; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Lag0041647 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041647
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionRetrotransposon gag protein
Genome locationchr13:22994388..22996628
RNA-Seq ExpressionLag0041647
SyntenyLag0041647
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0040811.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.1e-0958.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+VK F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

KAA0044978.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.7e-0957.35Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

KAA0061331.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-0958.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNPT++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

KAA0063700.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.3e-0958.73Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDE
        M +L+ KLF E N+D  + S +PSRMKRK S+ INTEGSL VKP  II TNPT++G +Q  DE
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDE

KAA0068201.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.0e-0958.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G +Q  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

TrEMBL top hitse value%identityAlignment
A0A5A7TGM1 Retrotransposon gag protein2.5e-0958.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+VK F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

A0A5A7TQ06 Retrotransposon gag protein4.2e-0957.35Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

A0A5A7V6H5 Ty3-gypsy retrotransposon protein8.5e-1058.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNPT++G ++  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

A0A5A7V935 Ty3-gypsy retrotransposon protein1.1e-0958.73Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDE
        M +L+ KLF E N+D  + S +PSRMKRK S+ INTEGSL VKP  II TNPT++G +Q  DE
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDE

A0A5A7VRG7 Retrotransposon gag protein1.4e-0958.82Show/hide
Query:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC
        M +L+ K F E N+D K+ S +PSRMKRK SV INTEGSL VKP  II TNP ++G +Q  DE N SC
Subjt:  MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAA
GGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCCACGCGCTTCGCTGCAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCA
GTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCTTTCCTCACAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTGCGTTCCTTCCTCCAAGTTCG
AAGGTTCTCACACGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCA
TTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAGTTCGAAGGTTCTCACGCGCTGCGCTGCAGTTCCTTCCTCAAAGTTCAAAGGT
TCTCACGCGCTTCGTTGCAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCC
TTTCTCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGATTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCA
CGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACATCGCTTCGCTGCGATCCTTC
CTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGC
GCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCC
CAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGC
TTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGCGCTACTT
CCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCTAAAGTCCA
AAGACGTCAATTGTCCCTGCACTCATGCTGAAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCGAGGAACATGTCCCTGTACTCGTGCTGAAAGGCGC
GGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGTGGCACAAGTCCAAGGAACATGTCCCAACTCAAG
GAACACGTCCCTGTACTCGTGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGATAACTTGGAGGTGAAACTTTTCGATGAAGTAAACAACGACAAGAAGCTTCAAAGTAGCATCCCGTCACGTATGAAGAGGAAGTTCTCTGTTCTCATAAATACAGA
AGGTTCCTTGAAGGTGAAACCAAATCTCATTATCTTGACCAATCCTACAAGTCAAGGACCTGATCAAGACCATGATGAAGCGAATGGAAGTTGCTTCCTCCAAGTTCGAA
GGTTCCCACGCGCTTCGCTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCCACGCGCTTCGCTGCAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACGTCGCTTCGCTGCA
GTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGTTTCACTGCAGTTCTTTCCTCACAGTTCGAAGGTTCTCACATCGCTTCGCTTCGCTGCGTTCCTTCCTCCAAGTTCG
AAGGTTCTCACACGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGTTTCGCTGCA
TTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCAAGTTCGAAGGTTCTCACGCGCTGCGCTGCAGTTCCTTCCTCAAAGTTCAAAGGT
TCTCACGCGCTTCGTTGCAGTTCTTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTTGCTGCAGTTCCTTCCCCCAAGTTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCC
TTTCTCCAAGTTTGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCTCACAATTCGAAGATTCTCACATCGCTTCGCTGCGATCCTTCCTCCAAGTTCGAAGGTTCTCA
CGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCTCCAAGTTCGAAGGTTCTCACATCGCTTCGCTGCGATCCTTC
CTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCCCAAGTTCGAAGGTTCTCATGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGC
GCTTCGTTGCATTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGCTTCGCTGCAGTTCCTTCCTCCAAGTTCGAAGGTTCTCACGCGCTTCGCTCTGCAATTCCTTCCC
CAAAGTTCGAAGGTTCTCACGCGCTTCGTGCAGTTCCTTCCTCCAAATTCGAAGGTTCTCACGCGCTTCGTTGCAGTTCCTTCCCCCCAAATTCGAAGGTTCTCACGCGC
TTCGCTGCAGTTCCTTCCCCCCAAGTTCGAAGGTTCTCACGCACTTCGCTGCAGTTCCTTCCTCCAAGTTCAAAGGTTCTCACGCGCTTCGCTGCACTCCAGCGCTACTT
CCTAAAGTCCAAAGACGTCAATTGTCCTCACGCTGCGCTGCTTCCTTCTCCAAGTTCGAGGGTCCTCATGCTACGCTCGGCTACATTGCTGCGCTACTTCCTAAAGTCCA
AAGACGTCAATTGTCCCTGCACTCATGCTGAAAAGGGCATGGCGGCGACACAAGTCCAAGGACATGTCCCAAAGCGAGGAACATGTCCCTGTACTCGTGCTGAAAGGCGC
GGCGGCGGCACAAGTCCAAGGAACATGTCCCAACTCAAGGAACATGTCCGTGCACTCGTGCTGAAAGGCGTGGCGGTGGCACAAGTCCAAGGAACATGTCCCAACTCAAG
GAACACGTCCCTGTACTCGTGCTGA
Protein sequenceShow/hide protein sequence
MDNLEVKLFDEVNNDKKLQSSIPSRMKRKFSVLINTEGSLKVKPNLIILTNPTSQGPDQDHDEANGSCFLQVRRFPRASLQFLPPKFEGSTRFAAVPSLQVRRFSRRFAA
VPSSKFEGSHAFHCSSFLTVRRFSHRFASLRSFLQVRRFSHASLCNSFPKFEGSHALRAVPSSKFEGSHAFRCISFPPNSKVLTRFAAVPSSSSKVLTRCAAVPSSKFKG
SHALRCSSFLQVRRFSRALLQFLPPSSKVLTRFAAVPFSKFEGSHALRCSSFLTIRRFSHRFAAILPPSSKVLTRFALQFLPQVRRFSRASLQFLPSKFEGSHIASLRSF
LQVRRFSRASLCNSFPKFEGSHALRAVPSSKFEGSHALRCISFPPNSKVLTRFAAVPSSKFEGSHALRSAIPSPKFEGSHALRAVPSSKFEGSHALRCSSFPPNSKVLTR
FAAVPSPQVRRFSRTSLQFLPPSSKVLTRFAALQRYFLKSKDVNCPHAALLPSPSSRVLMLRSATLLRYFLKSKDVNCPCTHAEKGMAATQVQGHVPKRGTCPCTRAERR
GGGTSPRNMSQLKEHVRALVLKGVAVAQVQGTCPNSRNTSLYSC