; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041494 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041494
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionGag/pol protein
Genome locationchr13:18936696..18948374
RNA-Seq ExpressionLag0041494
SyntenyLag0041494
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0026081.1 pol protein [Cucumis melo var. makuwa]2.2e-1070.21Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN L+P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
KAA0047821.1 uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa]1.5e-0868.89Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSL+P  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
KAA0049822.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TYK05792.1 gag/pol protein [Cucumis melo var. makuwa]3.3e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS IP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
TYK08698.1 reverse transcriptase [Cucumis melo var. makuwa]9.4e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
TrEMBL top hitse value%identityAlignment
A0A5A7SPG1 Pol protein1.0e-1070.21Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        MRDCPLICTGESG   DSI L F GQDR+GSWE + TRWN L+P  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
A0A5A7U202 Reverse transcriptase4.5e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
A0A5A7U2P4 Integrase catalytic domain-containing protein7.5e-0968.89Show/hide
Query:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        DCPLI T ESG  ADS+ L FWGQDRV SWE + TRWNSL+P  R
Subjt:  DCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
A0A5D3C3J6 Gag/pol protein1.6e-1172.34Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
        +RDCPL CTGESG   DSI L FWGQDRVGSWE + TRWNS IP  R
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIR
A0A5D3CBX3 Reverse transcriptase4.5e-0678.79Show/hide
Query:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
        +RDCPLICTGESG  ADSI L FWGQDRVG W+
Subjt:  MRDCPLICTGESGLFADSISLPFWGQDRVGSWE
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGTTGTCAAAATCCCACCAGAAGCTCATAAACTCAAACCTGATCTCATAAAGCTTGTGTTTCAAGCTCCTTCCCTCTCAAATTCCATCACTAGAGGATCCCACAA
TCTATTCCAAAGGTCTGAGAATAGCAAGGAAGATCAAGTGGTGGTTCGTGACAAGTTGGGGAGGAAAAACAACCAACCAATTCGTTTAATTTTAAGATCAAAGAGTGAGA
CAGAAGTAGGATGCTGGTTGAATGAGAAGCTCGAGGTGGAGAGTGCCTTGGAGATAATGAAGAACTCACTTGAGAGCTCGCCAATGATTAATTGTAGGCGCTTGGTTATG
ATCGAGCTTGTTTACTACAAATGCAATATCGGGGCAAGTGCTCTAAATTTTGGTTCTAACCCTTGTAGCTTTGAGCTAATTCAGACACCTTTGAGTACATTCCAGAAATT
ACCTAGGCCTATTTGGTGGAGTTCAGCAGTTGCGGACTCGTTTGAGCCCCTTCGAATACCAATTAGCAAGGTTCTTGTTGTTTTGGATAACCTAGGCAACGTAGTCTCAA
TCCTAAGTGTGTTATGGACTCCTATCTACGAGGGATTGTCCTTTGATTTGTATGGCTGTAGGCTCGGTGTTGGGCTGCTTGGAGTCACCGGCGTTCTGCATCGCAGCAAA
TCGTGGATTCGTTCAAGTTCACCGGAGTTAATGGAGGTCATTTGGAGTTTAGAGAGAGAAAGTGGGTCTTATGAGAAATTAATGGAAGAAGAGGGGAGAATGTGGGTTGA
TGAGAGAGAAAATGGAGCTTTAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATATTGATACAAACGCAATGATCAAACGCGTTC
ATGTAGTTGACATGCGAGTGGGGGATGACCTAGGCAACTTGGCCTTAATCCTGAGTGGATATGGACTCTTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGT
GGCCTGTTCGCCGACTCAATAAGCCTACCTTTTTGGGGACAAGATCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCATTCCCGATATTAGGGTAAG
TAGAGCATTAAAAGGATTCGTTCTTGCTGCTGGAATTTTCGGATTCAACGTGATTTTGTTGGCAAACGATCGAGAACGACTTCTAAACGTCGGGACACTATTTCTCAGCG
TCTCGACGCTGTCACGATTTCGTGCGGCGCCAGATTTTCGTAGAGACGTGCGTGATGCCCTAAAATCGACGGTTCGGTTCGGTCGATTTGGGTTAGCTGGGGCCGGTTTG
GTCCGGTTTGACTCGGTTCGGTGCGGTTCAAGGTATTCAAGGCCGATTCGAAGCGGTTCGGGTCGGTTCGAGAACTCTAGACCGGATTTGAAGCTGCAGATTTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGTTGTCAAAATCCCACCAGAAGCTCATAAACTCAAACCTGATCTCATAAAGCTTGTGTTTCAAGCTCCTTCCCTCTCAAATTCCATCACTAGAGGATCCCACAA
TCTATTCCAAAGGTCTGAGAATAGCAAGGAAGATCAAGTGGTGGTTCGTGACAAGTTGGGGAGGAAAAACAACCAACCAATTCGTTTAATTTTAAGATCAAAGAGTGAGA
CAGAAGTAGGATGCTGGTTGAATGAGAAGCTCGAGGTGGAGAGTGCCTTGGAGATAATGAAGAACTCACTTGAGAGCTCGCCAATGATTAATTGTAGGCGCTTGGTTATG
ATCGAGCTTGTTTACTACAAATGCAATATCGGGGCAAGTGCTCTAAATTTTGGTTCTAACCCTTGTAGCTTTGAGCTAATTCAGACACCTTTGAGTACATTCCAGAAATT
ACCTAGGCCTATTTGGTGGAGTTCAGCAGTTGCGGACTCGTTTGAGCCCCTTCGAATACCAATTAGCAAGGTTCTTGTTGTTTTGGATAACCTAGGCAACGTAGTCTCAA
TCCTAAGTGTGTTATGGACTCCTATCTACGAGGGATTGTCCTTTGATTTGTATGGCTGTAGGCTCGGTGTTGGGCTGCTTGGAGTCACCGGCGTTCTGCATCGCAGCAAA
TCGTGGATTCGTTCAAGTTCACCGGAGTTAATGGAGGTCATTTGGAGTTTAGAGAGAGAAAGTGGGTCTTATGAGAAATTAATGGAAGAAGAGGGGAGAATGTGGGTTGA
TGAGAGAGAAAATGGAGCTTTAAGGGATAAGGCTGGGTACCTTATCCTGGTGACACTATGGATACGACCCGCTTTGTATATTGATACAAACGCAATGATCAAACGCGTTC
ATGTAGTTGACATGCGAGTGGGGGATGACCTAGGCAACTTGGCCTTAATCCTGAGTGGATATGGACTCTTGTCCATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGT
GGCCTGTTCGCCGACTCAATAAGCCTACCTTTTTGGGGACAAGATCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCATTCCCGATATTAGGGTAAG
TAGAGCATTAAAAGGATTCGTTCTTGCTGCTGGAATTTTCGGATTCAACGTGATTTTGTTGGCAAACGATCGAGAACGACTTCTAAACGTCGGGACACTATTTCTCAGCG
TCTCGACGCTGTCACGATTTCGTGCGGCGCCAGATTTTCGTAGAGACGTGCGTGATGCCCTAAAATCGACGGTTCGGTTCGGTCGATTTGGGTTAGCTGGGGCCGGTTTG
GTCCGGTTTGACTCGGTTCGGTGCGGTTCAAGGTATTCAAGGCCGATTCGAAGCGGTTCGGGTCGGTTCGAGAACTCTAGACCGGATTTGAAGCTGCAGATTTTGTAA
Protein sequenceShow/hide protein sequence
MFVVKIPPEAHKLKPDLIKLVFQAPSLSNSITRGSHNLFQRSENSKEDQVVVRDKLGRKNNQPIRLILRSKSETEVGCWLNEKLEVESALEIMKNSLESSPMINCRRLVM
IELVYYKCNIGASALNFGSNPCSFELIQTPLSTFQKLPRPIWWSSAVADSFEPLRIPISKVLVVLDNLGNVVSILSVLWTPIYEGLSFDLYGCRLGVGLLGVTGVLHRSK
SWIRSSSPELMEVIWSLERESGSYEKLMEEEGRMWVDERENGALRDKAGYLILVTLWIRPALYIDTNAMIKRVHVVDMRVGDDLGNLALILSGYGLLSMRDCPLICTGES
GLFADSISLPFWGQDRVGSWERSLTRWNSLIPDIRVSRALKGFVLAAGIFGFNVILLANDRERLLNVGTLFLSVSTLSRFRAAPDFRRDVRDALKSTVRFGRFGLAGAGL
VRFDSVRCGSRYSRPIRSGSGRFENSRPDLKLQIL