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Lag0041580 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041580
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRibonuclease H
Genome locationchr13:21102095..21106181
RNA-Seq ExpressionLag0041580
SyntenyLag0041580
Gene Ontology termsGO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051588.1 uncharacterized protein E6C27_scaffold174G001310 [Cucumis melo var. makuwa]3.4e-3090.28Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEVYTNGAYKIVD+DGLKIGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
KAA0053732.1 uncharacterized protein E6C27_scaffold135G001090 [Cucumis melo var. makuwa]7.6e-3088.89Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKIVD+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
TYK02262.1 uncharacterized protein E5676_scaffold18G00630 [Cucumis melo var. makuwa]9.9e-3087.5Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKI+D+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
XP_016899658.1 PREDICTED: uncharacterized protein LOC107990608 [Cucumis melo]7.6e-3088.89Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKIVD+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
XP_031739134.1 uncharacterized protein LOC116402863 [Cucumis sativus]9.9e-3088.89Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEVYTNGAYKIVD+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
TrEMBL top hitse value%identityAlignment
A0A1S4DUL5 Ribonuclease H3.7e-3088.89Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKIVD+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
A0A5A7U8J5 Ribonuclease H1.6e-3090.28Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K V+PRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEVYTNGAYKIVD+DGLKIGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
A0A5A7UD71 Uncharacterized protein3.7e-3088.89Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKIVD+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
A0A5A7UZS6 Ribonuclease H4.8e-3087.5Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKI+D+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
A0A5D3BTY1 Ribonuclease H4.8e-3087.5Show/hide
Query:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
        MSKAF+K+VRPRSFQVG+LVLAVRRPIITTRHTG+KFTPKWDGPY+VKEV+TNGAYKI+D+DGL+IGPINGK
Subjt:  MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTAAAGCTTTCAACAAAAAGGTACGACCTCGTTCATTTCAAGTTGGTGAGCTCGTACTCGCGGTTCGAAGACCTATCATCACAACTCGACATACAGGACACAAGTT
TACACCTAAATGGGACGGACCCTACGTTGTGAAAGAAGTCTACACAAATGGAGCATACAAGATAGTTGACAAAGACGGGCTCAAAATTGGCCCAATCAACGGCAAGCGAG
TCGGTGATCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTTACTCAGATCTCCCAATAAAATG
GGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTTACTCAGATCACCAATAAAATGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGAC
TACCCCTGCAGAGGAGGCCACCATTCATTTTGGGCATTCAGACAGAGTCAGAGAAGCCAGAGCCCAGAGCATTCTCCCAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTTC
AGAGAATTCAGAAGATCAAAGATTCAGAATTCGACCATCTCAAGACTCAGAAGATCCAACGACTGAAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTG
AAGATTCAACCTTCCTCTGTCTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCTAAAGCTTTCAACAAAAAGGTACGACCTCGTTCATTTCAAGTTGGTGAGCTCGTACTCGCGGTTCGAAGACCTATCATCACAACTCGACATACAGGACACAAGTT
TACACCTAAATGGGACGGACCCTACGTTGTGAAAGAAGTCTACACAAATGGAGCATACAAGATAGTTGACAAAGACGGGCTCAAAATTGGCCCAATCAACGGCAAGCGAG
TCGGTGATCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTTACTCAGATCTCCCAATAAAATG
GGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCGAATCTGGTTACTCAGATCACCAATAAAATGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGAC
TACCCCTGCAGAGGAGGCCACCATTCATTTTGGGCATTCAGACAGAGTCAGAGAAGCCAGAGCCCAGAGCATTCTCCCAAGGTCCAGAGTCTTCAGAAGTCAGAGAGTTC
AGAGAATTCAGAAGATCAAAGATTCAGAATTCGACCATCTCAAGACTCAGAAGATCCAACGACTGAAAGACTCCAAAGAATCAACCGTTTCTTCATCAAGATACAAGTTG
AAGATTCAACCTTCCTCTGTCTGA
Protein sequenceShow/hide protein sequence
MSKAFNKKVRPRSFQVGELVLAVRRPIITTRHTGHKFTPKWDGPYVVKEVYTNGAYKIVDKDGLKIGPINGKRVGDHPCRLLRSPNKMGTGLAGVHHCRRIWLLRSPNKM
GTGLAGVHHCRRIWLLRSPIKWDWSSRSASLKANLVTTPAEEATIHFGHSDRVREARAQSILPRSRVFRSQRVQRIQKIKDSEFDHLKTQKIQRLKDSKESTVSSSRYKL
KIQPSSV