; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041363 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041363
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase domain-containing protein
Genome locationchr13:16574318..16575476
RNA-Seq ExpressionLag0041363
SyntenyLag0041363
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CCA66036.1 hypothetical protein [Beta vulgaris subsp. vulgaris]2.7e-1732.09Show/hide
Query:  WWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRC--------ESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAF
        WW++  +   +CW     GR+ W + ++ L A+ +VV R         E C +  P       +  W+ P V   KLN DA+V   +G   GG ++RDA 
Subjt:  WWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRC--------ESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAF

Query:  GAVFLAACLALPRCWSVD---LTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALA
        G V LA C      W+++   + E  +L  G+++A +  F N  +EMD  +L   L G+ +D +  G ++DD   L   C +       RH NKVAH LA
Subjt:  GAVFLAACLALPRCWSVD---LTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALA

Query:  CLTFSYSD-RVWLEE
         +  +  + RVWLEE
Subjt:  CLTFSYSD-RVWLEE

XP_021716820.1 uncharacterized protein LOC110684687 [Chenopodium quinoa]5.0e-1930.81Show/hide
Query:  WWSVSN-------LRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFG
        WW++         LR N+ W  E+  +DL    ++ +    D     ++  + + R    + +  W PP     K+N+DA++        GG ++RDA G
Subjt:  WWSVSN-------LRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFG

Query:  AVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTF
         V +A CL L   + VD+ E  AL   + +AL+  F   C+E D +++   L      A+ +G++++D  +L   C S    F  R GN  AHALA L+ 
Subjt:  AVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTF

Query:  SYSD-RVWLEE
        SY D RVW+EE
Subjt:  SYSD-RVWLEE

XP_021729829.1 uncharacterized protein LOC110696801 [Chenopodium quinoa]5.5e-1830.95Show/hide
Query:  VFW---WSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNL-QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA
        +FW   W V    N  C++G+      W  S E +R    +V   E+   +    P  P    +W PP+    K+N+DA+V    G   GG ++RD+ G 
Subjt:  VFW---WSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNL-QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA

Query:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFS
        V  + CL L R + VD+ E  A+   + + +   F N C+E D L+L   L   +T ++  G ++ D  +L   C      F  R GN+VAH LA L  S
Subjt:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFS

Query:  YSD-RVWLEE
        +++ RV++E+
Subjt:  YSD-RVWLEE

XP_021750224.1 uncharacterized protein LOC110715912 [Chenopodium quinoa]3.0e-1635.67Show/hide
Query:  PIRPIEQ--GAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHG
        P+ P +     W  P    +KLNTDA+   +     GG +LRDA G+V +A C  L   + VDL E  A+ + + +AL++ F NF +E D+++L   +  
Subjt:  PIRPIEQ--GAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHG

Query:  ELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYSD-RVWLEE
         +   ++ G ++ D  RL+  C S    F  R GN VAH LA L+ ++S+ R WLEE
Subjt:  ELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYSD-RVWLEE

XP_022150944.1 uncharacterized protein LOC111018973 [Momordica charantia]1.8e-2135.07Show/hide
Query:  VKVFWWSVSNLRNNMCWKGESDG--RDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA
        + V  W++ N RN         G   DL +WSE YL+ Y        S   +     RP     W PP     K+N DA+ R E   A  G I+RD+ G 
Subjt:  VKVFWWSVSNLRNNMCWKGESDG--RDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA

Query:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSD-KVLFTPRHGNKVAHALACLTF
        V+L A   L R   VD  EG+A+ +G+ LA++  F  F IE DSLR+  +L  +  D SEVG+L    +  L          FT R+GN  AH LA L  
Subjt:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSD-KVLFTPRHGNKVAHALACLTF

Query:  SYSD-RVWLEE
        +    ++W+EE
Subjt:  SYSD-RVWLEE

TrEMBL top hitse value%identityAlignment
A0A1S8ABJ9 Ribonuclease H-like superfamily protein (Fragment)3.6e-1533.96Show/hide
Query:  LQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRIL
        + P+P  P +   W PP    +KLNTDA++  E G    GCI+R+  GAV  A     P    V++ E  A+++G++LA +++ S   IE DS  +V  +
Subjt:  LQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRIL

Query:  HGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYS-DRVWLEE
           ++   EV  ++ + R L+      +  +TP   N VAHALA +  S S  RVW++E
Subjt:  HGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYS-DRVWLEE

A0A2P6SAP1 Putative RNA-directed DNA polymerase4.3e-1630.81Show/hide
Query:  VFWWSVSNLRNNMCWKGE-SDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQG----AWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFG
        V+ W + + RNN+ W G   +  +   W+ ++L  Y  V             P R  + G     W  P     K+N D S RPE G+   G ++RD  G
Subjt:  VFWWSVSNLRNNMCWKGE-SDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQG----AWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFG

Query:  AVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTF
        +   A     P   S    E  A   G+ LA+   +  F +E D   +V  L+  L D SEVG ++DD +  L    S K+    R  N VA+ LA L  
Subjt:  AVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTF

Query:  S-YSDRVWLEE
        S + + VWLEE
Subjt:  S-YSDRVWLEE

A0A5C7ITL2 RNase H domain-containing protein1.5e-1628.78Show/hide
Query:  WWSVSNLRNNMCWKGE-SDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAA
        WW V + RN      E     D+W W+  ++  +  V +  E+   L   P        W+PP V  FK+N+DA+ R   G +  GC++RD+ G V  + 
Subjt:  WWSVSNLRNNMCWKGE-SDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAA

Query:  CLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYSDR-
        C     C+   + E  A++ G  LA ++      +E D+L +V  +  +    SEVG+++ D   +        + F PR  NKV H LA L   +  R 
Subjt:  CLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYSDR-

Query:  VWLEE
        VW+ +
Subjt:  VWLEE

A0A6J1DBJ7 uncharacterized protein LOC1110189738.8e-2235.07Show/hide
Query:  VKVFWWSVSNLRNNMCWKGESDG--RDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA
        + V  W++ N RN         G   DL +WSE YL+ Y        S   +     RP     W PP     K+N DA+ R E   A  G I+RD+ G 
Subjt:  VKVFWWSVSNLRNNMCWKGESDG--RDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGA

Query:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSD-KVLFTPRHGNKVAHALACLTF
        V+L A   L R   VD  EG+A+ +G+ LA++  F  F IE DSLR+  +L  +  D SEVG+L    +  L          FT R+GN  AH LA L  
Subjt:  VFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSD-KVLFTPRHGNKVAHALACLTF

Query:  SYSD-RVWLEE
        +    ++W+EE
Subjt:  SYSD-RVWLEE

F4NCI4 Reverse transcriptase domain-containing protein1.3e-1732.09Show/hide
Query:  WWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRC--------ESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAF
        WW++  +   +CW     GR+ W + ++ L A+ +VV R         E C +  P       +  W+ P V   KLN DA+V   +G   GG ++RDA 
Subjt:  WWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRC--------ESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAF

Query:  GAVFLAACLALPRCWSVD---LTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALA
        G V LA C      W+++   + E  +L  G+++A +  F N  +EMD  +L   L G+ +D +  G ++DD   L   C +       RH NKVAH LA
Subjt:  GAVFLAACLALPRCWSVD---LTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALA

Query:  CLTFSYSD-RVWLEE
         +  +  + RVWLEE
Subjt:  CLTFSYSD-RVWLEE

SwissProt top hitse value%identityAlignment
P0C2F6 Putative ribonuclease H protein At1g657509.1e-0830Show/hide
Query:  QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILH
        QPR  R I    W  P V   K+NTD + R   G A  G +LRD  GA      L + RC S    E W +  G+  A +       +E+DS  +V  L 
Subjt:  QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILH

Query:  GELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYS
          ++D+  +  L+      L      +++   R  N++A  LA   FS S
Subjt:  GELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYS

Arabidopsis top hitse value%identityAlignment
AT2G34320.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein2.6e-1028.16Show/hide
Query:  LVKVFWWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRP-IEQG---AWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDA
        LV    W +   RN + +KG+         + E LR   +      +   L+ +   P +E+     W  P     K NTDA+ + E      G ILR+ 
Subjt:  LVKVFWWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRP-IEQG---AWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDA

Query:  FGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACL
         G V      ALPR  +V   E  AL   V    + ++     E D+  LV +L+ +      +   ++D ++LLH     K  FTPR GNKVA  +A  
Subjt:  FGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACL

Query:  TFSYSD
        + S+S+
Subjt:  TFSYSD

AT5G42905.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.7e-0632.23Show/hide
Query:  QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILH
        QPR  R I    W  P V   K+NTD + R   G A  G +LRD  GA      L + RC S    E W +  G+  A +       +E+DS  +V  L 
Subjt:  QPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLALPRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILH

Query:  GELTDASEVGLLMDDARRLLH
          ++D+  +  L+    RL H
Subjt:  GELTDASEVGLLMDDARRLLH


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTCCTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGTGAAAATGAGTATGATGGTGGAGAGGTTAGGGGCTTAGACGTGGATGCTGAAATTTCGTATAACAA
GTTCTTAGGTCGGGTGTATGAATTAAGTAGTATAAATCCGAATGAGAACGACATTGTATTGAGGTGTCTACTTCAACTGAGGTGTGTCTGTCTTCTTCTGACTCTGATCG
CTAACAGACTTGGTGGTACAGTTTATGGAGGCTATGTATTTCGATCGCTATATCATTTGGATTTTGTTGATGTCATATGGGCATTGAAGGAGAAGTTTGGTCTATTAGAC
TATGAACTTGTGAAAGTATTCTGGTGGTCAGTTTCGAATTTGCGGAACAATATGTGCTGGAAGGGTGAATCTGATGGTCGGGATTTGTGGGCATGGTCTGAGGAGTATCT
GAGGGCGTATCATGATGTTGTTAGCAGGTGTGAGTCTTGCTACAATTTGCAACCTCGCCCCATTCGGCCGATAGAGCAAGGTGCATGGACTCCCCCGGTGGTCGATGAGT
TTAAACTCAACACCGATGCTTCTGTCAGGCCTGAAATGGGTGAAGCGGAGGGAGGTTGTATTCTTCGTGATGCATTTGGTGCAGTGTTTCTGGCGGCGTGCTTGGCCCTA
CCTAGGTGCTGGAGCGTGGATCTTACTGAAGGTTGGGCATTGGTGAAGGGCGTGGAGTTAGCGTTACAGATGAGTTTCTCAAATTTCTGTATTGAAATGGATTCATTGAG
GCTGGTTCGAATTCTCCATGGGGAGTTGACTGATGCTTCAGAGGTCGGCCTGCTGATGGATGATGCCAGACGACTTCTCCATCCTTGTGTCAGTGACAAGGTTCTTTTTA
CACCACGACATGGGAACAAAGTGGCGCATGCTCTAGCTTGTTTGACCTTCTCTTATTCTGATCGTGTTTGGCTTGAAGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTCCTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGTGAAAATGAGTATGATGGTGGAGAGGTTAGGGGCTTAGACGTGGATGCTGAAATTTCGTATAACAA
GTTCTTAGGTCGGGTGTATGAATTAAGTAGTATAAATCCGAATGAGAACGACATTGTATTGAGGTGTCTACTTCAACTGAGGTGTGTCTGTCTTCTTCTGACTCTGATCG
CTAACAGACTTGGTGGTACAGTTTATGGAGGCTATGTATTTCGATCGCTATATCATTTGGATTTTGTTGATGTCATATGGGCATTGAAGGAGAAGTTTGGTCTATTAGAC
TATGAACTTGTGAAAGTATTCTGGTGGTCAGTTTCGAATTTGCGGAACAATATGTGCTGGAAGGGTGAATCTGATGGTCGGGATTTGTGGGCATGGTCTGAGGAGTATCT
GAGGGCGTATCATGATGTTGTTAGCAGGTGTGAGTCTTGCTACAATTTGCAACCTCGCCCCATTCGGCCGATAGAGCAAGGTGCATGGACTCCCCCGGTGGTCGATGAGT
TTAAACTCAACACCGATGCTTCTGTCAGGCCTGAAATGGGTGAAGCGGAGGGAGGTTGTATTCTTCGTGATGCATTTGGTGCAGTGTTTCTGGCGGCGTGCTTGGCCCTA
CCTAGGTGCTGGAGCGTGGATCTTACTGAAGGTTGGGCATTGGTGAAGGGCGTGGAGTTAGCGTTACAGATGAGTTTCTCAAATTTCTGTATTGAAATGGATTCATTGAG
GCTGGTTCGAATTCTCCATGGGGAGTTGACTGATGCTTCAGAGGTCGGCCTGCTGATGGATGATGCCAGACGACTTCTCCATCCTTGTGTCAGTGACAAGGTTCTTTTTA
CACCACGACATGGGAACAAAGTGGCGCATGCTCTAGCTTGTTTGACCTTCTCTTATTCTGATCGTGTTTGGCTTGAAGAGTGA
Protein sequenceShow/hide protein sequence
MPPVWVCFGGVWKESENEYDGGEVRGLDVDAEISYNKFLGRVYELSSINPNENDIVLRCLLQLRCVCLLLTLIANRLGGTVYGGYVFRSLYHLDFVDVIWALKEKFGLLD
YELVKVFWWSVSNLRNNMCWKGESDGRDLWAWSEEYLRAYHDVVSRCESCYNLQPRPIRPIEQGAWTPPVVDEFKLNTDASVRPEMGEAEGGCILRDAFGAVFLAACLAL
PRCWSVDLTEGWALVKGVELALQMSFSNFCIEMDSLRLVRILHGELTDASEVGLLMDDARRLLHPCVSDKVLFTPRHGNKVAHALACLTFSYSDRVWLEE