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Lag0041358 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041358
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:16428315..16428620
RNA-Seq ExpressionLag0041358
SyntenyLag0041358
Gene Ontology termsGO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0016021 - integral component of membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]1.1e-2556.67Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP
        GLGFRD+  FNQALLAKQCWR+++ P +L+A++ R RY+ +  FL+A +G NPS+ WRS+ WG+EL  KG RWRVGNGV I   ++ W+P
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP

XP_022145148.1 uncharacterized protein LOC111014662 [Momordica charantia]1.0e-3161.62Show/hide
Query:  QEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIP
        Q GLGF+D+ IFNQA+LAKQ W++IK P++LL +VLRG+Y+K GNF+ A LG+NPS+ WRSI+WG+ELF KG RWR+GNG  +   S+PWI +EGS +P
Subjt:  QEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIP

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]2.3e-2653.26Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE
        G+GFRD+ +FN+ALLAKQCWR++  P+++L++VL+GRY+K  +F++A +  NPSY WRSI+WGR+L KKG RWR+GNG  +    + W+P +
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE

XP_022155286.1 uncharacterized protein LOC111022423 [Momordica charantia]1.1e-3363.27Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI
        G+GFRDI IFNQA+LAKQ WR+++ P +LLAK LRG+Y+KTG+FL+A LG  PSY WRSI+WGR+LFKKG+RW+VGNG  I+ +S+PW+P++G+  P+
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI

XP_030502765.1 uncharacterized protein LOC115717936 [Cannabis sativa]6.0e-2759.14Show/hide
Query:  MQEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP
        +Q GLGFR+   FNQALLAKQ WR+I+FP++LL+K+LR RY+  GNF+ + LG+NPS TWRS+ WG+EL  KG RWRVG+G+ I+ A++ W+P
Subjt:  MQEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP

TrEMBL top hitse value%identityAlignment
A0A5E4FZN9 PREDICTED: retrotransposon5.4e-2656.67Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP
        GLGFRD+  FNQALLAKQCWR+++ P +L+A++ R RY+ +  FL+A +G NPS+ WRS+ WG+EL  KG RWRVGNGV I   ++ W+P
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIP

A0A6J1CV63 uncharacterized protein LOC1110146625.1e-3261.62Show/hide
Query:  QEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIP
        Q GLGF+D+ IFNQA+LAKQ W++IK P++LL +VLRG+Y+K GNF+ A LG+NPS+ WRSI+WG+ELF KG RWR+GNG  +   S+PWI +EGS +P
Subjt:  QEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIP

A0A6J1DAR4 uncharacterized protein LOC1110189541.1e-2653.26Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE
        G+GFRD+ +FN+ALLAKQCWR++  P+++L++VL+GRY+K  +F++A +  NPSY WRSI+WGR+L KKG RWR+GNG  +    + W+P +
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE

A0A6J1DRA0 uncharacterized protein LOC1110224235.4e-3463.27Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI
        G+GFRDI IFNQA+LAKQ WR+++ P +LLAK LRG+Y+KTG+FL+A LG  PSY WRSI+WGR+LFKKG+RW+VGNG  I+ +S+PW+P++G+  P+
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI

A0A803PXR5 Uncharacterized protein1.9e-2658.16Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI
        G+GFR+   FNQALLAKQ WRL+  P++LL+ +L+ RYY  G+ L A LGN PSYTWRSI+WG+EL KKG  WRVG G  I   S+PWIP   S +P+
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI

SwissProt top hitse value%identityAlignment
P93295 Uncharacterized mitochondrial protein AtMg003101.9e-2047.83Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE
        GLGFRD+G FNQALLAKQ +R+I  PH LL+++LR RY+   + ++ ++G  PSY WRSI+ GREL  +G    +G+G+      + WI  E
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE

Arabidopsis top hitse value%identityAlignment
AT4G29090.1 Ribonuclease H-like superfamily protein2.7e-1743.82Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWI
        G+GF+DI  FN ALL KQ WR++  P +L+AKV + RY+   + L A LG+ PS+ W+SI   +E+ ++G R  VGNG  I      W+
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWI

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein1.4e-2147.83Show/hide
Query:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE
        GLGFRD+G FNQALLAKQ +R+I  PH LL+++LR RY+   + ++ ++G  PSY WRSI+ GREL  +G    +G+G+      + WI  E
Subjt:  GLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCAAGAAGGTTTAGGGTTCCGGGACATTGGAATCTTTAACCAAGCTTTGCTTGCTAAACAGTGCTGGAGACTTATTAAATTCCCTCATAACTTGTTGGCCAAGGTGCT
CAGAGGAAGATACTACAAGACGGGGAACTTTCTCAAGGCCACACTAGGAAACAACCCTTCATATACTTGGAGAAGTATAATGTGGGGAAGAGAGCTTTTCAAGAAAGGGT
TCAGATGGCGAGTTGGTAATGGGGTTTTCATAGATGCAGCATCAGAGCCTTGGATTCCTAAGGAAGGGTCAGGTATCCCTATCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCAAGAAGGTTTAGGGTTCCGGGACATTGGAATCTTTAACCAAGCTTTGCTTGCTAAACAGTGCTGGAGACTTATTAAATTCCCTCATAACTTGTTGGCCAAGGTGCT
CAGAGGAAGATACTACAAGACGGGGAACTTTCTCAAGGCCACACTAGGAAACAACCCTTCATATACTTGGAGAAGTATAATGTGGGGAAGAGAGCTTTTCAAGAAAGGGT
TCAGATGGCGAGTTGGTAATGGGGTTTTCATAGATGCAGCATCAGAGCCTTGGATTCCTAAGGAAGGGTCAGGTATCCCTATCTAG
Protein sequenceShow/hide protein sequence
MQEGLGFRDIGIFNQALLAKQCWRLIKFPHNLLAKVLRGRYYKTGNFLKATLGNNPSYTWRSIMWGRELFKKGFRWRVGNGVFIDAASEPWIPKEGSGIPI