CuGenDBv2

Gene ID	Lag0041553
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	chr13:20294129..20296389
RNA-Seq Expression	Lag0041553
Synteny	Lag0041553
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.1e-36

36.48

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Query:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------
        +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+   +    T  N   NN      GG+ N ++N        
Subjt:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------

Query:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL
                                      +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL+IG +Y G N+++  NG+GL
Subjt:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL

Query:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS
         + H GS S  SS+ P   F   NLL VP ITKNLISVSQFA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Subjt:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS

Query:  QVLHTSLSPFTYRPILRL
        + +  ++ P +  P+L L
Subjt:  QVLHTSLSPFTYRPILRL

KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.0e-34

37.3

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Query:  MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVS---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLL
        +G  +TE+     + I +    G+K + VKL++DNFL WK Q   I+  LE +   + L S   PP +  +  GS   S            P P+     
Subjt:  MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVS---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLL

Query:  LTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVA------TSGASN
          +ES  +  S + +  +LPSVN     T+   +    T  N   NN    QR  + N      G     GN +     +   L   A       SGA+N
Subjt:  LTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVA------TSGASN

Query:  HVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK
        H+T  LSNL+ G +Y G N+++  NG+GL + H GS S  SS+ P   F  KNLLHVP ITKNLISVS FA+DN VFFEFHP  C+VKD   G++LLQG 
Subjt:  HVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK

Query:  VSDGLYQFSLE
        ++DGLY+F+++
Subjt:  VSDGLYQFSLE

RVW44519.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

6.5e-32

55.15

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Query:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI
        SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +
Subjt:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI

Query:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV
        LLQG +  GLYQF+L K        G S SN K+++
Subjt:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV

RVW60229.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

6.5e-32

55.15

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Query:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI
        SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +
Subjt:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI

Query:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV
        LLQG +  GLYQF+L K        G S SN K+++
Subjt:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV

TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.1e-36

36.48

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Query:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------
        +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+   +    T  N   NN      GG+ N ++N        
Subjt:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------

Query:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL
                                      +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL+IG +Y G N+++  NG+GL
Subjt:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL

Query:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS
         + H GS S  SS+ P   F   NLL VP ITKNLISVSQFA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Subjt:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS

Query:  QVLHTSLSPFTYRPILRL
        + +  ++ P +  P+L L
Subjt:  QVLHTSLSPFTYRPILRL

TrEMBL top hits

e value

%identity

Alignment

A0A438EA49 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.1e-32

55.15

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Query:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI
        SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +
Subjt:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI

Query:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV
        LLQG +  GLYQF+L K        G S SN K+++
Subjt:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV

A0A438FJP6 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.1e-32

55.15

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Query:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI
        SGA+NHVT DL NLN G +Y G++K+H+GNG GL + HIG S   SSS+P+ +   KN+L VP I KNL+SVSQFARDN V+FEFHP  CFVKD     +
Subjt:  SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRI

Query:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV
        LLQG +  GLYQF+L K        G S SN K+++
Subjt:  LLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQV

A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.5e-37

36.48

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Query:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------
        +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+   +    T  N   NN      GG+ N ++N        
Subjt:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------

Query:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL
                                      +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL+IG +Y G N+++  NG+GL
Subjt:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL

Query:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS
         + H GS S  SS+ P   F   NLL VP ITKNLISVSQFA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Subjt:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS

Query:  QVLHTSLSPFTYRPILRL
        + +  ++ P +  P+L L
Subjt:  QVLHTSLSPFTYRPILRL

A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94

5.5e-37

36.48

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Query:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------
        +GLGS+Y S ++VI+ +  +P + +V SLLLTQES  +  S + +  +LPSVN     T+   +    T  N   NN      GG+ N ++N        
Subjt:  SGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNN------GGQRNSKNN--------

Query:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL
                                      +P +   + T M NH     +V A+ L + +     SGA+NH+T  LSNL+IG +Y G N+++  NG+GL
Subjt:  ------------------------------APETIEGTATIMGNHSVNYVVVLAILLFVAT-----SGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGL

Query:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS
         + H GS S  SS+ P   F   NLL VP ITKNLISVSQFA+DN VFFEFHP  C+VKD   G++LLQG ++DGLY+F++E      S      SN  +
Subjt:  DVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKS

Query:  QVLHTSLSPFTYRPILRL
        + +  ++ P +  P+L L
Subjt:  QVLHTSLSPFTYRPILRL

A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.4e-34

37.3

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Query:  MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVS---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLL
        +G  +TE+     + I +    G+K + VKL++DNFL WK Q   I+  LE +   + L S   PP +  +  GS   S            P P+     
Subjt:  MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVS---PPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLL

Query:  LTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVA------TSGASN
          +ES  +  S + +  +LPSVN     T+   +    T  N   NN    QR  + N      G     GN +     +   L   A       SGA+N
Subjt:  LTQESIIERNSTINTNGSLPSVNYT--ATQAPKQQQPNTQDNKKRNNG--GQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVA------TSGASN

Query:  HVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK
        H+T  LSNL+ G +Y G N+++  NG+GL + H GS S  SS+ P   F  KNLLHVP ITKNLISVS FA+DN VFFEFHP  C+VKD   G++LLQG 
Subjt:  HVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGK

Query:  VSDGLYQFSLE
        ++DGLY+F+++
Subjt:  VSDGLYQFSLE

SwissProt top hits

e value

%identity

Alignment

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1

1.4e-16

29.56

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Query:  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRNSK------------NNAPETI
        L  EY   ++ I  KD  P L +++  LL  ES I+  +S      +  +V++  T          ++N+  N     NSK            NN  +  
Subjt:  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRNSK------------NNAPETI

Query:  EGTATIMG--NHSVNYVVVLAILL-------------------------------FVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGS
         G   I G   HS      L   L                               ++  SGA++H+TSD +NL++   YTG + V V +G+ + + H GS
Subjt:  EGTATIMG--NHSVNYVVVLAILL-------------------------------FVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGS

Query:  SSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSL
        +SL + S P N+    N+L+VP I KNLISV +    N V  EF P    VKD   G  LLQGK  D LY++ +
Subjt:  SSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

3.7e-14

28.76

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Query:  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRN-----------SKNNAPETIE
        L  +Y   ++ I  KD  P L +++  L+ +ES ++  NS      +   V +  T   + Q  N  DN+  NN   R+           S N  P+   
Subjt:  LGSEYDSTVNVITEKDITPPLPKVYSLLLTQES-IIERNSTINTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRN-----------SKNNAPETIE

Query:  GTATI--MGNHSVNYVVVL----------------------AILL---------FVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSS
        G   I  +  HS      L                      A L          ++  SGA++H+TSD +NL+    YTG + V + +G+ + + H GS+
Subjt:  GTATI--MGNHSVNYVVVL----------------------AILL---------FVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFHIGSS

Query:  SLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQF------SLEKVASQDSKGGCSSSNFKSQV
        SL +SS   ++     +L+VP I KNLISV +    N+V  EF P    VKD   G  LLQGK  D LY++      ++   AS  SK   + S++ S++
Subjt:  SLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQF------SLEKVASQDSKGGCSSSNFKSQV

Query:  LHTSLS
         H SL+
Subjt:  LHTSLS

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGGGTTCTTCCTCCACAGAGTCTGAAACTCTGAACCCTACTCAGATTCTGAAGGCCATCAATCCTGGGAGCAAAACGAACACAGTAAAATTAGATGAAGATAATTTTCT
GTATTGGAAGATTCAAAGGTCCTTGATTGTGAAACTGCTTGAGACATTTGGAAGGTTCTCAATGCTCGTTTCTCCTCCCCCGCAATCTTTCTCAGGATTGGGTTCAGAAT
ATGACTCCACAGTGAACGTGATTACGGAGAAAGATATCACCCCACCTCTACCGAAAGTGTACTCGCTGCTGTTGACTCAAGAAAGCATAATTGAGAGGAACTCCACAATA
AATACAAATGGCTCCTTACCGTCTGTAAACTACACTGCCACTCAAGCTCCCAAGCAACAGCAACCAAATACCCAAGATAATAAAAAACGTAACAATGGAGGACAAAGAAA
TTCGAAGAACAATGCACCAGAAACAATCGAAGGAACTGCAACAATAATGGGAAACCACAGTGTCAATTATGTTGTCGTTTTGGCCATACTGTTGTTCGTTGCTACTTCAG
GAGCCTCCAACCATGTTACAAGTGACCTCTCCAATCTGAATATTGGTGTTGATTACACTGGAGACAACAAAGTCCATGTAGGCAATGGTGCAGGTTTGGATGTCTTTCAT
ATTGGTTCTTCCTCTCTTAAATCATCTTCTAATCCTAGCAATATTTTTCATTTTAAAAACCTGCTTCATGTTCCTCAAATAACAAAAAATCTCATAAGTGTTAGCCAATT
CGCTAGAGATAATCAAGTGTTTTTTGAATTTCATCCTCACTGTTGTTTTGTGAAGGATACTCTAATTGGCCGAATTCTTCTCCAAGGCAAGGTGTCTGATGGACTGTATC
AATTCTCATTGGAAAAGGTTGCATCCCAAGATTCTAAAGGTGGTTGCTCCTCTTCAAACTTCAAATCTCAAGTACTTCATACCTCTCTGTCTCCTTTTACCTATCGACCT
ATTCTTCGTCTTCAAACTGACGGAGGAGGTGAATTTCGTTCCTTTGCCACTGATAACTGCCCAAAAGATTATGCTGCTGAGCGACTGGAAGGAGCAAATTCTATGCTGCA
GCAAAACTGGGAGCAGAAACTGCCACGTCACAGCTCGTTAGCCAACTTCATTAACCGACTTCTGTTGAGTTATTTTCGTGATAAAGGATCAAGGAGAGCCTTACACGTGT
CCTAG

mRNA sequence

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Protein sequence

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MGSSSTESETLNPTQILKAINPGSKTNTVKLDEDNFLYWKIQRSLIVKLLETFGRFSMLVSPPPQSFSGLGSEYDSTVNVITEKDITPPLPKVYSLLLTQESIIERNSTI
NTNGSLPSVNYTATQAPKQQQPNTQDNKKRNNGGQRNSKNNAPETIEGTATIMGNHSVNYVVVLAILLFVATSGASNHVTSDLSNLNIGVDYTGDNKVHVGNGAGLDVFH
IGSSSLKSSSNPSNIFHFKNLLHVPQITKNLISVSQFARDNQVFFEFHPHCCFVKDTLIGRILLQGKVSDGLYQFSLEKVASQDSKGGCSSSNFKSQVLHTSLSPFTYRP
ILRLQTDGGGEFRSFATDNCPKDYAAERLEGANSMLQQNWEQKLPRHSSLANFINRLLLSYFRDKGSRRALHVS

Lag0041553 (gene) of Sponge gourd (AG-4) v1 genome