; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041487 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041487
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:18815477..18820408
RNA-Seq ExpressionLag0041487
SyntenyLag0041487
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025725.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.7e-1962.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K++S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-1961.22Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC +ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.9e-1962.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]2.9e-1962.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

TYK00108.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.5e-1960.2Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EE+NQC  ST  R SAFKRLS+STSKK +PSTS FDR+K+ +DQ +R+M +L+ K F E N D K+ S + SRMKRK FV INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

TrEMBL top hitse value%identityAlignment
A0A5A7SMQ5 Retrotransposon gag protein8.2e-2062.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K++S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

A0A5A7SZJ7 Retrotransposon gag protein3.1e-1961.22Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC +ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M + + K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

A0A5A7TQ06 Retrotransposon gag protein1.4e-1962.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

A0A5D3BBF9 Gag protease polyprotein1.4e-1962.24Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EEENQC  ST  R SAFKRLS+STSKK +PSTS FDRLK+T+DQ +R+M +L+ K F E N D K+ S + SRMKRK  V INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

A0A5D3BLW3 Retrotransposon gag protein3.1e-1960.2Show/hide
Query:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF
        M   EE+NQC  ST  R SAFKRLS+STSKK +PSTS FDR+K+ +DQ +R+M +L+ K F E N D K+ S + SRMKRK FV INTEGSL V  RF
Subjt:  MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCTGTTCGACCTTCAGCTTTCAAAAGGTTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATC
TGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCA
TCCTGTCACGTATGAAGAGGAAGTTCTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCAC
GCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGCTTCGTTGCTACCTTCCT
CCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCCCTCACGAGCTTCGCTCGTTCCTTCTCCAAGTAAGAAGGCGCTTCTCTCCA
CTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTCCTTCTCTAAGTTCGAAGGCGCTTCTCTCCACT
GCTCCTTCTCTTAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCC
TCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTAGACGGCCTCGTTCCACTCCATCTTC
AAATGTTGGCAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGCGAGTCTGGGGAACACCCCTTCAAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGATG
AAGTCACTGCAAGTGAATCTGATGACGGCCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGAGTGCGTCACTGAAGGCGAATCTGGTGACTACCCCTGCAAGTTACT
CAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGACTGTAGGAAAATTTGGAGTGCATCACTGAAGGCGAATCTGGAGACTACCCCTGCAGCCAGAGGGA
GAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCTAGAGTCGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGC
CGATCCAAGAGATCAACAGGCCAACCGATCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGATCAAGAGGATCAATAA
GTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTTAACAGGCCGATCATCC
AAGAAGATCAACAAGCCAACAAATCGATCCAAGAGATCATCAAGCCAACAGGCCGATCATTCAAGAAGATCAACAAGCCAACAAGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCGACAGAAGAAGAAAATCAATGTTCGGTGTCCACCTCTGTTCGACCTTCAGCTTTCAAAAGGTTAAGTGTCTCCACATCGAAGAAAAGTCAACCTTCGACATC
TGTTTTTGATCGCCTCAAAGTAACAAGCGATCAACCTAAAAGAAAGATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAGCGACAAGAAGCTTCAAAGTAGCA
TCCTGTCACGTATGAAGAGGAAGTTCTTTGTTCTCATAAATACAGAAGGTTCCTTGAAGGTTCTTACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGATGGTTCTCAC
GCGCTTCGCTGCAGTTTCTTCTCCCTAAGTTCGAAGGTTCTCACGCGCTTCGCTGCACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGTGCTTCGTTGCTACCTTCCT
CCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGTTCATTCCTCCAAGTTCGAAGGTTCCCTCACGAGCTTCGCTCGTTCCTTCTCCAAGTAAGAAGGCGCTTCTCTCCA
CTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGCTGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTCCTTCTCTAAGTTCGAAGGCGCTTCTCTCCACT
GCTCCTTCTCTTAGTTCGAAGGCGCTTCTCTCCACTACTCCTTCTCCAAGTTTGAAGGCGCTTCTCTCTACTGCTCCTTCTCCAAGTTCGAAGGTGCTTCTCTCCACCCC
TCCTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTCCTTTTCAAATGTTTGGCGGCGGTAGACGGCCTCGTTCCACTCCATCTTC
AAATGTTGGCAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGCGAGTCTGGGGAACACCCCTTCAAGATACTACAGTCATCAAAGTGACTGGTCTAGACAGGTGATG
AAGTCACTGCAAGTGAATCTGATGACGGCCGTTGTAGGCGAGTCGAGTCTGGTGACCACCCCTGAGTGCGTCACTGAAGGCGAATCTGGTGACTACCCCTGCAAGTTACT
CAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATGACTGTAGGAAAATTTGGAGTGCATCACTGAAGGCGAATCTGGAGACTACCCCTGCAGCCAGAGGGA
GAGAACTCAGAGTCCAGAGCATTCTGCCAGAGTCTAGAGTCGGCAGGCCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGC
CGATCCAAGAGATCAACAGGCCAACCGATCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGATCAAGAGGATCAATAA
GTCAGCAGGCCGATCATCCAAAAGGATCAACAAGCTAACAAGTCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTTAACAGGCCGATCATCC
AAGAAGATCAACAAGCCAACAAATCGATCCAAGAGATCATCAAGCCAACAGGCCGATCATTCAAGAAGATCAACAAGCCAACAAGCTGA
Protein sequenceShow/hide protein sequence
MVATEEENQCSVSTSVRPSAFKRLSVSTSKKSQPSTSVFDRLKVTSDQPKRKMDNLEVKLFDEVNSDKKLQSSILSRMKRKFFVLINTEGSLKVLTRFAAVPSSKFDGSH
ALRCSFFSLSSKVLTRFAAQFLPPSSKVLMCFVATFLQVRRFSHALLQFIPPSSKVPSRASLVPSPSKKALLSTAPSPSSKALLSAAPSPSSKALLSVAPSLSSKALLST
APSLSSKALLSTTPSPSLKALLSTAPSPSSKVLLSTPPFEGSPLRFSFSKFEGSPLLLFKCLAAVDGLVPLHLQMLAVDGVRCASSSNASLGNTPSRYYSHQSDWSRQVM
KSLQVNLMTAVVGESSLVTTPECVTEGESGDYPCKLLRSPNKMGTGLAGVHDCRKIWSASLKANLETTPAARGRELRVQSILPESRVGRPIIQEDQQANKPIQQIIKPTG
RSKRSTGQPIDQEDQQVSRPIIQEDQQANRSIKRINKSAGRSSKRINKLTSRSNRSSSQQADPRDHQVNRPIIQEDQQANKSIQEIIKPTGRSFKKINKPTS