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Lag0041489 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041489
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionBEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein .
Genome locationchr13:18838570..18838887
RNA-Seq ExpressionLag0041489
SyntenyLag0041489
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_021753633.1 uncharacterized protein LOC110719026 [Chenopodium quinoa]6.7e-0533Show/hide
Query:  GLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR
        GLG VVRD  G +V  G+ QI   W ++I EA A+  G++    +       + +ESD L++I  L     DL+E+  I D IL +  S   + + +  R
Subjt:  GLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSR

XP_022143535.1 uncharacterized protein LOC111013412 [Momordica charantia]3.9e-0533.65Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH
        N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C      I +ESDSLE I++L    +D TE+ ++ ++I  M      +   
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH

Query:  HCSR
        H SR
Subjt:  HCSR

XP_022148737.1 uncharacterized protein LOC111017329 [Momordica charantia]1.3e-0532.67Show/hide
Query:  GGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCS
        GGLGW++R+    +   G   I     I  LE MA+  GI+ +V   +S+ +S+ IES+SLE I+++ G+ +++TE+ ++   I    + +   RF H  
Subjt:  GGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCS

Query:  R
        R
Subjt:  R

XP_022155262.1 uncharacterized protein LOC111022403 [Momordica charantia]2.7e-0632.69Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEI-SIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH
        +RGG+GW++R  DG +V  G   ++    +K+LEA A+ EG++ +    N   +  + IE+DS E+ ++L    EDLT+  ++ ++IL + DS   + F 
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEI-SIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH

Query:  HCSR
           R
Subjt:  HCSR

XP_022156777.1 uncharacterized protein LOC111023608 [Momordica charantia]6.7e-0532.41Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEIS----IEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPG
        N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C   +      I +ESDSLE I++L    +D TE+ ++ ++I  M +    
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEIS----IEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPG

Query:  MRFHHCSR
        +   H SR
Subjt:  MRFHHCSR

TrEMBL top hitse value%identityAlignment
A0A6J1CP26 uncharacterized protein LOC1110134121.9e-0533.65Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH
        N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C      I +ESDSLE I++L    +D TE+ ++ ++I  M      +   
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH

Query:  HCSR
        H SR
Subjt:  HCSR

A0A6J1D5W1 uncharacterized protein LOC1110173296.5e-0632.67Show/hide
Query:  GGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCS
        GGLGW++R+    +   G   I     I  LE MA+  GI+ +V   +S+ +S+ IES+SLE I+++ G+ +++TE+ ++   I    + +   RF H  
Subjt:  GGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCS

Query:  R
        R
Subjt:  R

A0A6J1DNV9 uncharacterized protein LOC1110224031.3e-0632.69Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEI-SIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH
        +RGG+GW++R  DG +V  G   ++    +K+LEA A+ EG++ +    N   +  + IE+DS E+ ++L    EDLT+  ++ ++IL + DS   + F 
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEI-SIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFH

Query:  HCSR
           R
Subjt:  HCSR

A0A6J1DSV1 uncharacterized protein LOC1110236083.2e-0532.41Show/hide
Query:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEIS----IEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPG
        N GG+GW++RD  G ++      I  +  I  LE MA+ EG++ I  + C   +      I +ESDSLE I++L    +D TE+ ++ ++I  M +    
Subjt:  NRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQI-VDSCNSNEIS----IEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPG

Query:  MRFHHCSR
        +   H SR
Subjt:  MRFHHCSR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G44470.1 BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G23320.1)3.2e-0535.71Show/hide
Query:  GLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVA
        GLGW++R+S G+ +  GM +   + P++  E  AL   I  +  S N   I IE + D+L II ++ G A
Subjt:  GLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGAGGAGGACTTGGATGGGTTGTTCGTGACTCAGACGGATCCATGGTCTGCTTCGGGATGCATCAAATTGACAAGAAATGGCCGATCAAAATTCTAGAAGCCAT
GGCTTTACGGGAAGGAATCAAGCAAATCGTGGATTCCTGCAACAGCAATGAGATCTCTATTGAAATTGAGTCCGATTCGCTGGAAATTATAAATATTCTTACCGGCGTTG
CAGAGGACCTCACGGAGGTGAAATTTATCACCGATCAGATTCTTGCTATGGCTGATTCTTCGCCTGGCATGCGCTTCCATCACTGTAGTAGATTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGAGGAGGACTTGGATGGGTTGTTCGTGACTCAGACGGATCCATGGTCTGCTTCGGGATGCATCAAATTGACAAGAAATGGCCGATCAAAATTCTAGAAGCCAT
GGCTTTACGGGAAGGAATCAAGCAAATCGTGGATTCCTGCAACAGCAATGAGATCTCTATTGAAATTGAGTCCGATTCGCTGGAAATTATAAATATTCTTACCGGCGTTG
CAGAGGACCTCACGGAGGTGAAATTTATCACCGATCAGATTCTTGCTATGGCTGATTCTTCGCCTGGCATGCGCTTCCATCACTGTAGTAGATTTTGA
Protein sequenceShow/hide protein sequence
MNRGGLGWVVRDSDGSMVCFGMHQIDKKWPIKILEAMALREGIKQIVDSCNSNEISIEIESDSLEIINILTGVAEDLTEVKFITDQILAMADSSPGMRFHHCSRF