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Lag0041646 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041646
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRVT_3 domain-containing protein
Genome locationchr13:22926674..22927123
RNA-Seq ExpressionLag0041646
SyntenyLag0041646
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAV61531.1 RVT_3 domain-containing protein [Cephalotus follicularis]2.9e-0632.17Show/hide
Query:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW
        GSG G+++T+ DG  +    +F   + +   AE  AL+ G+++  HL+ + +  SSDS +VV ++NGE+++  D +  ++  +Q L  +F  FR   +P 
Subjt:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW

Query:  NRNIRANVLARRALA
         +N+RA+ L++ A A
Subjt:  NRNIRANVLARRALA

GAY61101.1 hypothetical protein CUMW_207140, partial [Citrus unshiu]2.9e-0626.43Show/hide
Query:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS
        V ++TDA  + +   +G G ++  ++G +     K      S+  AE  A+  G+++      + V + SDS  VV ++N    S S++Y  +++IQ L 
Subjt:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS

Query:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        +SF    C +   + N  A+ LA+ AL    +++W  ++P
Subjt:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

XP_015381856.1 uncharacterized protein LOC107175052 [Citrus sinensis]5.0e-0627.14Show/hide
Query:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS
        + ++ DA +  +   +G GV++    G I+ A  K +  S ++  AE  A+L G+++    +   V +  DS  V+++IN +  + +++   I  I    
Subjt:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS

Query:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        KSF +F+   +  + N+ A+ LA+ AL  ++S +WL+ FP
Subjt:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

XP_015383853.1 uncharacterized protein LOC107176237 [Citrus sinensis]1.3e-0629.71Show/hide
Query:  VSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKS
        V+ DA V+ +   +G GV++      +  A  K  L +  +  AE  A+  G+ +      + + + SD   VV++IN +  S ++V   I +IQ LSK 
Subjt:  VSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKS

Query:  FSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        F +F C+  P + N  A+ LA+ AL +  +++WL   P
Subjt:  FSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

XP_015385025.1 uncharacterized protein LOC107176703 [Citrus sinensis]6.5e-0627.54Show/hide
Query:  VSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKS
        V+ DA VH +   +G GV++    G I+ A  K      ++ AAE  A+  G+ +    +   V + +D + V  + N +  S  ++   I  I    + 
Subjt:  VSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKS

Query:  FSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        F S     +P   N  A+ LA+RAL  + ++ W  NFP
Subjt:  FSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

TrEMBL top hitse value%identityAlignment
A0A1Q3B0K5 RVT_3 domain-containing protein1.4e-0632.17Show/hide
Query:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW
        GSG G+++T+ DG  +    +F   + +   AE  AL+ G+++  HL+ + +  SSDS +VV ++NGE+++  D +  ++  +Q L  +F  FR   +P 
Subjt:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW

Query:  NRNIRANVLARRALA
         +N+RA+ L++ A A
Subjt:  NRNIRANVLARRALA

A0A1Q3BR57 RVT_3 domain-containing protein9.2e-0631.3Show/hide
Query:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW
        GSG G+++T+ DG  +    +F   + +   AE  AL+ G+ +  HL+ + + +SSDS +VV + NGE+++  D +  ++   Q    +F   R   +PW
Subjt:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW

Query:  NRNIRANVLARRALA
          N+RA+ L++ A+A
Subjt:  NRNIRANVLARRALA

A0A1Q3CIP5 RVT_3 domain-containing protein9.2e-0631.86Show/hide
Query:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW
        GSG G+++T+ DG  +    +F   + +   AE  AL+ G+ +  HL+ + +  SSDS +VV ++NGE+++  D +  ++  +Q L  +F  FR   +P 
Subjt:  GSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSD-VYHWIVQIQCLSKSFSSFRCHFIPW

Query:  NRNIRANVLARRA
          N RA+ L++ A
Subjt:  NRNIRANVLARRA

A0A2H5Q972 Uncharacterized protein (Fragment)1.4e-0626.43Show/hide
Query:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS
        V ++TDA  + +   +G G ++  ++G +     K      S+  AE  A+  G+++      + V + SDS  VV ++N    S S++Y  +++IQ L 
Subjt:  VHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLS

Query:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        +SF    C +   + N  A+ LA+ AL    +++W  ++P
Subjt:  KSFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

A0A7N2N255 RNase H domain-containing protein2.2e-0730.66Show/hide
Query:  STDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKSF
        S D  V  +  G G GV++  + G +MGAMSK     +  L  E  A+  G++L + L    V L SD+ +VV  + G+  S S +   +  I+     F
Subjt:  STDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSKSF

Query:  SSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP
        +S+    I  N N+ A++LA+ A    + I+W+ + P
Subjt:  SSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATAATCAACATGACAAGCATGAGGTTCATGTTTCTACTGATGCAACAGTGCATCCTCAAGCTTATGGGTCCGGGTATGGGGTGTTAATGACAGCAAAAGATGGAAA
CATTATGGGAGCTATGTCAAAATTTGATCTGACTTCGTTCTCCCTATTAGCGGCAGAAGTTCATGCCCTCCTGCATGGTATCAGATTATTATATCACCTACAACATGAAG
GTGTTTCACTTTCATCGGACTCCTTAATAGTTGTGCAAATGATTAATGGGGAACACCAATCTTCATCAGATGTGTACCATTGGATAGTGCAAATCCAGTGTTTGAGCAAG
TCATTTTCATCTTTTAGGTGCCATTTTATTCCTTGGAATAGAAACATTCGTGCAAACGTTTTGGCTAGAAGAGCATTAGCTCATATAAACTCTATTTTGTGGTTATCTAA
TTTTCCATAA
mRNA sequenceShow/hide mRNA sequence
ATGCATAATCAACATGACAAGCATGAGGTTCATGTTTCTACTGATGCAACAGTGCATCCTCAAGCTTATGGGTCCGGGTATGGGGTGTTAATGACAGCAAAAGATGGAAA
CATTATGGGAGCTATGTCAAAATTTGATCTGACTTCGTTCTCCCTATTAGCGGCAGAAGTTCATGCCCTCCTGCATGGTATCAGATTATTATATCACCTACAACATGAAG
GTGTTTCACTTTCATCGGACTCCTTAATAGTTGTGCAAATGATTAATGGGGAACACCAATCTTCATCAGATGTGTACCATTGGATAGTGCAAATCCAGTGTTTGAGCAAG
TCATTTTCATCTTTTAGGTGCCATTTTATTCCTTGGAATAGAAACATTCGTGCAAACGTTTTGGCTAGAAGAGCATTAGCTCATATAAACTCTATTTTGTGGTTATCTAA
TTTTCCATAA
Protein sequenceShow/hide protein sequence
MHNQHDKHEVHVSTDATVHPQAYGSGYGVLMTAKDGNIMGAMSKFDLTSFSLLAAEVHALLHGIRLLYHLQHEGVSLSSDSLIVVQMINGEHQSSSDVYHWIVQIQCLSK
SFSSFRCHFIPWNRNIRANVLARRALAHINSILWLSNFP