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Lag0041512 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041512
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Genome locationchr13:19298169..19299680
RNA-Seq ExpressionLag0041512
SyntenyLag0041512
Gene Ontology termsGO:0009791 - post-embryonic development (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR003656 - Zinc finger, BED-type
IPR036236 - Zinc finger C2H2 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033275.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]4.1e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

KAA0047428.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]3.2e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

KAA0057700.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa]4.1e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

XP_038888298.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X1 [Benincasa hispida]1.7e-2463.74Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPK-EAIDNSESKL
        +PTK+R+N  +S+VW+HFE +KG DPN+ YA+CKYCGA YAC SK NGT ++K+HLESCKKYPYQR +D  QK L FKPK EA+ +S S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPK-EAIDNSESKL

XP_038888299.1 zinc finger BED domain-containing protein RICESLEEPER 2-like isoform X2 [Benincasa hispida]1.7e-2463.74Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPK-EAIDNSESKL
        +PTK+R+N  +S+VW+HFE +KG DPN+ YA+CKYCGA YAC SK NGT ++K+HLESCKKYPYQR +D  QK L FKPK EA+ +S S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPK-EAIDNSESKL

TrEMBL top hitse value%identityAlignment
A0A5A7THT5 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.0e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

A0A5A7TWZ3 Zinc finger BED domain-containing protein RICESLEEPER 3-like1.5e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

A0A5A7URG0 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.0e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

A0A5D3CEC4 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.0e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

A0A5D3CR68 Zinc finger BED domain-containing protein RICESLEEPER 3-like2.0e-2361.11Show/hide
Query:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL
        +P K RKN K S+VWDHFE +KG DPND  AKCKYCG  YAC SK NGT ++KHHLE+CKKYPYQ+ +D  Q  L FKPK+ + ++ S+L
Subjt:  SPTKKRKNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAGGGGTGTTCATCTTCAGACCAAAAACTGACACGACTGATCGAACCGATGGTGGTCGGTCGGTGTCGGTTCTAAGATTTTGGAAAACTGACCGGTCGATCGGTCG
GTTCGCCGTAGTAGCTAGCAACCAGCAACTCCCAATTCTCGTTGTCGCCGGTTCGCCCTTCGCCTGTTCGCTGTCTCACCTCGCCTTCGCCGTCGACTTCGAGAGTTCAA
CATTCCCAAGCAGCAACTCCCAGTTCTCGCCATCGACTTCGAGACTTCGAGACTTCAAGGATTCCCCAGCAGCAGCAGCAACACCCCTACAGCAGCAGCTTCGTTCATCT
CCTTTGTCGAGCGTGAGACTTCATCTCGTTCGCCAAGACTCAATAGTTCAAGAGTTCAGTTCACGACTCATGCCGTCTCTCCGTTCATCTCATTCGTCGAGAGTTCGAGG
TTCCGTTCATCTCCCTTGTCGTCTCTGTTCTCCCTCTCAATCGTTTTTCAGCAACATCGTCGTCGGCACACCGTCTTTCTCTAGTCACAGGCTAGACACCTCAGAAGAAG
TCAACATGGATAGTATCCCAGAAGAAAGTTCAGTCCATGTTGTGGATGTGGAGAAATCAAGTGGAGATAAGAAAAGTAAAGTGGGTCATTCGAGTCCAACCAAAAAGCGT
AAGAATACTAAAATCTCTGTTGTTTGGGATCATTTTGAGGAAATTAAAGGTTGTGATCCTAATGATTCCTATGCTAAGTGTAAATACTGTGGGGCTAAGTATGCATGTCA
ATCCAAGTGTAATGGTACCGATAGTTTGAAACACCATTTAGAAAGCTGTAAGAAATACCCTTATCAAAGAATGAAAGATCCAAGACAAAAACAACTGGTTTTCAAGCCTA
AAGAAGCGATTGATAATTCTGAATCAAAACTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTAGGGGTGTTCATCTTCAGACCAAAAACTGACACGACTGATCGAACCGATGGTGGTCGGTCGGTGTCGGTTCTAAGATTTTGGAAAACTGACCGGTCGATCGGTCG
GTTCGCCGTAGTAGCTAGCAACCAGCAACTCCCAATTCTCGTTGTCGCCGGTTCGCCCTTCGCCTGTTCGCTGTCTCACCTCGCCTTCGCCGTCGACTTCGAGAGTTCAA
CATTCCCAAGCAGCAACTCCCAGTTCTCGCCATCGACTTCGAGACTTCGAGACTTCAAGGATTCCCCAGCAGCAGCAGCAACACCCCTACAGCAGCAGCTTCGTTCATCT
CCTTTGTCGAGCGTGAGACTTCATCTCGTTCGCCAAGACTCAATAGTTCAAGAGTTCAGTTCACGACTCATGCCGTCTCTCCGTTCATCTCATTCGTCGAGAGTTCGAGG
TTCCGTTCATCTCCCTTGTCGTCTCTGTTCTCCCTCTCAATCGTTTTTCAGCAACATCGTCGTCGGCACACCGTCTTTCTCTAGTCACAGGCTAGACACCTCAGAAGAAG
TCAACATGGATAGTATCCCAGAAGAAAGTTCAGTCCATGTTGTGGATGTGGAGAAATCAAGTGGAGATAAGAAAAGTAAAGTGGGTCATTCGAGTCCAACCAAAAAGCGT
AAGAATACTAAAATCTCTGTTGTTTGGGATCATTTTGAGGAAATTAAAGGTTGTGATCCTAATGATTCCTATGCTAAGTGTAAATACTGTGGGGCTAAGTATGCATGTCA
ATCCAAGTGTAATGGTACCGATAGTTTGAAACACCATTTAGAAAGCTGTAAGAAATACCCTTATCAAAGAATGAAAGATCCAAGACAAAAACAACTGGTTTTCAAGCCTA
AAGAAGCGATTGATAATTCTGAATCAAAACTTTAG
Protein sequenceShow/hide protein sequence
MLGVFIFRPKTDTTDRTDGGRSVSVLRFWKTDRSIGRFAVVASNQQLPILVVAGSPFACSLSHLAFAVDFESSTFPSSNSQFSPSTSRLRDFKDSPAAAATPLQQQLRSS
PLSSVRLHLVRQDSIVQEFSSRLMPSLRSSHSSRVRGSVHLPCRLCSPSQSFFSNIVVGTPSFSSHRLDTSEEVNMDSIPEESSVHVVDVEKSSGDKKSKVGHSSPTKKR
KNTKISVVWDHFEEIKGCDPNDSYAKCKYCGAKYACQSKCNGTDSLKHHLESCKKYPYQRMKDPRQKQLVFKPKEAIDNSESKL