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Lag0041581 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041581
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr13:21135968..21139642
RNA-Seq ExpressionLag0041581
SyntenyLag0041581
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032527.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.4e-0751.32Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKK AS +S  SD+Y+GPITR RSK I + E++Q S IA +I  Q++E  + G+VI++NPL+D S S+S ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

KAA0061113.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.4e-0753.95Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  S++Y GPITR RSK I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S SSS ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

KAA0062020.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.9e-0753.95Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  SD+Y GPITR RSK I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S S+S + K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

KAA0065806.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]8.4e-0855.26Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  SD+Y GPITR RSK I + E++Q S IA  I  Q++E  + G+VI+ENPL+D S S+S ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

TYK05006.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-0746.24Show/hide
Query:  SSISLIQDLRKKSSKEAMASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        +S+ LI     KS++++MASKKAAS++S  +D+Y GPITR R K I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S S+S ++K+
Subjt:  SSISLIQDLRKKSSKEAMASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

TrEMBL top hitse value%identityAlignment
A0A5A7ST49 Ty3-gypsy retrotransposon protein1.2e-0751.32Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKK AS +S  SD+Y+GPITR RSK I + E++Q S IA +I  Q++E  + G+VI++NPL+D S S+S ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

A0A5A7V3Z9 Ty3-gypsy retrotransposon protein9.1e-0853.95Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  SD+Y GPITR RSK I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S S+S + K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

A0A5D3BDK1 Ty3-gypsy retrotransposon protein4.1e-0855.26Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  SD+Y GPITR RSK I + E++Q S IA  I  Q++E  + G+VI+ENPL+D S S+S ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

A0A5D3BY54 Ty3-gypsy retrotransposon protein6.9e-0853.95Show/hide
Query:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        MASKKAASN+S  S++Y GPITR RSK I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S SSS ++K+
Subjt:  MASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

A0A5D3C3J8 Ty3-gypsy retrotransposon protein5.3e-0846.24Show/hide
Query:  SSISLIQDLRKKSSKEAMASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE
        +S+ LI     KS++++MASKKAAS++S  +D+Y GPITR R K I + E++Q S +A  I  Q++E  + G+VI+ENPL+D S S+S ++K+
Subjt:  SSISLIQDLRKKSSKEAMASKKAASNTS--SDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPLFDYSTSSSEQAKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCCCAGAGGCGAAACGTGCCAATGGGTCGGGCCAAGGCCGAAGGGACCGGGCTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCAGTCGGCATTGGCCATGGGCC
GAGGCCGACCCTAGGCCCGCTTGTGCGGGTCGAGCTCGTCCGACTATGTTTGGTCCCTGTTGCCTCTGGCCACCCCGACTCCACCTGGTTCGTTCCAAAACGCCTCCGAA
TTCCTAAAAACCCTAGAAGCATGAGCAGGATATGTAATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGATCCTGCTGCAAGACTCTGAAGATCGA
AGCTTATGCAAAATTCAAAAGCTTGAAGATTCCTCCAAGACTCTGAAGACTGAAGCCTCTACAAGTTTGGCACGCCCGGTGGGATTTCTCTACTTTTCATCTATTTCTCT
CATCCAAGATCTACGAAAAAAAAGTTCTAAAGAAGCAATGGCATCCAAGAAAGCTGCTTCCAATACTTCAAGCGACTCGTACGTAGGACCAATTACTCGCGGACGCTCTA
AGGAAATTCAAAAGTCAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGACCCAGATGGTAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTA
TTTGACTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCCCAGAGGCGAAACGTGCCAATGGGTCGGGCCAAGGCCGAAGGGACCGGGCTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCCAGTCGGCATTGGCCATGGGCC
GAGGCCGACCCTAGGCCCGCTTGTGCGGGTCGAGCTCGTCCGACTATGTTTGGTCCCTGTTGCCTCTGGCCACCCCGACTCCACCTGGTTCGTTCCAAAACGCCTCCGAA
TTCCTAAAAACCCTAGAAGCATGAGCAGGATATGTAATGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGATCCTGCTGCAAGACTCTGAAGATCGA
AGCTTATGCAAAATTCAAAAGCTTGAAGATTCCTCCAAGACTCTGAAGACTGAAGCCTCTACAAGTTTGGCACGCCCGGTGGGATTTCTCTACTTTTCATCTATTTCTCT
CATCCAAGATCTACGAAAAAAAAGTTCTAAAGAAGCAATGGCATCCAAGAAAGCTGCTTCCAATACTTCAAGCGACTCGTACGTAGGACCAATTACTCGCGGACGCTCTA
AGGAAATTCAAAAGTCAGAAGAAGAACAAGCCTCTGTCATTGCAAATATGATATGGACCCAGATGGTAGAGCCAAATCAAGGCGGAATGGTCATCCAAGAAAATCCTTTA
TTTGACTATTCTACTTCATCTTCTGAGCAGGCAAAGGAGACATGA
Protein sequenceShow/hide protein sequence
MDPRGETCQWVGPRPKGPGFWPDPLLGLGPVGIGHGPRPTLGPLVRVELVRLCLVPVASGHPDSTWFVPKRLRIPKNPRSMSRICNGDVAQMVERSLSMREILLQDSEDR
SLCKIQKLEDSSKTLKTEASTSLARPVGFLYFSSISLIQDLRKKSSKEAMASKKAASNTSSDSYVGPITRGRSKEIQKSEEEQASVIANMIWTQMVEPNQGGMVIQENPL
FDYSTSSSEQAKET