CuGenDBv2

Gene ID	Lag0041380
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr13:16898744..16899942
RNA-Seq Expression	Lag0041380
Synteny	Lag0041380
Gene Ontology terms	NA
InterPro domains	IPR026960 - Reverse transcriptase zinc-binding domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

VVA32947.1 PREDICTED: retrotransposon [Prunus dulcis]

5.2e-68

38.96

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Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        +GFRD+E FNQALLAKQCWRI++ P SL+AR+ + RY P   FL A+VG+ PSFIWRSL WG+ELL +GLRWRVG+G S+ VY+  WLP    F++ SP 
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   T V DL T+SGQWN  L++  F   E                        +G++SVKSGYRL   +   ++  PS   + +   +WK +W + IP
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK F WR   D LP    L  R      +C  C R  ES LH  W C+  K V     +G++    +  S  +L   ++    G    LF  + W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        N RN   F G  E    L+  +      F  A +      G QS        W PP AG YK+NVD + +      G+GVVVR++
Subjt:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]

1.2e-85

42.75

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        MGFRD+E+FN+ALLAKQCWRI+ +P+S+L+RVLKGRYF    F+ A +   PS+IWRS+LWGR+LL++GLRWR+G+G+SV +Y  NW+P     ++ S  
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMT-ASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQA-AWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   +RV+ L+    G W   ++R  F P E                        +G++SV+SGY++        Q PSSSS+E    WW G WKM IP
Subjt:  TLAPETRVADLMT-ASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQA-AWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK+F WRLCLDRLPT  NL  RG ++ N C  C R GE S+H+FW CKF +A+ +  +FG L       S F +LRE  + +    FE   VV+W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRGLEPMV-----GLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD
        N RN + F      V      LVEW   Y   F+ A S    G   V    ++ W PP+ G YK+N DASF      AGLG+++ +
Subjt:  NCRNQQRFRGLEPMV-----GLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD

XP_024037590.1 uncharacterized protein LOC112097210 [Citrus clementina]

1.8e-68

37.76

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        MGFRD+  FNQAL+AKQ WRI+Q PSSL+ARVLK RYF    F+ A +GS+PSF+WRS++WGR++L +G RWR+G+G++V VY  NW+P    F+  S  
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYES------------------------GLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK
        ++  +T VA+L+    QW E LI QHFRP ++                        G +SVKSGY++       + PS S+++  +  W+ +WK++IP K
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYES------------------------GLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK

Query:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLR---EVRDKVGGGRFELFVVVLWAV
        +KIF WR   D LPT +NL  +      +C  C    E+  H    C   + +         +  V    +  +L+       KV G        +LWA+
Subjt:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLR---EVRDKVGGGRFELFVVVLWAV

Query:  WNCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        W  RN+  F G  E  + +V      + SF++      V      A    +WSPP  GW KVNVDA+   E   AGLGVVVRDS
Subjt:  WNCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

XP_024038343.1 uncharacterized protein LOC112097373 [Citrus clementina]

4.4e-67

35.53

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Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        MGFRD   FNQAL+AKQ WRI+Q P SL+A++L+ RYF   DF+ A +GS PSFIWRS+LWGR+++ +G +WR+G+G+S+ ++  NWLP    F+  S  
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHF---------------RPY---------ESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK
        +L  +  VA+L+     WNEGLI +HF               RP          + G +SVKSGY++         P+SS+       W  +W +++P K
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHF---------------RPY---------ESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK

Query:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC
        I+IF WR   + LP+ +NL  R      +C  C +  E+  H    CK V+ +     F   + +     M  LL E++ +      EL V +LW +WN 
Subjt:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC

Query:  RNQQRFRGLEPMVGL-VEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD
        RN   F+G+  +  + V      + +F+R        +    + +   W PP+ G++KVNVDA+   E+  AGLG V+RD
Subjt:  RNQQRFRGLEPMVGL-VEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD

XP_024956542.1 uncharacterized protein LOC112498908 [Citrus sinensis]

1.2e-64

36.32

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Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        MGFRD   FNQALLAKQ WRI Q P SL+ARVL+ RYF   +FL A +GS PS+IWRS+LWGR+++  G RWR+G+G+ V ++  NW+P+   F+     
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK
        T+  E  V++L+     W+E LI +HF   +                        SG ++VKSGY+         +PSSS  ES    W  +W +++P K
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK

Query:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC
        I+IF WR   + LP+ +NL  R       C LC+   E+  H    CK  K V     F   I       +  LL  V+        +LF V+LWA WN 
Subjt:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC

Query:  RNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD
        RNQ  F+G  E    +V      + +++R   +  V     +    + W+PP+ G+ K+N DA+   E+  AGLG V+RD
Subjt:  RNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD

TrEMBL top hits

e value

%identity

Alignment

A0A1S8AC01 Ribonuclease H-like superfamily protein

4.0e-66

34.64

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        +GF+D   FNQAL+AKQ WR++Q+P SL ARVL+ +YF   DFL A +GS PSFIWRS++WGR+++  G RWR+G G+ V +Y  +W+P    FR  S  
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYES------------------------GLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK
        TL   + V+ L+    QW+E  I  HF   ++                        G +SVKSGY++        LPSSS N +    W+ +W + +P K
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYES------------------------GLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNK

Query:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC
        ++IF WR   + LP+ +NL  R      +C +C+   ES  H   +CK  + V    +F   +       +  LL+           EL V + W +W+ 
Subjt:  IKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNC

Query:  RNQQRF--RGLEPMVGLVEWVACYISSFQRAASACGVGL--QSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        RNQ  F  +  +P + L +     + +++R      + +  Q+ +A++D  WSPP AGW+K+NVDA+  R++  +GLGVV+R++
Subjt:  RNQQRF--RGLEPMVGLVEWVACYISSFQRAASACGVGL--QSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

A0A251NPF0 Reverse transcriptase domain-containing protein

4.9e-64

38.7

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        +GFRD+E FNQALLAKQCWRI++ P SL+AR+ + RY P   FL A+VG+ PSFIWRSL WG+ELL +GLRWRVGSG S+ VY+  WLP    F++ SP 
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   TRV DL T+SGQWN  L++  F   E                        +G++SVKSGYRL   +   ++  PS+  + +   +WK +W + IP
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK F WR   D LP    L  R      +C  C R  ES LH  W C+  K V     +G++    +  S  +L   ++    G    LF  + W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        N RN   F G  E  + L+  +      F  A +      G QS        W PP A    V    S R      G+GVVVR++
Subjt:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

A0A5E4FZN9 PREDICTED: retrotransposon

2.5e-68

38.96

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        +GFRD+E FNQALLAKQCWRI++ P SL+AR+ + RY P   FL A+VG+ PSFIWRSL WG+ELL +GLRWRVG+G S+ VY+  WLP    F++ SP 
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   T V DL T+SGQWN  L++  F   E                        +G++SVKSGYRL   +   ++  PS   + +   +WK +W + IP
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK F WR   D LP    L  R      +C  C R  ES LH  W C+  K V     +G++    +  S  +L   ++    G    LF  + W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        N RN   F G  E    L+  +      F  A +      G QS        W PP AG YK+NVD + +      G+GVVVR++
Subjt:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

A0A6J1DAR4 uncharacterized protein LOC111018954

6.0e-86

42.75

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        MGFRD+E+FN+ALLAKQCWRI+ +P+S+L+RVLKGRYF    F+ A +   PS+IWRS+LWGR+LL++GLRWR+G+G+SV +Y  NW+P     ++ S  
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMT-ASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQA-AWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   +RV+ L+    G W   ++R  F P E                        +G++SV+SGY++        Q PSSSS+E    WW G WKM IP
Subjt:  TLAPETRVADLMT-ASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLGQA-AWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK+F WRLCLDRLPT  NL  RG ++ N C  C R GE S+H+FW CKF +A+ +  +FG L       S F +LRE  + +    FE   VV+W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRGLEPMV-----GLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD
        N RN + F      V      LVEW   Y   F+ A S    G   V    ++ W PP+ G YK+N DASF      AGLG+++ +
Subjt:  NCRNQQRFRGLEPMV-----GLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRD

M5W5F3 Reverse transcriptase domain-containing protein (Fragment)

4.9e-64

38.7

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV
        +GFRD+E FNQALLAKQCWRI++ P SL+AR+ + RY P   FL A+VG+ PSFIWRSL WG+ELL +GLRWRVGSG S+ VY+  WLP    F++ SP 
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPV

Query:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP
         L   TRV DL T+SGQWN  L++  F   E                        +G++SVKSGYRL   +   ++  PS+  + +   +WK +W + IP
Subjt:  TLAPETRVADLMTASGQWNEGLIRQHFRPYE------------------------SGLFSVKSGYRLG--QAAWLAQLPSSSSNESGMGWWKGVWKMSIP

Query:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW
        NKIK F WR   D LP    L  R      +C  C R  ES LH  W C+  K V     +G++    +  S  +L   ++    G    LF  + W +W
Subjt:  NKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVW

Query:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS
        N RN   F G  E  + L+  +      F  A +      G QS        W PP A    V    S R      G+GVVVR++
Subjt:  NCRNQQRFRG-LEPMVGLVEWVACYISSFQRAASACGV--GLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVRDS

SwissProt top hits

e value

%identity

Alignment

P0C2F6 Putative ribonuclease H protein At1g65750

1.0e-21

24.58

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYF--PFGDFLRADVGSRPSFIWRSLLWG-RELLERGLRWRVGSGESVSVYSVNWL---------
        +G R  +  N+AL++K  WR++Q  +SL   VL+ +Y      D          S  WRS+  G R+++  G+ W  G G+ +  ++  W+         
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYF--PFGDFLRADVGSRPSFIWRSLLWG-RELLERGLRWRVGSGESVSVYSVNWL---------

Query:  ----PED---------------GNFRVRSPVT-----LAPETRVADLMTASGQWNEGLIRQHFRPYESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGW
            P D                +F    P T     L     V DL+T +        R  ++  + G FSV+S Y +     + ++P  +       +
Subjt:  ----PED---------------GNFRVRSPVT-----LAPETRVADLMTASGQWNEGLIRQHFRPYESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGW

Query:  WKGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCK-----FVKAVLMEPEFGSLIHNVQAGSMFDLLRE-VRDKV
        +  +WK+ +P ++K F W +    + T +    R     NVC +C+   ES LHV   C      +V+ V    + G       + S+F+ L + + D+ 
Subjt:  WKGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCK-----FVKAVLMEPEFGSLIHNVQAGSMFDLLRE-VRDKV

Query:  GGGRF---ELFVVVLWAVWNCRNQQRFRGLEPMVGLVEWVACYISSFQRAASA-CGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVR
        G        +F V++W  W  R    F         V++V  +     RA S    VG+   R    + W  P  GW KVN D + R     A  G V+R
Subjt:  GGGRF---ELFVVVLWAVWNCRNQQRFRGLEPMVGLVEWVACYISSFQRAASA-CGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVVVR

Query:  DSWVGLCCRHPWCSG
        D      C   WC G
Subjt:  DSWVGLCCRHPWCSG

P93295 Uncharacterized mitochondrial protein AtMg00310

1.4e-20

48.35

Show/hide

Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPED
        +GFRD+  FNQALLAKQ +RI+  P +LL+R+L+ RYFP    +   VG+RPS+ WRS++ GRELL RGL   +G G    V+   W+ ++
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPED

Arabidopsis top hits

e value

%identity

Alignment

AT1G43730.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

2.2e-08

27.67

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Query:  LLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPVTLAPETRVADLMTASG----QWNEGLI
        LLA  L   +    +F   +  +  S+IWR L   RE+    +   VGSG +   +  NW        +  P  L P+T V   + A G    Q ++  I
Subjt:  LLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPVTLAPETRVADLMTASG----QWNEGLI

Query:  RQHFRPYESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHC
         +      S +FS            LA  P +      + W+K VW  +   K     W +  +RL T D L   G  +  VC LC    ES  H+F+ C
Subjt:  RQHFRPYESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHC

Query:  KFVKAV
         F  AV
Subjt:  KFVKAV

AT2G02650.1 Ribonuclease H-like superfamily protein

1.4e-10

23.56

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Query:  KGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAG--SMFD-------LLREVRD
        + +WK+ +  KIK F WR     L T   L  R  D   +C  C    E+  H+ ++C + ++V       ++I   Q G  S F+        L + + 
Subjt:  KGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAG--SMFD-------LLREVRD

Query:  KVGGGRFELFVVVLWAVWNCRN----QQR-----FRGLEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQA
             RF  F  ++W +W  RN    QQ+     +   + +    EW+    ++           +Q+ R R+  +W+PP  GW K N D+ + +     
Subjt:  KVGGGRFELFVVVLWAVWNCRN----QQR-----FRGLEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQA

Query:  GLGVVVRD
          G  +R+
Subjt:  GLGVVVRD

AT4G29090.1 Ribonuclease H-like superfamily protein

6.8e-42

29.85

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Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWL---PEDGNFRV-
        +GF+D+E FN ALL KQ WR++  P SL+A+V K RYF   D L A +GSRPSF+W+S+   +E+L +G R  VG+GE + ++   WL   P     R+ 
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWL---PEDGNFRV-

Query:  RSP----VTLAPETRVADLMTASG-QWNEGLIRQHFRPYE------------------------SGLFSVKSGY-RLGQAAWLAQLPSSSSNESGMGWWK
        R P     +++   +V+DL+  SG +W + +I   F   E                        SG ++VKSGY  L Q       P   S  S    ++
Subjt:  RSP----VTLAPETRVADLMTASG-QWNEGLIRQHFRPYE------------------------SGLFSVKSGY-RLGQAAWLAQLPSSSSNESGMGWWK

Query:  GVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGG-----
         +WK     KI+ F W+   + LP    L  R     + C  C    E+  H+ + C F +           +    A S++  L  V +   G      
Subjt:  GVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVFWHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGG-----

Query:  RFELFVVVLWAVWNCRNQQRFRGLE---------PMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVV
          +L   +LW +W  RN+  FRG E             L EW        +  A +CG   Q V      RW PP   W K N DA++ R+  + G+G V
Subjt:  RFELFVVVLWAVWNCRNQQRFRGLE---------PMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAGWYKVNVDASFRRERWQAGLGVV

Query:  VRD-----SWVG
        +R+      W+G
Subjt:  VRD-----SWVG

ATMG00310.1 RNA-directed DNA polymerase (reverse transcriptase)-related family protein

1.0e-21

48.35

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Query:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPED
        +GFRD+  FNQALLAKQ +RI+  P +LL+R+L+ RYFP    +   VG+RPS+ WRS++ GRELL RGL   +G G    V+   W+ ++
Subjt:  MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPED

Sequences

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CDS sequence

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ATGGGTTTCAGGGACATGGAAATTTTTAACCAAGCTTTGCTGGCTAAACAGTGTTGGAGGATTGTCCAGAATCCTTCTTCCCTCCTGGCGCGTGTTCTGAAGGGCAGATA
TTTTCCTTTCGGCGATTTCTTGAGGGCGGATGTGGGATCGAGACCGTCCTTTATATGGAGGAGTCTGTTGTGGGGGAGAGAGTTGCTAGAGAGGGGCTTGCGTTGGCGGG
TTGGGAGTGGGGAAAGTGTGTCTGTATATAGTGTGAATTGGCTCCCTGAGGATGGTAATTTCAGGGTGCGATCACCAGTGACATTGGCGCCGGAGACTCGGGTTGCGGAT
CTGATGACGGCATCGGGGCAGTGGAACGAAGGGCTCATTCGGCAGCACTTTAGGCCTTATGAGTCAGGCCTGTTTTCGGTGAAAAGCGGATATCGGTTGGGTCAAGCAGC
CTGGCTTGCGCAACTTCCGTCTTCCTCTTCGAACGAGTCGGGAATGGGTTGGTGGAAGGGGGTTTGGAAAATGTCTATCCCGAATAAGATCAAAATTTTTCGTTGGAGAC
TTTGTTTAGACCGCTTGCCCACGATTGATAACTTGGGTATTCGGGGCTGTGACGTTTTAAATGTTTGTGGCCTATGTAGGCGAGCTGGGGAGTCTAGTCTGCATGTATTC
TGGCATTGCAAGTTCGTCAAGGCGGTGCTGATGGAGCCCGAGTTTGGAAGCTTGATACATAATGTGCAGGCTGGGTCTATGTTTGATCTCCTTAGGGAAGTGAGGGACAA
GGTTGGTGGGGGAAGATTTGAGTTGTTTGTGGTGGTGTTGTGGGCTGTGTGGAACTGTCGAAATCAGCAGAGATTTAGGGGCCTAGAACCAATGGTGGGACTAGTGGAAT
GGGTGGCGTGTTATATCTCGTCGTTCCAGCGGGCGGCCTCGGCTTGTGGAGTTGGGTTGCAGAGTGTCCGTGCACGGGAAGATGTTAGATGGAGCCCCCCGGAGGCTGGG
TGGTATAAGGTGAACGTTGATGCGTCCTTTAGGAGGGAGCGATGGCAGGCGGGTCTGGGTGTGGTGGTTCGAGATTCCTGGGTCGGGTTATGTTGTCGGCATCCTTGGTG
CAGCGGCATGTGTGAAGCCCAGAATGGCTGA

mRNA sequence

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Protein sequence

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MGFRDMEIFNQALLAKQCWRIVQNPSSLLARVLKGRYFPFGDFLRADVGSRPSFIWRSLLWGRELLERGLRWRVGSGESVSVYSVNWLPEDGNFRVRSPVTLAPETRVAD
LMTASGQWNEGLIRQHFRPYESGLFSVKSGYRLGQAAWLAQLPSSSSNESGMGWWKGVWKMSIPNKIKIFRWRLCLDRLPTIDNLGIRGCDVLNVCGLCRRAGESSLHVF
WHCKFVKAVLMEPEFGSLIHNVQAGSMFDLLREVRDKVGGGRFELFVVVLWAVWNCRNQQRFRGLEPMVGLVEWVACYISSFQRAASACGVGLQSVRAREDVRWSPPEAG
WYKVNVDASFRRERWQAGLGVVVRDSWVGLCCRHPWCSGMCEAQNG

Lag0041380 (gene) of Sponge gourd (AG-4) v1 genome