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Lag0041495 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041495
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionNuclear transcription factor Y subunit B
Genome locationchr13:18959104..18959454
RNA-Seq ExpressionLag0041495
SyntenyLag0041495
Gene Ontology termsGO:0045944 - positive regulation of transcription by RNA polymerase II (biological process)
GO:0016602 - CCAAT-binding factor complex (cellular component)
GO:0000978 - RNA polymerase II proximal promoter sequence-specific DNA binding (molecular function)
GO:0001228 - DNA-binding transcription activator activity, RNA polymerase II-specific (molecular function)
GO:0046982 - protein heterodimerization activity (molecular function)
InterPro domainsIPR003958 - Transcription factor CBF/NF-Y/archaeal histone domain
IPR009072 - Histone-fold
IPR027113 - Transcription factor NFYB/HAP3


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6590402.1 Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3278.35Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE

XP_022145916.1 nuclear transcription factor Y subunit B-4-like [Momordica charantia]4.6e-3165.55Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQ---LE
        MGDD  E+LQLP ANVGRLMKKI+PQT+KISK AKQTMQECATEFI FVTSEAA KC+ +NRRTLNG+DI+ AF ALGLDNYA A+A YLL YR    ++
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQ---LE

Query:  AHDNNEASRTQRRRRNEDE
         H+ +   + Q    N D+
Subjt:  AHDNNEASRTQRRRRNEDE

XP_022961414.1 nuclear transcription factor Y subunit B-4-like [Cucurbita moschata]1.9e-3278.35Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE

XP_022968852.1 nuclear transcription factor Y subunit B-4-like [Cucurbita maxima]4.6e-3168.07Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E   
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---

Query:  AHDNNEASRTQRRRRNEDE
        A      +R Q+    E E
Subjt:  AHDNNEASRTQRRRRNEDE

XP_023546470.1 nuclear transcription factor Y subunit B-4-like [Cucurbita pepo subsp. pepo]6.0e-3166.67Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E   
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---

Query:  -AHDNNEASRTQRRRRNEDE
             N A   QR  +++++
Subjt:  -AHDNNEASRTQRRRRNEDE

TrEMBL top hitse value%identityAlignment
A0A1S3BQ87 Beta-galactosidase2.7e-2974.73Show/hide
Query:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE
        E LQLPIANV R+MKKI+PQ  KISK AK+TMQECA EFI FVTSEAA KCH +NRRTLNGDDI+ AF +LGLDNYA+AS+M LLK+R+ E
Subjt:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE

A0A5D3CFV4 Beta-galactosidase 15-like2.7e-2974.73Show/hide
Query:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE
        E LQLPIANV R+MKKI+PQ  KISK AK+TMQECA EFI FVTSEAA KCH +NRRTLNGDDI+ AF +LGLDNYA+AS+M LLK+R+ E
Subjt:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE

A0A6J1CXT8 nuclear transcription factor Y subunit B-4-like2.2e-3165.55Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQ---LE
        MGDD  E+LQLP ANVGRLMKKI+PQT+KISK AKQTMQECATEFI FVTSEAA KC+ +NRRTLNG+DI+ AF ALGLDNYA A+A YLL YR    ++
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQ---LE

Query:  AHDNNEASRTQRRRRNEDE
         H+ +   + Q    N D+
Subjt:  AHDNNEASRTQRRRRNEDE

A0A6J1HDY6 nuclear transcription factor Y subunit B-4-like9.0e-3378.35Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE

A0A6J1HUN8 nuclear transcription factor Y subunit B-4-like2.2e-3168.07Show/hide
Query:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---
        MG++  +ELQLPIANVGRLMKKILPQ AKISK AK TMQECATEFI FVTSEAA KCH  NRRTLNGDDI  AF + GLDNYA+ASA YLLKYR +E   
Subjt:  MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLE---

Query:  AHDNNEASRTQRRRRNEDE
        A      +R Q+    E E
Subjt:  AHDNNEASRTQRRRRNEDE

SwissProt top hitse value%identityAlignment
O04027 Nuclear transcription factor Y subunit B-44.6e-2660Show/hide
Query:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEASR
        E+  LPIANVGRLMK+ILP  AKISK AKQT+QECATEFI FVT EA+ KCH +NR+T+NGDDI  A + LGLDNYA A   +L KYR+ E  +  E ++
Subjt:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEASR

Query:  TQRRRRNEDE
              NE E
Subjt:  TQRRRRNEDE

O23310 Nuclear transcription factor Y subunit B-36.9e-2249.02Show/hide
Query:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEA
        ++++  LPIANV R+MKK LP  AKISK AK+T+QEC +EFI F+T EA++KC  + R+T+NGDD+  A   LG ++Y +   +YL KYR++E      A
Subjt:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEA

Query:  SR
         R
Subjt:  SR

O82248 Nuclear transcription factor Y subunit B-51.9e-2458.16Show/hide
Query:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN
        K+++  LPIANVGR+MK ILP  AK+SK AK+TMQEC +EFI FVT EA++KCH + R+T+NGDDI  A A LG D+YA     YL +YR LE    N
Subjt:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN

Q54WV0 Nuclear transcription factor Y subunit beta1.1e-2450Show/hide
Query:  DKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNE
        D++++  LPIAN+ R+MKK LP  AK++K AK+T+Q+C +EFI F+TSEA++KC  + R+T+NG+DI +A  +LG +NY +   +YLLKYR+ E + NN+
Subjt:  DKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNE

Query:  AS
         S
Subjt:  AS

Q9SIT9 Nuclear transcription factor Y subunit B-71.1e-2248.21Show/hide
Query:  DDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN
        ++K+++  LPIANVGR+MKK+LP   KISK AK+T+QEC +EFI FVT EA++KC  + R+T+NGDDI  A   LG ++Y     +YL KYR  E    N
Subjt:  DDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN

Query:  EASRTQRRRRNE
           + Q+R++ +
Subjt:  EASRTQRRRRNE

Arabidopsis top hitse value%identityAlignment
AT1G09030.1 nuclear factor Y, subunit B43.3e-2760Show/hide
Query:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEASR
        E+  LPIANVGRLMK+ILP  AKISK AKQT+QECATEFI FVT EA+ KCH +NR+T+NGDDI  A + LGLDNYA A   +L KYR+ E  +  E ++
Subjt:  EELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEASR

Query:  TQRRRRNEDE
              NE E
Subjt:  TQRRRRNEDE

AT2G13570.1 nuclear factor Y, subunit B77.5e-2448.21Show/hide
Query:  DDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN
        ++K+++  LPIANVGR+MKK+LP   KISK AK+T+QEC +EFI FVT EA++KC  + R+T+NGDDI  A   LG ++Y     +YL KYR  E    N
Subjt:  DDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN

Query:  EASRTQRRRRNE
           + Q+R++ +
Subjt:  EASRTQRRRRNE

AT2G38880.2 nuclear factor Y, subunit B18.3e-2347.17Show/hide
Query:  GDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDN
        G  ++++  LPIAN+ R+MKK LP   KI K AK T+QEC +EFI F+TSEA++KC  + R+T+NGDD+  A A LG ++Y +   +YL +YR+LE  DN
Subjt:  GDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDN

Query:  NEASRT
          + ++
Subjt:  NEASRT

AT2G47810.1 nuclear factor Y, subunit B51.4e-2558.16Show/hide
Query:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN
        K+++  LPIANVGR+MK ILP  AK+SK AK+TMQEC +EFI FVT EA++KCH + R+T+NGDDI  A A LG D+YA     YL +YR LE    N
Subjt:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNN

AT4G14540.1 nuclear factor Y, subunit B34.9e-2349.02Show/hide
Query:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEA
        ++++  LPIANV R+MKK LP  AKISK AK+T+QEC +EFI F+T EA++KC  + R+T+NGDD+  A   LG ++Y +   +YL KYR++E      A
Subjt:  KKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEA

Query:  SR
         R
Subjt:  SR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGATGATAAGAAGGAAGAGCTTCAATTGCCGATTGCCAATGTGGGCAGATTAATGAAGAAGATACTTCCTCAAACGGCGAAGATTTCAAAGGCTGCGAAACAGAC
GATGCAAGAATGTGCGACAGAGTTCATTGGGTTCGTCACAAGTGAAGCTGCAAACAAATGTCACACACAGAATCGTAGGACTCTCAATGGAGACGACATTCATTCGGCTT
TTGCTGCTCTTGGCTTGGACAACTATGCACAGGCTTCTGCCATGTACTTGCTCAAGTACAGGCAACTCGAAGCTCACGACAACAACGAAGCTAGTCGAACTCAACGACGA
CGTCGAAATGAAGACGAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGATGATAAGAAGGAAGAGCTTCAATTGCCGATTGCCAATGTGGGCAGATTAATGAAGAAGATACTTCCTCAAACGGCGAAGATTTCAAAGGCTGCGAAACAGAC
GATGCAAGAATGTGCGACAGAGTTCATTGGGTTCGTCACAAGTGAAGCTGCAAACAAATGTCACACACAGAATCGTAGGACTCTCAATGGAGACGACATTCATTCGGCTT
TTGCTGCTCTTGGCTTGGACAACTATGCACAGGCTTCTGCCATGTACTTGCTCAAGTACAGGCAACTCGAAGCTCACGACAACAACGAAGCTAGTCGAACTCAACGACGA
CGTCGAAATGAAGACGAGTAA
Protein sequenceShow/hide protein sequence
MGDDKKEELQLPIANVGRLMKKILPQTAKISKAAKQTMQECATEFIGFVTSEAANKCHTQNRRTLNGDDIHSAFAALGLDNYAQASAMYLLKYRQLEAHDNNEASRTQRR
RRNEDE