        Q N+E +RLNLDL+DE RE A+ R+  Y+ ++AR+YN+RVK R    GDLVLRKV   TR+P+ G LGP WEGPY++ +V RPGTY L D NG+   HPW
Subjt:  QGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPW

Query:  NAEHLKIYY
        NAEHL+ YY
Subjt:  NAEHLKIYY

A0A2N9H0M9 Ribonuclease H7.5e-15937.81Show/hide
Query:  QPAEELESVPLTS--EERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P+ EL+++ L     ER   IG  L  + R  LV FL+ N D+FAWSHEDMPGI+P ++ H+LNV+   +PVKQ+RR F  ERN  +  +VD+LL A F
Subjt:  QPAEELESVPLTS--EERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK
        IREV YP WL+NVV+VKK+ GKWRMC+DFTDLNKACPKDS+PLP IDQ VD+TAGH++L+FMDA+SGYNQI + + DQEKTSFITSRGL+CYKVMPFGLK
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK

Query:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------
        NAGATYQR++NRMF   +G+N+EVYVDDMLVKS +   H  DL E F+ LRKY+MKLNPSKCAFGV SGKFLGFMV QRGI                   
Subjt:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAV
                                    EAEPLATITE+ + +FVWK +VCRFGIP  ++SDNG+QFDN  FR+F  +LGI +  SSP HPQANGQVE  
Subjt:  ----------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAV

Query:  NKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNR
        N+ + + +KT+LEG  G W EELP +LWAYRTT R  TGET F ++FG+EAVVPVE+G+ + RT  ++ + N+E +RLNL+L+DE RE A+ R+  Y+ +
Subjt:  NKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNR

Query:  VARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY
        +AR+YN++VK R    GDLVLRKV   TR+P+ G LGP WEGPY+V +V RPGTY L D +G+  PHPWNAEHL+ YY
Subjt:  VARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY

A0A2N9HHE1 Ribonuclease H1.4e-15735.42Show/hide
Query:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF
        +P E+LE + LT  +E+R+  IGT + AE RG +V FLR NAD+FAWSHEDMPGI   VMVH+LNVN    P+KQ+RR F  ERN  V ++VD+LL AGF
Subjt:  QPAEELESVPLT--SEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGF

Query:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK
        IREV+YP+WL+NVV+VKK NGKWRMC+DFTDLNKACPKDSYPLP IDQLVD+TAGH++LSFMDA+SGYNQIRM E DQEKT+FITSRGL+CYKVMPFGLK
Subjt:  IREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLK

Query:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------
        NAGATYQR+VN+MF   +G+N+EVYVDDMLVKS +++ H +DL E FQ LR Y MKLNP KCAFGV+SGKFLGFMV QRGI                   
Subjt:  NAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI-------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  -----------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSS
                                                 EAEPLATITEK V +FVWK ++CRFGIP  ++SDNGRQFDN  FR+ C+ L I +  SS
Subjt:  -----------------------------------------EAEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSS

Query:  PAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHR
        P HPQANGQVE  N+ + + +KT+LEG KG W EELP +LWAYRTT RT TGET F L+FG EAV+PVE+G+ + RT     + N+  +RLNLDLLDE R
Subjt:  PAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHR

Query:  EMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY
        + A  R+  Y+ ++A+YYN +VK R F+ GD VLRKV Q T+DP+ G LGP WEGPY+V +  R GTY L D +GK  PHPWNAEHLK YY
Subjt:  EMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYY

A0A2N9HY45 Uncharacterized protein2.0e-17247.9Show/hide
Query:  KLGAEQRGR----LVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN
        ++G +  GR    LV FLR N D+FAW+HEDMPGIDP V+ H+LNV+    P+KQ+RR F  +RN+ ++ +V +LL AGFI+EV+YP WL+NVV+VKK+N
Subjt:  KLGAEQRGR----LVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN

Query:  GKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGK
        GKWRMC+DFTDLNKACPKDS+PL  IDQLVD+TAGH++L+FMDA+SGYNQI M + DQEKTSFITS+GL+CY+VMPFGLKNAGATYQR++N+MF   + +
Subjt:  GKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGK

Query:  NMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGIEAEP-----------------------------------
        N+EVY+DDMLVK+     H  DL E F+ LR+YRMKLNPSKC FGV+SGKFLGFMV QRGIEA P                                   
Subjt:  NMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGIEAEP-----------------------------------

Query:  -----------------------------------------------------------------------------LATITEKKVTDFVWKNIVCRFGI
                                                                                     L TITEK +  FVWK I+CRFGI
Subjt:  -----------------------------------------------------------------------------LATITEKKVTDFVWKNIVCRFGI

Query:  PNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPV
        P   ISDNGRQF+N+ FR+FC +LGI +  SSP HPQANG+VE  N+ + + +KT+L+G KG W +EL  VLWAY TTART TGETLF L+FG EAV+PV
Subjt:  PNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETLFSLSFGAEAVVPV

Query:  EVG---------------------------IPSPRTE---------------QFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRT
        E+G                            PSP                  +  +  ND  +RLNLDLLDE  + A+++   Y+ R+A YY+ RVK + 
Subjt:  EVG---------------------------IPSPRTE---------------QFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRT

Query:  FKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYYQ
        FK GDLVLRKV   T+DP  G LGP WEGPY++ K  R GTY L   +    PHPWNA+HLK YYQ
Subjt:  FKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRPGTYALVDENGKPTPHPWNAEHLKIYYQ

SwissProt top hitse value%identityAlignment
P10394 Retrovirus-related Pol polyprotein from transposon 4122.7e-2829.76Show/hide
Query:  QPAEELESVPLTSEERRVNIGTKLGAE----QRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKA
        +P      V   SE R   + ++L        + +L        D+FA   E  P     +   QL + +D +PV  +       + E + +QV +L+K 
Subjt:  QPAEELESVPLTSEERRVNIGTKLGAE----QRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKA

Query:  GFIREVHYPQWLSNVVLVKKANG------KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCY
          + E    Q+ S ++LV K +       KWR+ ID+  +NK    D +PLP ID ++D     +  S +D  SG++QI + E  ++ TSF TS G Y +
Subjt:  GFIREVHYPQWLSNVVLVKKANG------KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCY

Query:  KVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI
          +PFGLK A  ++QRM+   F+ +      +Y+DD++V     +    +L E F   R+Y +KL+P KC+F +    FLG     +GI
Subjt:  KVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI

P10394 Retrovirus-related Pol polyprotein from transposon 4122.9e-0620.09Show/hide
Query:  AEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWA
        A P+A  + K V   ++++ + ++G   T I+D G ++ N+     C  L I +  S+  H Q  G VE  ++ + + +++ +   K  W   L   ++ 
Subjt:  AEPLATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWA

Query:  YRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTR
        + TT         + L FG  + +P            +++   D+  + +   L+     A+  +  +K +    Y+ +VK    + GD VL       R
Subjt:  YRTTARTSTGETLFSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTR

Query:  DPNAGALGPAWEGPYQVSKVVRPGTYALVDENGK
        +     L   + GPY++  +       L+    K
Subjt:  DPNAGALGPAWEGPYQVSKVVRPGTYALVDENGK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.4e-2933.62Show/hide
Query:  HQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN----GKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHE
        H LN   +  P+  ++          V +QV E+L  G IRE + P      V+ KK +     K+R+ ID+  LN+    D YP+P +D+++      +
Subjt:  HQLNVNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKAN----GKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHE

Query:  MLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKL
          + +D   G++QI M E    KT+F T  G Y Y  MPFGL+NA AT+QR +N +  PLL K+  VY+DD+++ S     H + +   F  L    +KL
Subjt:  MLSFMDAYSGYNQIRMHEPDQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKL

Query:  NPSKCAFGVTSGKFLGFMVHQRGIEAEPL
           KC F      FLG +V   GI+  P+
Subjt:  NPSKCAFGVTSGKFLGFMVHQRGIEAEPL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.3e-2736.73Show/hide
Query:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK
        +E+NE   ++ V +LL   FI     P   S VVLV K +G +R+C+D+  LNKA   D +PLP ID L+      ++ + +D +SGY+QI M   D+ K
Subjt:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK

Query:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV
        T+F+T  G Y Y VMPFGL NA +T+ R +   F  L  + + VY+DD+L+ S   + H   L+   + L+   + +   KC F     +FLG+ +
Subjt:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.3e-2736.76Show/hide
Query:  VASQVDELLKAGFIREVHYPQ----WLSNVVLVKKANG--KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKT
        V  Q+DELL+ G IR  + P     W+  V    K NG  ++RM +DF  LN     D+YP+P I+  + +    +  + +D  SG++QI M E D  KT
Subjt:  VASQVDELLKAGFIREVHYPQ----WLSNVVLVKKANG--KWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEKT

Query:  SFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI
        +F T  G Y +  +PFGLKNA A +QRM++ +    +GK   VY+DD++V S     H  +L      L K  +++N  K  F  T  +FLG++V   GI
Subjt:  SFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGI

Query:  EAEP
        +A+P
Subjt:  EAEP

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.3e-2736.73Show/hide
Query:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK
        +E+NE   ++ V +LL   FI     P   S VVLV K +G +R+C+D+  LNKA   D +PLP ID L+      ++ + +D +SGY+QI M   D+ K
Subjt:  SERNEVVASQ-VDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHEPDQEK

Query:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV
        T+F+T  G Y Y VMPFGL NA +T+ R +   F  L  + + VY+DD+L+ S   + H   L+   + L+   + +   KC F     +FLG+ +
Subjt:  TSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMV

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTCACCAAGAAGAAGAAGGAAAAATAGATGGAAATAGTGTACATCGCATCAACATGCAGTGTCGCCTTCAGCAGAAAGTGCCTAAGAAATTGGTTGATCCAGGGAG
TTTTTCTATTCCTTGTAATTTTGGTACTTACTCTTGTAGAGCATTATGTGATCTTGGTGCCAGCATAAATATTATTCCTTTGTCATTATGCAAGAAATTAAACATAGGAG
AAATAAAATCTATTTCTGATAGGCTCCAGTTGGCTGACCAGTCTGTGGTTAGTCCATATGGAATTGTGAAGAATGTTTTAATTAAATGGCCGGCCATCGGCAGCCGCCGG
TCGTCGGCAGCTGGCGGCCGACCGACCTTGAAGAAGAAGAATAAGAAGAAGGATGATGAGGTGATTTTGGACCATACAGATGGACAAGGAGCTGATGAGGACAATCGGGC
AGAGGCGGGACCAAAAGACCAACCCAGAGGAAGACTGGACCAACAGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTCGG
CCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTATTCGGTCCCTGATGCCCCGAATCGCCTCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTA
GGAGGGCAAACAGCTTCTCCTCGGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGTGGTTTTTGCTGGTCTTGCAGTTGGCGCCGTCT
GTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGTGGTGTTCTGTAGGATGAATCGGGTTCAGAAGCTAGAAGGACACCTCGGGTATGGGCAGGAAGCGTCGAATC
AGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACTCCGGAGGCTGTTATGAGCAGGAAGCGCCGAATCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGAC
CCTAGCTCCGGAGGCTGTTGCGAGCGGAAAGTGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACTCCGGAGGCTGTTGCGAGGTTCCGCATGT
CAGCGATGCTGCTGGACTTGACCCAAGGGGACAACCCGCGGAGGAACTGGAATCTGTACCACTAACGTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTG
AGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAATGCGGATCTGTTTGCATGGTCACACGAGGATATGCCGGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAAC
GTGAATAGGGATTTCAAGCCAGTAAAACAGAGGCGAAGAGCATTTAATTCGGAGAGGAACGAGGTTGTAGCCAGTCAAGTGGATGAGCTACTTAAAGCAGGGTTCATCCG
AGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTGGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACTTCACCGACCTGAATAAGGCGTGCCCAAAGG
ACAGTTATCCTTTGCCCATGATCGACCAGTTGGTTGACGCAACAGCAGGGCACGAGATGCTGAGTTTTATGGATGCATATTCAGGGTACAACCAGATTAGAATGCACGAG
CCCGATCAGGAAAAGACTTCATTCATCACCAGCCGAGGGTTGTATTGCTATAAGGTCATGCCGTTCGGTTTGAAGAACGCTGGGGCGACATACCAGCGAATGGTAAACCG
CATGTTTGCTCCGTTACTGGGAAAGAACATGGAGGTGTACGTGGATGATATGCTGGTAAAGAGCTTGAAGTCTCAATGCCATGAGTCTGACCTTAATGAAGCTTTCCAGA
TCCTCCGGAAGTATCGAATGAAACTAAACCCGAGTAAGTGCGCTTTTGGGGTGACATCAGGAAAATTCCTAGGATTCATGGTGCATCAGAGGGGGATAGAGGCAGAACCA
CTAGCAACTATAACCGAAAAGAAGGTCACTGACTTTGTATGGAAGAATATTGTGTGCCGTTTTGGGATCCCTAACACCATTATATCAGATAATGGTAGGCAGTTCGACAA
TGCCGCTTTCAGGAAGTTTTGCTCAGATTTGGGTATAGCACATCGTTGTTCATCCCCAGCCCATCCGCAAGCTAACGGCCAGGTGGAGGCTGTGAATAAAATAATCAAGC
AGAATCTTAAAACAAAGCTTGAAGGACTAAAAGGGGCATGGGCCGAAGAGCTCCCACGTGTACTGTGGGCGTATCGGACAACAGCACGAACCTCAACAGGAGAAACACTA
TTTTCCCTTTCATTCGGGGCAGAGGCGGTAGTCCCAGTGGAGGTCGGCATCCCCTCCCCCAGGACAGAACAGTTTAGTGTGCAAGGGAATGATGAAGCAGTGAGGTTGAA
CCTGGACCTCCTAGACGAGCATCGTGAAATGGCTCAACTCCGGGTCGCAGAGTATAAAAATAGGGTTGCCAGATATTATAACGCAAGAGTGAAAAGGCGCACCTTCAAAG
AAGGAGACCTAGTACTGAGGAAAGTTATGCAAAACACCAGAGATCCCAATGCAGGTGCGTTGGGACCAGCATGGGAAGGACCTTATCAAGTTAGCAAAGTGGTCCGCCCC
GGCACCTATGCCTTGGTTGATGAAAACGGGAAACCAACTCCACACCCATGGAATGCAGAACACTTGAAGATTTACTATCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACTCACCAAGAAGAAGAAGGAAAAATAGATGGAAATAGTGTACATCGCATCAACATGCAGTGTCGCCTTCAGCAGAAAGTGCCTAAGAAATTGGTTGATCCAGGGAG
TTTTTCTATTCCTTGTAATTTTGGTACTTACTCTTGTAGAGCATTATGTGATCTTGGTGCCAGCATAAATATTATTCCTTTGTCATTATGCAAGAAATTAAACATAGGAG
AAATAAAATCTATTTCTGATAGGCTCCAGTTGGCTGACCAGTCTGTGGTTAGTCCATATGGAATTGTGAAGAATGTTTTAATTAAATGGCCGGCCATCGGCAGCCGCCGG
TCGTCGGCAGCTGGCGGCCGACCGACCTTGAAGAAGAAGAATAAGAAGAAGGATGATGAGGTGATTTTGGACCATACAGATGGACAAGGAGCTGATGAGGACAATCGGGC
AGAGGCGGGACCAAAAGACCAACCCAGAGGAAGACTGGACCAACAGGTCGGGCCAAAATGGCCCGACCCATATGGTCGGCCTCGGCCTTTTGCCGAGGCCGACCATTCGG
CCCGTTTGCGCGGGCCGAGCCCGGTGACCTCTATTCGGTCCCTGATGCCCCGAATCGCCTCGGTTTCGCCTGGTTCGTCCCGAAACACCACCGAATTCCTAAAAACCCTA
GGAGGGCAAACAGCTTCTCCTCGGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGTGGTTTTTGCTGGTCTTGCAGTTGGCGCCGTCT
GTGGGGAAGAGTGCTTGCCAGTTCAGACCGCGCATCGGTGGTGTTCTGTAGGATGAATCGGGTTCAGAAGCTAGAAGGACACCTCGGGTATGGGCAGGAAGCGTCGAATC
AGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACTCCGGAGGCTGTTATGAGCAGGAAGCGCCGAATCAGACTGAGGTCGGCCTCGGTATGGAAAAGGCCGAC
CCTAGCTCCGGAGGCTGTTGCGAGCGGAAAGTGCCGAATCAGATTGAGGTCGGCCTCGGTATGGAAAAGGCCGACCCTAACTCCGGAGGCTGTTGCGAGGTTCCGCATGT
CAGCGATGCTGCTGGACTTGACCCAAGGGGACAACCCGCGGAGGAACTGGAATCTGTACCACTAACGTCTGAGGAAAGGAGAGTGAACATCGGCACCAAATTGGGGGCTG
AGCAGAGGGGCAGACTGGTTGGTTTCTTGAGGGCTAATGCGGATCTGTTTGCATGGTCACACGAGGATATGCCGGGAATTGACCCGGGAGTGATGGTTCACCAGTTGAAC
GTGAATAGGGATTTCAAGCCAGTAAAACAGAGGCGAAGAGCATTTAATTCGGAGAGGAACGAGGTTGTAGCCAGTCAAGTGGATGAGCTACTTAAAGCAGGGTTCATCCG
AGAAGTTCATTATCCCCAATGGTTGTCCAATGTGGTACTGGTAAAGAAGGCTAACGGGAAGTGGCGGATGTGCATCGACTTCACCGACCTGAATAAGGCGTGCCCAAAGG
ACAGTTATCCTTTGCCCATGATCGACCAGTTGGTTGACGCAACAGCAGGGCACGAGATGCTGAGTTTTATGGATGCATATTCAGGGTACAACCAGATTAGAATGCACGAG
CCCGATCAGGAAAAGACTTCATTCATCACCAGCCGAGGGTTGTATTGCTATAAGGTCATGCCGTTCGGTTTGAAGAACGCTGGGGCGACATACCAGCGAATGGTAAACCG
CATGTTTGCTCCGTTACTGGGAAAGAACATGGAGGTGTACGTGGATGATATGCTGGTAAAGAGCTTGAAGTCTCAATGCCATGAGTCTGACCTTAATGAAGCTTTCCAGA
TCCTCCGGAAGTATCGAATGAAACTAAACCCGAGTAAGTGCGCTTTTGGGGTGACATCAGGAAAATTCCTAGGATTCATGGTGCATCAGAGGGGGATAGAGGCAGAACCA
CTAGCAACTATAACCGAAAAGAAGGTCACTGACTTTGTATGGAAGAATATTGTGTGCCGTTTTGGGATCCCTAACACCATTATATCAGATAATGGTAGGCAGTTCGACAA
TGCCGCTTTCAGGAAGTTTTGCTCAGATTTGGGTATAGCACATCGTTGTTCATCCCCAGCCCATCCGCAAGCTAACGGCCAGGTGGAGGCTGTGAATAAAATAATCAAGC
AGAATCTTAAAACAAAGCTTGAAGGACTAAAAGGGGCATGGGCCGAAGAGCTCCCACGTGTACTGTGGGCGTATCGGACAACAGCACGAACCTCAACAGGAGAAACACTA
TTTTCCCTTTCATTCGGGGCAGAGGCGGTAGTCCCAGTGGAGGTCGGCATCCCCTCCCCCAGGACAGAACAGTTTAGTGTGCAAGGGAATGATGAAGCAGTGAGGTTGAA
CCTGGACCTCCTAGACGAGCATCGTGAAATGGCTCAACTCCGGGTCGCAGAGTATAAAAATAGGGTTGCCAGATATTATAACGCAAGAGTGAAAAGGCGCACCTTCAAAG
AAGGAGACCTAGTACTGAGGAAAGTTATGCAAAACACCAGAGATCCCAATGCAGGTGCGTTGGGACCAGCATGGGAAGGACCTTATCAAGTTAGCAAAGTGGTCCGCCCC
GGCACCTATGCCTTGGTTGATGAAAACGGGAAACCAACTCCACACCCATGGAATGCAGAACACTTGAAGATTTACTATCAGTAG
Protein sequenceShow/hide protein sequence
MTHQEEEGKIDGNSVHRINMQCRLQQKVPKKLVDPGSFSIPCNFGTYSCRALCDLGASINIIPLSLCKKLNIGEIKSISDRLQLADQSVVSPYGIVKNVLIKWPAIGSRR
SSAAGGRPTLKKKNKKKDDEVILDHTDGQGADEDNRAEAGPKDQPRGRLDQQVGPKWPDPYGRPRPFAEADHSARLRGPSPVTSIRSLMPRIASVSPGSSRNTTEFLKTL
GGQTASPRFSDLGIGGGVAYTTPVCSGFCWSCSWRRLWGRVLASSDRASVVFCRMNRVQKLEGHLGYGQEASNQTEVGLGMEKADPNSGGCYEQEAPNQTEVGLGMEKAD
PSSGGCCERKVPNQIEVGLGMEKADPNSGGCCEVPHVSDAAGLDPRGQPAEELESVPLTSEERRVNIGTKLGAEQRGRLVGFLRANADLFAWSHEDMPGIDPGVMVHQLN
VNRDFKPVKQRRRAFNSERNEVVASQVDELLKAGFIREVHYPQWLSNVVLVKKANGKWRMCIDFTDLNKACPKDSYPLPMIDQLVDATAGHEMLSFMDAYSGYNQIRMHE
PDQEKTSFITSRGLYCYKVMPFGLKNAGATYQRMVNRMFAPLLGKNMEVYVDDMLVKSLKSQCHESDLNEAFQILRKYRMKLNPSKCAFGVTSGKFLGFMVHQRGIEAEP
LATITEKKVTDFVWKNIVCRFGIPNTIISDNGRQFDNAAFRKFCSDLGIAHRCSSPAHPQANGQVEAVNKIIKQNLKTKLEGLKGAWAEELPRVLWAYRTTARTSTGETL
FSLSFGAEAVVPVEVGIPSPRTEQFSVQGNDEAVRLNLDLLDEHREMAQLRVAEYKNRVARYYNARVKRRTFKEGDLVLRKVMQNTRDPNAGALGPAWEGPYQVSKVVRP
GTYALVDENGKPTPHPWNAEHLKIYYQ