CuGenDBv2

Gene ID	Lag0041574
Organism	Luffa acutangula AG-4 (Sponge gourd (AG-4) v1)
Description	Gag/pol protein
Genome location	chr13:20969151..20977462
RNA-Seq Expression	Lag0041574
Synteny	Lag0041574
Gene Ontology terms	GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0042496.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-69

57.04

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI+K+L +Y +QNSK+GLLPFRH VHLSKEQ PKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD
                                                       +RSIKQGC ADSTMEAEYVAACEAAKEAVW+RKFL DLEVVPNMNL ITLY D
Subjt:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD

Query:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        NSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTK LTAK+FEGHLE LG +
Subjt:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

KAA0053385.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]

3.5e-75

75.38

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ-----------------SYRSIKQGCNADSTMEAEYVAACEA
        +SQA+YI+KML +Y +QNSK+ LLPFRH VHLSKEQCPKTPQE EDMR+IPYAS VG                     SIKQGC ADSTME EYVAAC+A
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ-----------------SYRSIKQGCNADSTMEAEYVAACEA

Query:  AKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        AKEA+W+RKFL DLEVVPNMNL ITLY DNSGAV NSKE RSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTK LTAK+FEGHLE LG +
Subjt:  AKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

KAA0060794.1 putative Integrase core domain [Cucumis melo var. makuwa]

4.8e-72

68.35

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------SYRSIK
        +SQA+YI+KML +Y +QNSK+ LLPF+H VHLSKEQCPKTPQE+EDMR+IPYAS VG                                      +RSIK
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------SYRSIK

Query:  QGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFT
        Q C ADSTMEAEYVAACEAAKEAVW+RKFL DLEVVPNMNL ITLY DNSGAV NSKEPRSHKRGK+IERKYHLIREIVQR DVIVTKIASEHNIADPFT
Subjt:  QGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFT

Query:  KALTAKLFEGHLEGLGAK
        K LTAK+F+ HLE LG +
Subjt:  KALTAKLFEGHLEGLGAK

TYK11909.1 gag/pol protein [Cucumis melo var. makuwa]

5.6e-73

65.24

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI KML +Y +QNSK+GLLPFRH VHLSKEQCPKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  ---------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVI
                  +RSIKQGC  DSTMEAEYVAACEAAKEA+W+RKFL DLEVVPNMNL ITLY DNSGAVT+SKEPRSHK+GKHIERKYHLIREIVQRGDVI
Subjt:  ---------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVI

Query:  VTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        VTKIASEHNIADPFTK LTAK+F GHLE LG +
Subjt:  VTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

TYK20422.1 gag/pol protein [Cucumis melo var. makuwa]

4.8e-72

66.67

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI+KML +Y +QNSK+GLLPFRH VHLSKEQCPKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  SYRSIKQGC-NADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH
         +RSIKQGC  ADSTMEAEYV ACE AKEAVW+RKF+ DLEV+PNMNL ITLY DNSGAV NSKE RSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH
Subjt:  SYRSIKQGC-NADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH

Query:  NIADPFTKALTAKLFEGHLEGLGAK
        NIADPFTK LTAK+FE HLE LG +
Subjt:  NIADPFTKALTAKLFEGHLEGLGAK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZD0 Gag/pol protein

8.2e-70

57.04

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI+K+L +Y +QNSK+GLLPFRH VHLSKEQ PKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD
                                                       +RSIKQGC ADSTMEAEYVAACEAAKEAVW+RKFL DLEVVPNMNL ITLY D
Subjt:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD

Query:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        NSGAV NSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTK LTAK+FEGHLE LG +
Subjt:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

A0A5A7UI63 Putative gag-pol polyprotein

1.7e-75

75.38

Show/hide

Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ-----------------SYRSIKQGCNADSTMEAEYVAACEA
        +SQA+YI+KML +Y +QNSK+ LLPFRH VHLSKEQCPKTPQE EDMR+IPYAS VG                     SIKQGC ADSTME EYVAAC+A
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ-----------------SYRSIKQGCNADSTMEAEYVAACEA

Query:  AKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        AKEA+W+RKFL DLEVVPNMNL ITLY DNSGAV NSKE RSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTK LTAK+FEGHLE LG +
Subjt:  AKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

A0A5A7V0F0 Putative Integrase core domain

2.3e-72

68.35

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------SYRSIK
        +SQA+YI+KML +Y +QNSK+ LLPF+H VHLSKEQCPKTPQE+EDMR+IPYAS VG                                      +RSIK
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------SYRSIK

Query:  QGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFT
        Q C ADSTMEAEYVAACEAAKEAVW+RKFL DLEVVPNMNL ITLY DNSGAV NSKEPRSHKRGK+IERKYHLIREIVQR DVIVTKIASEHNIADPFT
Subjt:  QGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFT

Query:  KALTAKLFEGHLEGLGAK
        K LTAK+F+ HLE LG +
Subjt:  KALTAKLFEGHLEGLGAK

A0A5D3CNQ8 Gag/pol protein

2.7e-73

65.24

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI KML +Y +QNSK+GLLPFRH VHLSKEQCPKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  ---------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVI
                  +RSIKQGC  DSTMEAEYVAACEAAKEA+W+RKFL DLEVVPNMNL ITLY DNSGAVT+SKEPRSHK+GKHIERKYHLIREIVQRGDVI
Subjt:  ---------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVI

Query:  VTKIASEHNIADPFTKALTAKLFEGHLEGLGAK
        VTKIASEHNIADPFTK LTAK+F GHLE LG +
Subjt:  VTKIASEHNIADPFTKALTAKLFEGHLEGLGAK

A0A5D3DA25 Gag/pol protein

2.3e-72

66.67

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQA+YI+KML +Y +QNSK+GLLPFRH VHLSKEQCPKTPQE+EDMR+IPYAS VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  SYRSIKQGC-NADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH
         +RSIKQGC  ADSTMEAEYV ACE AKEAVW+RKF+ DLEV+PNMNL ITLY DNSGAV NSKE RSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH
Subjt:  SYRSIKQGC-NADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEH

Query:  NIADPFTKALTAKLFEGHLEGLGAK
        NIADPFTK LTAK+FE HLE LG +
Subjt:  NIADPFTKALTAKLFEGHLEGLGAK

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

2.8e-14

38.46

Show/hide

Query:  KQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPF
        +Q   A S+ EAEY+A  EA +EA+W++  L  + +   +   I +Y DN G ++ +  P  HKR KHI+ KYH  RE VQ   + +  I +E+ +AD F
Subjt:  KQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPF

Query:  TKALTAKLFEGHLEGLG
        TK L A  F    + LG
Subjt:  TKALTAKLFEGHLEGLG

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.9e-16

26.05

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Query:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------
        +SQ  YIE++L ++ ++N+K    P    + LSK+ CP T +E  +M ++PY+S VG                                           
Subjt:  MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQ------------------------------------------

Query:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD
                                                      S++S  Q C A ST EAEY+AA E  KE +W+++FL +L +         +Y D
Subjt:  ----------------------------------------------SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFD

Query:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFE
        +  A+  SK    H R KHI+ +YH IRE+V    + V KI++  N AD  TK +    FE
Subjt:  NSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFE

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

5.4e-05

33.73

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Query:  SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIRE
        S++S KQ   + S+ EAEY A   A  E +W+ +F  +L++   ++    L+ DN+ A+  +     H+R KHIE   H +RE
Subjt:  SYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLYFDNSGAVTNSKEPRSHKRGKHIERKYHLIRE

Sequences

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CDS sequence

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ATGTCTCAAGCATCCTATATAGAGAAGATGTTGTCTAAATATAAGTTGCAGAATTCCAAGAGGGGTTTACTACCCTTCAGGCATGAAGTTCATCTGTCTAAGGAACAGTG
TCCTAAGACACCTCAAGAAATTGAGGATATGAGACAGATCCCTTATGCTTCAGTAGTGGGGCAATCTTATCGTAGCATCAAACAAGGATGCAATGCAGACTCCACCATGG
AGGCCGAATATGTTGCTGCTTGTGAAGCAGCTAAGGAAGCTGTATGGATTAGAAAGTTCTTGATGGATTTGGAAGTTGTTCCAAATATGAACTTGTCAATCACCCTTTAT
TTTGATAATAGTGGTGCAGTGACAAATTCTAAAGAACCTCGCAGTCACAAGAGAGGCAAGCACATAGAGCGCAAGTATCATCTCATCAGAGAGATCGTGCAACGAGGGGA
CGTGATCGTCACGAAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACGAAGGCTCTCACGGCTAAATTGTTCGAGGGTCATCTAGAGGGTCTAGGCGCTAAAAGGT
CACAGTGTCGAGACGCTGCGACCTTAGCGACTCGACGCTGTGGATATCGGGATTCAATTGCATATGGGAGAATCATGTATGCTCGGAGAGATATGTGTGATTTTAGTTTG
TCGCAACGTCATCGCGACGCGGAGCGGCCGACGTCCTTTCCTAAGGGTCTCTTTCGAGGTGAGAGGTTTGGAGTCGCCACCAATCATCTTGGGGAACTTTGTTGGAATCA
ACGGAAAGCGGCGACACGGTGGCGGCACGGCAGTGGCGGCGGCGGCAGTGGTGGCGGCAACGGCGGTACGTCAGTGAGTGGCGATGTCGGTACGGCGGTGAGTGGCGGCG
GCGGTACGGCAGTCATATTGTGCATGCGAAGGGCTAGGGAATTGGCCTTAGTTCCCTTAGATCCAGAGATAGAAAGAACATACAATAGACTTCGAAGGGAAAATCAAGAA
AATATCCAAATGGCCAATCCTAATCATGAGGAGCCTAAACCCATCAGGGACTATTTTCAGCCGGTCTTTCAGGAACAACAGTCGGGGATTGTCTATGCCCCGATCAATGC
TAACAATTTTGAGCTGAAAACAAGTCTCAATAGCTCGAGATTGTGCTTACAGAGGATCACCCATGGAGGATCCAAATTTTCACCTGAAATCCTTCCTAGACATCTGATAA
AGCGAGGGACTGGTTACAATCTATCCACCTGGGAGCATTACCACTTGGGATGCTTTGGTCCAGGCATTCTTAAAGAACTGTTCGAGGCTTGGGAGAGATTTAAAGAGCTG
CTAAGGAAGTGCCCTCAGCATGGCTACCCCGACTGGCTCCAGGTTCAATTATTTTATAATGGCTTAACTCCTAGCACAAAAACTATCGTTGATGTAGTAGCAGGTGGGAC
TCTGTTGTCCAAAACTGTTGAGAGTGCTAGGACTTTGTTAGAGGATATGGCCACCAACAGCTATCAGTGGCCATCTGAGCGGTCGGGACACAAAAAGATTGTTGTCGGAG
TGTTTGAGATTGATAACGTAAGTGCACTGCAGGCCCATATGTCTTCCTTGGCTAATGCGTTTTTAAAGTTTTCAGGTATAGGGAGTGCTCAATCGATCGAGTCTGTAGTT
GCCCTCGCATCTCAGACTCAGGAGGAAAATCTCGAGCAAGTCCAGTATGTTTCGAATTATAATTCTAGGGGGTATAATAATAATTCTACACCTACACATTATCACCCTAG
TAATAGAAATCATGAGAACTTTTCCTATGCTAATAATAAGAATGTGTTGAATCCTCCTGGCTTCACTCCTAAACAAGAAAGTAAACAATCTTTAGAGGATCTTGTTGGAG
CTTTTATTGCAGAATCAAGTAACAGGTCAAATAAGCTCGATGAGGTCGTGATTGCCATAAACAACACTGTCAATGGCCATTCTGCAGCCATAAAAAACATAGAGACTCAG
CTGGGACAATTGGTAAGTGTTTCAACACCATGA

mRNA sequence

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Protein sequence

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MSQASYIEKMLSKYKLQNSKRGLLPFRHEVHLSKEQCPKTPQEIEDMRQIPYASVVGQSYRSIKQGCNADSTMEAEYVAACEAAKEAVWIRKFLMDLEVVPNMNLSITLY
FDNSGAVTNSKEPRSHKRGKHIERKYHLIREIVQRGDVIVTKIASEHNIADPFTKALTAKLFEGHLEGLGAKRSQCRDAATLATRRCGYRDSIAYGRIMYARRDMCDFSL
SQRHRDAERPTSFPKGLFRGERFGVATNHLGELCWNQRKAATRWRHGSGGGGSGGGNGGTSVSGDVGTAVSGGGGTAVILCMRRARELALVPLDPEIERTYNRLRRENQE
NIQMANPNHEEPKPIRDYFQPVFQEQQSGIVYAPINANNFELKTSLNSSRLCLQRITHGGSKFSPEILPRHLIKRGTGYNLSTWEHYHLGCFGPGILKELFEAWERFKEL
LRKCPQHGYPDWLQVQLFYNGLTPSTKTIVDVVAGGTLLSKTVESARTLLEDMATNSYQWPSERSGHKKIVVGVFEIDNVSALQAHMSSLANAFLKFSGIGSAQSIESVV
ALASQTQEENLEQVQYVSNYNSRGYNNNSTPTHYHPSNRNHENFSYANNKNVLNPPGFTPKQESKQSLEDLVGAFIAESSNRSNKLDEVVIAINNTVNGHSAAIKNIETQ
LGQLVSVSTP

Lag0041574 (gene) of Sponge gourd (AG-4) v1 genome