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Lag0041519 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041519
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr13:19521451..19521959
RNA-Seq ExpressionLag0041519
SyntenyLag0041519
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7990634.1 hypothetical protein I3843_02G035100 [Carya illinoinensis]6.4e-0952.94Show/hide
Query:  SREVIPFDPEIERTILRLRRENREIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELK
        SR++IP DPEIERT+  LRR   +I+ MA+++    PR ++DY +PV  G  S I+  PINANNFELK
Subjt:  SREVIPFDPEIERTILRLRRENREIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELK

WP_217833153.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]2.1e-0745.83Show/hide
Query:  RSSREVIPFDPEIERTILRLRRENREIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTG
        R +  ++P DPEI+RT    RR  R ++    +   E P+ IRDYFQP     Q GI+  PIN NNFELK G
Subjt:  RSSREVIPFDPEIERTILRLRRENREIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTG

XP_021279280.1 LOW QUALITY PROTEIN: uncharacterized protein LOC110412945 [Herrania umbratica]6.7e-0641.38Show/hide
Query:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY
        R++  ++PFDP+IERT  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K  Y
Subjt:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY

XP_021279860.1 uncharacterized protein LOC110413413 [Herrania umbratica]8.7e-0641.38Show/hide
Query:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY
        R++  ++PFDP+IERT  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K  Y
Subjt:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY

XP_038906874.1 uncharacterized protein LOC120092758 [Benincasa hispida]1.1e-0547.83Show/hide
Query:  EVIPFDPEIERTILRLRRENR-EIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTG
        E++ +DPE ER + R+ R+ R E   + D+   E  R IRDYF+PV    Q GI   PINA+NFELK G
Subjt:  EVIPFDPEIERTILRLRRENR-EIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTG

TrEMBL top hitse value%identityAlignment
A0A6J0ZX64 LOW QUALITY PROTEIN: uncharacterized protein LOC1104129453.2e-0641.38Show/hide
Query:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY
        R++  ++PFDP+IERT  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K  Y
Subjt:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY

A0A6J0ZYV0 uncharacterized protein LOC1104134134.2e-0641.38Show/hide
Query:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY
        R++  ++PFDP+IERT  R RREN ++      MA+ N           PE  R +RDY  P+ QG    I    INANNFE+K  Y
Subjt:  RSSREVIPFDPEIERTILRLRRENREII----QMADKN----------PPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGY

A0A6P8CDK6 Reverse transcriptase2.7e-0547.56Show/hide
Query:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK
        MR SR  E++P DPEIERT+ RLRRENR     ++++MAD +   +     R +RDY  P   G  S I    I ANNFELK
Subjt:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK

A0A6P8CTC3 uncharacterized protein LOC1161938992.7e-0547.56Show/hide
Query:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK
        MR SR  E++P DPEIERT+ RLRRENR     ++++MAD +   +     R +RDY  P   G  S I    I ANNFELK
Subjt:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK

A0A6P8DAI3 uncharacterized protein LOC1162029732.7e-0547.56Show/hide
Query:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK
        MR SR  E++P DPEIERT+ RLRRENR     ++++MAD +   +     R +RDY  P   G  S I    I ANNFELK
Subjt:  MRSSR--EVIPFDPEIERTILRLRRENR-----EIIQMADKNPPEE----PRPIRDYFQPVFQGQQSGIVYAPINANNFELK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGTAGTAGTAGAGAAGTGATACCATTTGATCCCGAGATAGAAAGAACAATTCTTAGGCTTCGAAGGGAAAATAGAGAAATTATTCAAATGGCAGATAAAAATCCACC
TGAGGAGCCTAGGCCTATTAGAGATTATTTTCAGCCTGTGTTTCAGGGACAGCAATCGGGAATTGTCTATGCACCGATTAATGCCAACAACTTTGAGCTGAAAACCGGAT
ATAGCATGAGATTGGTTGCAGTCTATTACTCCTGGGAGTATCACCGTCTCTCTCCTCCTCACCGTCTCTCTCCTCCGCAAGGTCAAGCGCTCCAACCTTTGTTGCACTCC
GACGCCGCCGCAGTAGCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGTAGTAGTAGAGAAGTGATACCATTTGATCCCGAGATAGAAAGAACAATTCTTAGGCTTCGAAGGGAAAATAGAGAAATTATTCAAATGGCAGATAAAAATCCACC
TGAGGAGCCTAGGCCTATTAGAGATTATTTTCAGCCTGTGTTTCAGGGACAGCAATCGGGAATTGTCTATGCACCGATTAATGCCAACAACTTTGAGCTGAAAACCGGAT
ATAGCATGAGATTGGTTGCAGTCTATTACTCCTGGGAGTATCACCGTCTCTCTCCTCCTCACCGTCTCTCTCCTCCGCAAGGTCAAGCGCTCCAACCTTTGTTGCACTCC
GACGCCGCCGCAGTAGCCTAG
Protein sequenceShow/hide protein sequence
MRSSREVIPFDPEIERTILRLRRENREIIQMADKNPPEEPRPIRDYFQPVFQGQQSGIVYAPINANNFELKTGYSMRLVAVYYSWEYHRLSPPHRLSPPQGQALQPLLHS
DAAAVA