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Lag0041532 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041532
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionCCHC-type domain-containing protein
Genome locationchr13:19756986..19757903
RNA-Seq ExpressionLag0041532
SyntenyLag0041532
Gene Ontology termsGO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsIPR025836 - Zinc knuckle CX2CX4HX4C


Homology Show/hide homology
GenBank top hitse value%identityAlignment
OMO99383.1 hypothetical protein COLO4_13287 [Corchorus olitorius]4.6e-0639.06Show/hide
Query:  DGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD
        D E  WC I +E+L DF Y CGR+GH+ + C F+   ++     ++G+WLRA+ +R   R  R+
Subjt:  DGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD

OMP12130.1 reverse transcriptase [Corchorus capsularis]6.0e-0644.07Show/hide
Query:  WCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD
        WC I +E+  DF Y CGR+GH+ + C F    +SE  V ++G+WLRA+ +R A R  R+
Subjt:  WCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD

OQU92454.1 hypothetical protein SORBI_3001G347001 [Sorghum bicolor]1.0e-0538.54Show/hide
Query:  LMRSGINIRVGDGE-DCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR-TAPRLSRDKSHTSTPNGSGSLDESAPS
        LMR GI +   +GE DCWCPI +E L +F YGCG +GH  ++C      + E    QFG WLR +  R       R +      +GSG    S  S
Subjt:  LMRSGINIRVGDGE-DCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR-TAPRLSRDKSHTSTPNGSGSLDESAPS

XP_022149484.1 uncharacterized protein LOC111017902 [Momordica charantia]2.3e-1043.94Show/hide
Query:  MRSGINIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR
        +R GI ++  DG+D WCP+ +EKL DF Y CG+IGHS R+C       +    +Q+G WLRA++++
Subjt:  MRSGINIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR

XP_022150918.1 uncharacterized protein LOC111018954 [Momordica charantia]7.1e-0744.62Show/hide
Query:  INIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVD---QFGAWLRASVVR
        + I+  DG+D WCP+ +EKL DF Y CGR+GHS R+    +    EG  +   Q+G+WLRAS+++
Subjt:  INIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVD---QFGAWLRASVVR

TrEMBL top hitse value%identityAlignment
A0A1R3JX02 Uncharacterized protein2.2e-0639.06Show/hide
Query:  DGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD
        D E  WC I +E+L DF Y CGR+GH+ + C F+   ++     ++G+WLRA+ +R   R  R+
Subjt:  DGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD

A0A1R3KYI5 Reverse transcriptase2.9e-0644.07Show/hide
Query:  WCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD
        WC I +E+  DF Y CGR+GH+ + C F    +SE  V ++G+WLRA+ +R A R  R+
Subjt:  WCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRD

A0A1Z5S941 CCHC-type domain-containing protein4.9e-0638.54Show/hide
Query:  LMRSGINIRVGDGE-DCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR-TAPRLSRDKSHTSTPNGSGSLDESAPS
        LMR GI +   +GE DCWCPI +E L +F YGCG +GH  ++C      + E    QFG WLR +  R       R +      +GSG    S  S
Subjt:  LMRSGINIRVGDGE-DCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR-TAPRLSRDKSHTSTPNGSGSLDESAPS

A0A6J1D765 uncharacterized protein LOC1110179021.1e-1043.94Show/hide
Query:  MRSGINIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR
        +R GI ++  DG+D WCP+ +EKL DF Y CG+IGHS R+C       +    +Q+G WLRA++++
Subjt:  MRSGINIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVR

A0A6J1DAR4 uncharacterized protein LOC1110189543.4e-0744.62Show/hide
Query:  INIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVD---QFGAWLRASVVR
        + I+  DG+D WCP+ +EKL DF Y CGR+GHS R+    +    EG  +   Q+G+WLRAS+++
Subjt:  INIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVD---QFGAWLRASVVR

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGATGCGTTCCGGTATTAACATCCGTGTTGGCGATGGTGAGGATTGTTGGTGCCCAATCACCTTTGAGAAATTGCTAGACTTCTTTTATGGTTGTGGTCGGATTGG
TCACTCTAGAAGGAAATGTGTATTTACTGATTGGGCAAAGTCGGAGGGTAAAGTTGATCAGTTTGGTGCATGGTTGAGAGCTTCTGTGGTCCGGACAGCTCCGCGGTTGT
CGAGGGACAAATCTCATACGTCAACTCCTAATGGTTCTGGGTCTTTGGATGAGTCAGCCCCTTCTGTCCTGCCCGCTATCTCCTTATCGGACGGAACTTCACTAGTGGGG
GCTGTGGTGCCAGATTCTCTTGCAGGTGACAAAGAGAAGTTAGGTACCACATCTATGGAGCTTAAGGAATGTGGGATTATGAAAGACTGTATTGTGGGACCAGTAACTGC
ATTGGATGTTGTTCCTTCAGTTGGTTTAAATGAGATTATGGGCCTTCTGTGTAAAGATTCTCTTAAGAAGACTGTTGGGTCGTCCCCACCTGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCTGATGCGTTCCGGTATTAACATCCGTGTTGGCGATGGTGAGGATTGTTGGTGCCCAATCACCTTTGAGAAATTGCTAGACTTCTTTTATGGTTGTGGTCGGATTGG
TCACTCTAGAAGGAAATGTGTATTTACTGATTGGGCAAAGTCGGAGGGTAAAGTTGATCAGTTTGGTGCATGGTTGAGAGCTTCTGTGGTCCGGACAGCTCCGCGGTTGT
CGAGGGACAAATCTCATACGTCAACTCCTAATGGTTCTGGGTCTTTGGATGAGTCAGCCCCTTCTGTCCTGCCCGCTATCTCCTTATCGGACGGAACTTCACTAGTGGGG
GCTGTGGTGCCAGATTCTCTTGCAGGTGACAAAGAGAAGTTAGGTACCACATCTATGGAGCTTAAGGAATGTGGGATTATGAAAGACTGTATTGTGGGACCAGTAACTGC
ATTGGATGTTGTTCCTTCAGTTGGTTTAAATGAGATTATGGGCCTTCTGTGTAAAGATTCTCTTAAGAAGACTGTTGGGTCGTCCCCACCTGAGTGA
Protein sequenceShow/hide protein sequence
MLMRSGINIRVGDGEDCWCPITFEKLLDFFYGCGRIGHSRRKCVFTDWAKSEGKVDQFGAWLRASVVRTAPRLSRDKSHTSTPNGSGSLDESAPSVLPAISLSDGTSLVG
AVVPDSLAGDKEKLGTTSMELKECGIMKDCIVGPVTALDVVPSVGLNEIMGLLCKDSLKKTVGSSPPE