CuGenDBv2

Gene ID	Lag0041564
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Ribonuclease H
Genome location	chr13:20535914..20541090
RNA-Seq Expression	Lag0041564
Synteny	Lag0041564
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022143495.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia]

1.5e-64

82.05

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM VVLPIEVEIPSLRV+ME  L+EAEWVQ RYEQL+FVEEKRLTALCRGQLYQ RMMKAYD+ V PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPF+VKKAF GGALVL NMD  E L+ VN D VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

XP_022147189.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]

2.6e-64

82.05

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Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM+VVLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTALCR QLYQRRMMKAYDKKV PR F+E D
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFVVKKAF GGALVL NMD  E  + V +D VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

XP_022150030.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111018303 [Momordica charantia]

5.3e-65

82.69

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM+ VLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTAL RGQLYQRRMMKAYDKKV  R FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFV+KKAF GGALVL NMD  E L+ +NSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

XP_022157796.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111024415 [Momordica charantia]

4.0e-65

83.33

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Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST  T FSL YGM+VVL IEVEIPSLRV+ME  L  AEWVQ RYEQLNFVEEKRLTALCRGQLYQRRMMKAYD+KV PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFVVKKAF GGALVL NMD  E L+ VNSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

XP_022158986.1 LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]

6.2e-66

84.62

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Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM  VLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKV PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK ILP  KDHRGKWT NYEGPFVVKKAF GGALVL NMD  E L+ VNSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

TrEMBL top hits

e value

%identity

Alignment

A0A6J1CNY7 Ribonuclease H

7.4e-65

82.05

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM VVLPIEVEIPSLRV+ME  L+EAEWVQ RYEQL+FVEEKRLTALCRGQLYQ RMMKAYD+ V PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPF+VKKAF GGALVL NMD  E L+ VN D VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

A0A6J1D099 Ribonuclease H

1.3e-64

82.05

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM+VVLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTALCR QLYQRRMMKAYDKKV PR F+E D
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFVVKKAF GGALVL NMD  E  + V +D VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

A0A6J1D7C7 Ribonuclease H

2.6e-65

82.69

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM+ VLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTAL RGQLYQRRMMKAYDKKV  R FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFV+KKAF GGALVL NMD  E L+ +NSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

A0A6J1DZ90 Ribonuclease H

2.0e-65

83.33

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST  T FSL YGM+VVL IEVEIPSLRV+ME  L  AEWVQ RYEQLNFVEEKRLTALCRGQLYQRRMMKAYD+KV PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK+ILP  KDHRGKWTPNYEGPFVVKKAF GGALVL NMD  E L+ VNSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

A0A6J1E2J7 Ribonuclease H

3.0e-66

84.62

Show/hide

Query:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD
        MLPFALHGYRTSVRTST AT FSL YGM  VLPIEVEIPSLRV+ME  L+EAEWVQ RYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKV PR FREGD
Subjt:  MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGD

Query:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR
        LVLK ILP  KDHRGKWT NYEGPFVVKKAF GGALVL NMD  E L+ VNSD VR
Subjt:  LVLKQILPFLKDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVR

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCTTCCTTTTGCCTTACATGGATATCGCACATCGGTTCGCACTTCAACTAGGGCAACACAATTTTCATTAGATTATGGTATGGATGTTGTTCTTCCTATTGAAGTGGA
AATTCCATCATTAAGAGTCCTCATGGAGACTAATTTAGAAGAGGCTGAATGGGTCCAAAACCGCTATGAGCAGCTCAACTTTGTTGAAGAAAAGAGATTGACAGCATTGT
GCAGAGGTCAACTTTACCAAAGACGAATGATGAAAGCCTATGATAAGAAAGTGTGTCCTAGAGTATTCAGAGAAGGAGATTTAGTCTTAAAACAAATTCTTCCTTTTCTA
AAAGATCACCGAGGCAAGTGGACCCCAAACTATGAAGGACCATTCGTGGTGAAGAAAGCTTTCTTTGGAGGAGCTTTAGTCTTGACTAACATGGATCGTAATGAGCTGCT
AAGTCTAGTTAATTCAGATCAGGTCCGTTTTCAGTTTTCTCTTGGTGAAACCGAACCCGACTATTCAGTCGAGGTCGAAGTCTGCGTCAATCCAGGTCCGTTTTCAATTT
TTATCTCGGTTAAATCGAATCCGACTATTCAGTCGAGGTCGAAGTCTGTGTCAATCCAGGCTTGCATCGTCTCTATGGATACTAGTATCCACACTTTCAACATATACGAC
AAGGAAACAATTGTGATATGTGAAATTTTCTTTCGAGCATCAAGTCTAATAAGGTCTGTGATGGAATCAGTGCCCAAACGCTATCTTATAGGACTGAAACTCGATGGAAA
GCCATTATTGAAAAAATCTGGTGGTGCAAAGATAGTGGAGATGAATTTGAATTCTGGATTTCAGGCAAAGATTTGA

mRNA sequence

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Protein sequence

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MLPFALHGYRTSVRTSTRATQFSLDYGMDVVLPIEVEIPSLRVLMETNLEEAEWVQNRYEQLNFVEEKRLTALCRGQLYQRRMMKAYDKKVCPRVFREGDLVLKQILPFL
KDHRGKWTPNYEGPFVVKKAFFGGALVLTNMDRNELLSLVNSDQVRFQFSLGETEPDYSVEVEVCVNPGPFSIFISVKSNPTIQSRSKSVSIQACIVSMDTSIHTFNIYD
KETIVICEIFFRASSLIRSVMESVPKRYLIGLKLDGKPLLKKSGGAKIVEMNLNSGFQAKI

Lag0041564 (gene) of Sponge gourd (AG-4) v1 genome