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Lag0041485 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041485
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Genome locationchr13:18784335..18784694
RNA-Seq ExpressionLag0041485
SyntenyLag0041485
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588985.1 Retrovirus-related Pol polyprotein from transposon RE1, partial [Cucurbita argyrosperma subsp. sororia]5.2e-0648.98Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQN-PPRNQNCNPNIGRGRGFPNKGRLSKGGRGRG---FSSPGQGCG
        +YNTFRTS+RT    V FEE+HVLL +EE+AL KQ KRD+     TALLA+SQ+        N N  RGRG   +GR    G G G   F + G+G G
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQN-PPRNQNCNPNIGRGRGFPNKGRLSKGGRGRG---FSSPGQGCG

KAG7015254.1 hypothetical protein SDJN02_22888, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-0648.98Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQN-PPRNQNCNPNIGRGRGFPNKGRLSKGGRGRG---FSSPGQGCG
        +YNTFRTS+RT    V FEE+HVLL +EE+AL KQ KRD+     TALLA+SQ+        N N  RGRG   +GR    G G G   F + G+G G
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQN-PPRNQNCNPNIGRGRGFPNKGRLSKGGRGRG---FSSPGQGCG

XP_022157455.1 uncharacterized protein LOC111024149 [Momordica charantia]4.0e-0645.45Show/hide
Query:  YNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRGFPNKGR-LSKGGRGRGFSS
        YN FRTS+RT  + V F+E+HVL+ SEE ALD+QVKRD+  + +TAL A           N N  RG+G    GR +   GR R +S+
Subjt:  YNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRGFPNKGR-LSKGGRGRGFSS

XP_022158378.1 uncharacterized protein LOC111024876 [Momordica charantia]1.4e-0644.57Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN--SQNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSPG
        ++NTFRTS+RT  + + F E+HVLL SE  A+DKQ K D+      AL+ N  S +  RNQN NPN         KGR S GG+ + F++ G
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN--SQNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSPG

XP_022159298.1 uncharacterized protein LOC111025709 [Momordica charantia]1.1e-0848.04Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRG--------FPNKGRLSK-------GGRGRG
        ++N F TS+ T  + V FEE++VLLV EEAA+DKQ K DE    S+ LLAN     + QN NPNI R RG        FPN    SK       GGR RG
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRG--------FPNKGRLSK-------GGRGRG

Query:  FS
        FS
Subjt:  FS

TrEMBL top hitse value%identityAlignment
A0A5D3D3T6 Retrotran_gag_3 domain-containing protein4.8e-0552.94Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN
        +YN FRTS++T  + V F E+H+LL SEE+AL+KQ KR++     TA+LAN
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN

A0A6J1D9L6 uncharacterized protein LOC1110188924.8e-0536.67Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANS-QNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSP---GQGCGML
        +YNT  TS+RT  + V FEE+HV + SEE+A++KQ+KR++ +    AL A+S Q+  R    +PN    R     GR    GRG+   +P    QG G  
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANS-QNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSP---GQGCGML

Query:  PLGNSIVKHSSDGSSQSVTC
          GN      +D  S    C
Subjt:  PLGNSIVKHSSDGSSQSVTC

A0A6J1DT57 uncharacterized protein LOC1110241491.9e-0645.45Show/hide
Query:  YNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRGFPNKGR-LSKGGRGRGFSS
        YN FRTS+RT  + V F+E+HVL+ SEE ALD+QVKRD+  + +TAL A           N N  RG+G    GR +   GR R +S+
Subjt:  YNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRGFPNKGR-LSKGGRGRGFSS

A0A6J1DVX4 uncharacterized protein LOC1110248766.7e-0744.57Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN--SQNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSPG
        ++NTFRTS+RT  + + F E+HVLL SE  A+DKQ K D+      AL+ N  S +  RNQN NPN         KGR S GG+ + F++ G
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLAN--SQNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSPG

A0A6J1DYF1 uncharacterized protein LOC1110257095.4e-0948.04Show/hide
Query:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRG--------FPNKGRLSK-------GGRGRG
        ++N F TS+ T  + V FEE++VLLV EEAA+DKQ K DE    S+ LLAN     + QN NPNI R RG        FPN    SK       GGR RG
Subjt:  DYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRG--------FPNKGRLSK-------GGRGRG

Query:  FS
        FS
Subjt:  FS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACTACAATACTTTTCGCACTTCCATTCGTACTCATGAAAAACAGGTCAAATTTGAGGAAGTTCATGTTCTTCTTGTCTCTGAAGAAGCTGCTCTAGATAAGCAAGT
CAAACGTGATGAAGCCATTGCATCTTCTACTGCTCTTCTTGCTAATTCTCAGAATCCGCCTCGCAATCAGAATTGTAATCCAAATATTGGTCGTGGCAGAGGTTTTCCTA
ATAAAGGTAGGTTGTCTAAAGGTGGTCGTGGCAGAGGTTTTTCTTCTCCAGGACAAGGTTGTGGTATGTTGCCTCTTGGAAACTCTATTGTTAAGCATTCCTCTGATGGT
TCCTCTCAGAGTGTTACTTGTCATATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACTACAATACTTTTCGCACTTCCATTCGTACTCATGAAAAACAGGTCAAATTTGAGGAAGTTCATGTTCTTCTTGTCTCTGAAGAAGCTGCTCTAGATAAGCAAGT
CAAACGTGATGAAGCCATTGCATCTTCTACTGCTCTTCTTGCTAATTCTCAGAATCCGCCTCGCAATCAGAATTGTAATCCAAATATTGGTCGTGGCAGAGGTTTTCCTA
ATAAAGGTAGGTTGTCTAAAGGTGGTCGTGGCAGAGGTTTTTCTTCTCCAGGACAAGGTTGTGGTATGTTGCCTCTTGGAAACTCTATTGTTAAGCATTCCTCTGATGGT
TCCTCTCAGAGTGTTACTTGTCATATCTGA
Protein sequenceShow/hide protein sequence
MDYNTFRTSIRTHEKQVKFEEVHVLLVSEEAALDKQVKRDEAIASSTALLANSQNPPRNQNCNPNIGRGRGFPNKGRLSKGGRGRGFSSPGQGCGMLPLGNSIVKHSSDG
SSQSVTCHI