; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041616 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041616
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:21980411..21982214
RNA-Seq ExpressionLag0041616
SyntenyLag0041616
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036008.1 Retrotransposon gag protein [Cucumis melo var. makuwa]4.5e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.6e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0050734.1 gag protease polyprotein [Cucumis melo var. makuwa]7.6e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0050736.1 retrotransposon gag protein [Cucumis melo var. makuwa]9.9e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

KAA0065984.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.0e-1555.24Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTV--RYC
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS IPSR L   +    EG  TV  R+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTV--RYC

Query:  VVPSP
        +  +P
Subjt:  VVPSP

TrEMBL top hitse value%identityAlignment
A0A5A7SZJ7 Retrotransposon gag protein2.2e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7TQ06 Retrotransposon gag protein3.7e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7U974 Retrotransposon gag protein4.8e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC MST TR SAF+RLS+S SKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K++S +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

A0A5A7VFA5 Ty3-gypsy retrotransposon protein9.7e-1655.24Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTV--RYC
        +SMA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+ NDQ +R+M +L+ K F E N D K+HS IPSR L   +    EG  TV  R+ 
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTV--RYC

Query:  VVPSP
        +  +P
Subjt:  VVPSP

A0A5D3BBF9 Gag protease polyprotein3.7e-1552.83Show/hide
Query:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY
        +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ K F E N D K+HS +PSR   +  +    EG  TV  R+
Subjt:  MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLS-KFEGPYTV--RY

Query:  CVVPSP
         +  +P
Subjt:  CVVPSP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCCGTCACGTTCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGT
ATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTTCTCCCATCGCTTCAC
TACGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCATTCCCCCAAGTTCG
AAGGTTCTCACGCTCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGATTCTCACGCGCTTCGCTTTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCATGCGCTTCGCTGC
ACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGG
TTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCACTGCTCCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGA
AGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCAAAGTTCGTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCCTCCAAGTTCGAAG
GTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTATTGCTCCTTCTCCAAGTTC
GAAAGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTTCTTTTCAAATGTTTGGCGGCGGTTTACG
TCCTCGTTTCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGTATGGCCGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTC
AACATCTGTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATA
GTAGCATCCCGTCACGTTCTTTGCTGCAGTTCCTTCTCTCCAAGTTCGAGGGTCCTTACACTGTACGCTATTGCGTTGTTCCTTCTCCAAGTTCGAAGGTTCTTCGTTGT
ATCCTGCTGCGTTGTTCCTTCTCCAAGTTCGAGGGTTCTCAGTTGTACGACTGCTACGTTGTTCCTCCTCCAAGTGCGAAGGATCTTATGTGGTTCTCCCATCGCTTCAC
TACGATCCTTCCTCCAAGTTTGAAGGTTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCATTCCCCCAAGTTCG
AAGGTTCTCACGCTCTTCGTGCAGTTCCTTCCCCCAAGTTCGAAGATTCTCACGCGCTTCGCTTTGCAATTCCTTCCCCCAAGTTTGAAGGTTCTCATGCGCTTCGCTGC
ACAGTTCCTTCCTCCAAGTTCGAAGGTTCTCATGCGCTTCGTTGCTACCTTCCTCCAAGTTCGAAGGTTCTCTCACGCGCTGCTGCAGCTCCTTCCTCCAAGTTCGAAGG
TTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTTCACTGCTCCTCCAAGTTCGAAGGCGCTTCTCTCCGTTGCTACCTTCCTCCAAGTTCGA
AGGTTCTCTCACGCGCTGCTGCAGTTCCTTCCTCCAAGTTCAAAGTTCGTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCAGTTCGTTCCCTCCAAGTTCGAAG
GTTCCCTCACGCGCTTCGCTCGCTCCTTCTCCAAGTTCGAAGGCGCTTCTCTCCACTGCTCCTTCTCCAAGTTCAAAGGCGCTTCTCTCTATTGCTCCTTCTCCAAGTTC
GAAAGTGCTTCTCTCCACCCCTCTTTTTGAAGGTTCGCCACTGAGGTTCTCCTTCTCCAAGTTCGAAGGTTCACCGTTGCTTCTTTTCAAATGTTTGGCGGCGGTTTACG
TCCTCGTTTCGCTTCATCTTCAAATGTTGGTAGTTGACGGCGTCCGCTGCGCTTCATCTTCAAATGTTGGCAGTTGA
Protein sequenceShow/hide protein sequence
MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSVFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSIPSRSLLQFLLSKFEGPYTVRYCVVPSPSSKVLRC
ILLRCSFSKFEGSQLYDCYVVPPPSAKDLMWFSHRFTTILPPSLKVLTSLRCDPSSKFEGSHALRSAIHSPKFEGSHALRAVPSPKFEDSHALRFAIPSPKFEGSHALRC
TVPSSKFEGSHALRCYLPPSSKVLSRAAAAPSSKFEGSLTRFARSFSKFEGASLHCSSKFEGASLRCYLPPSSKVLSRAAAVPSSKFKVRSSKFKGSHALRCSSFPPSSK
VPSRASLAPSPSSKALLSTAPSPSSKALLSIAPSPSSKVLLSTPLFEGSPLRFSFSKFEGSPLLLFKCLAAVYVLVSLHLQMLVVDGVRCASSSNVGS