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Lag0041654 (gene) of Sponge gourd (AG-4) v1 genome

Gene IDLag0041654
OrganismLuffa acutangula AG-4 (Sponge gourd (AG-4) v1)
DescriptionReverse transcriptase
Genome locationchr13:23130896..23131693
RNA-Seq ExpressionLag0041654
SyntenyLag0041654
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0003824 - catalytic activity (molecular function)
GO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0045293.1 uncharacterized protein E6C27_scaffold316G00510 [Cucumis melo var. makuwa]2.2e-4457.69Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        MS+    GK   +RL E+EEQMLYL EVPDS+RFLESRLE+IA +TD IDAVA RV+G+ IQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
        LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQTPTG A+ +++V I LKP+   F G+RD + +  Y
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]8.2e-4455.98Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV
        MS+    GK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVA RV+G PIQEL+ RV+ LE      +  ++ERGD+STGSVA +EERV
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
          LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQ PTGGA+ +++V I   PE   F G+RD + +  Y
Subjt:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-3065.09Show/hide
Query:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR
        ++VLIKL+PEQ+RFRG +DQRL+R+YEGPV+V++KVG  SYRV LP WMKI+PVIHVS+LKPYH D ED  RN VTRP + +    DK+VEE LAER RR
Subjt:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR

Query:  IGNPRR
           P R
Subjt:  IGNPRR

KAA0053339.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4356.59Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        MS+   LGK   +RLVE+EEQMLYL EVP S+RFLESRLEEIA + D IDAVA RV G+ IQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
        LDSSQK +++M+  +SE+ +A LDVVR E+AD++ARL+LTM+A+ NQ P GGA+ +++V I   PE   F G+RD + +  Y
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]1.1e-4355.98Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV
        MS+   LGK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVA RV+G PIQEL+ RV+ LE      +  ++ERGD+STGSVA +EERV
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
          LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQ P GGA+ +++V I   PE   F G+RD + +  Y
Subjt:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-3065.09Show/hide
Query:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR
        ++VLIKL+PEQ+RFRG +DQRL+R+YEGPV+V++KVG  SYRV LP WMKI+PVIHVS+LKPYH D ED  RN VTRP + +    DK+VEE LAER RR
Subjt:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR

Query:  IGNPRR
           P R
Subjt:  IGNPRR

TYK03099.1 reverse transcriptase [Cucumis melo var. makuwa]1.8e-4348.11Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        M +V   GK   +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVA RV+G+PIQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQ
        LDSSQK +++M+  + ED +A LDV R E+A+++ARL+LT++A+ NQ P GG + +++V I   PE   F G+RD + +  Y   ++   +         
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQ

Query:  LPAWMKIHPVIH
        +  W  +   +H
Subjt:  LPAWMKIHPVIH

TrEMBL top hitse value%identityAlignment
A0A5A7TP22 Uncharacterized protein1.1e-4457.69Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        MS+    GK   +RL E+EEQMLYL EVPDS+RFLESRLE+IA +TD IDAVA RV+G+ IQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
        LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQTPTG A+ +++V I LKP+   F G+RD + +  Y
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

A0A5A7UIP7 Reverse transcriptase4.0e-4455.98Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV
        MS+    GK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVA RV+G PIQEL+ RV+ LE      +  ++ERGD+STGSVA +EERV
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
          LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQ PTGGA+ +++V I   PE   F G+RD + +  Y
Subjt:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

A0A5A7UIP7 Reverse transcriptase8.6e-3165.09Show/hide
Query:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR
        ++VLIKL+PEQ+RFRG +DQRL+R+YEGPV+V++KVG  SYRV LP WMKI+PVIHVS+LKPYH D ED  RN VTRP + +    DK+VEE LAER RR
Subjt:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR

Query:  IGNPRR
           P R
Subjt:  IGNPRR

A0A5A7UIP7 Reverse transcriptase5.2e-4456.59Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        MS+   LGK   +RLVE+EEQMLYL EVP S+RFLESRLEEIA + D IDAVA RV G+ IQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
        LDSSQK +++M+  +SE+ +A LDVVR E+AD++ARL+LTM+A+ NQ P GGA+ +++V I   PE   F G+RD + +  Y
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

A0A5D3BYE6 Reverse transcriptase5.2e-4455.98Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV
        MS+   LGK   +RLVE+EEQMLYL EVPDS+R+LESRLEEI+ +T+ IDAVA RV+G PIQEL+ RV+ LE      +  ++ERGD+STGSVA +EERV
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLEN--RAVKPSSFERGDNSTGSVAQMEERV

Query:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY
          LDSSQK +++M+  +SED +A LDVVR E+AD++ARL+LTM+A+ NQ P GGA+ +++V I   PE   F G+RD + +  Y
Subjt:  DGLDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRY

A0A5D3BYE6 Reverse transcriptase8.6e-3165.09Show/hide
Query:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR
        ++VLIKL+PEQ+RFRG +DQRL+R+YEGPV+V++KVG  SYRV LP WMKI+PVIHVS+LKPYH D ED  RN VTRP + +    DK+VEE LAER RR
Subjt:  NKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYHPDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRR

Query:  IGNPRR
           P R
Subjt:  IGNPRR

A0A5D3BYE6 Reverse transcriptase8.9e-4448.11Show/hide
Query:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG
        M +V   GK   +RLVE+EEQMLYL +VPDS+RFLESRLEEIA +TD IDAVA RV+G+PIQEL+ RV+ LE    +  S ERGD+STGSVA +EERV  
Subjt:  MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDG

Query:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQ
        LDSSQK +++M+  + ED +A LDV R E+A+++ARL+LT++A+ NQ P GG + +++V I   PE   F G+RD + +  Y   ++   +         
Subjt:  LDSSQKAIVQMVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQ

Query:  LPAWMKIHPVIH
        +  W  +   +H
Subjt:  LPAWMKIHPVIH

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGCAGTAAAACAGTTGGGCAAGACCCATGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTAAGGGAAGTCCCCGATTCGGTGCGCTTCCTAGAATC
TCGTCTTGAAGAGATTGCGACGAGGACAGACCAGATTGATGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACA
GAGCTGTGAAACCTAGCAGCTTCGAGCGTGGGGACAACTCGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGATGGTCTGGACAGCTCCCAAAAGGCAATAGTTCAG
ATGGTCACAAAACTGTCTGAAGATGTGAAAGCGGCCCTTGACGTCGTCAGAGCCGAAGTGGCGGATTTAAGCGCCAGACTAAATCTCACCATGAAAGCGGTGGGAAACCA
AACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTGCTAATCAAGCTGAAACCTGAACAACTCCGTTTCCGGGGAAGTCGAGACCAGCGCCTCATCCGGAGATATGAAG
GTCCAGTCGACGTTATACAAAAGGTCGGGAAAGCGTCATATAGGGTTCAACTTCCTGCATGGATGAAAATCCATCCTGTCATTCATGTAAGTAGTTTGAAACCCTACCAC
CCCGACCTCGAGGATACCGCCCGCAATGAAGTCACTCGACCACCCGTCACGATGAAGAACGTCGCCGATAAAGAAGTCGAGGAAGAGTTAGCGGAAAGGACCCGTCGCAT
CGGCAACCCACGACGGGATCTACAATAG
mRNA sequenceShow/hide mRNA sequence
ATGTCGGCAGTAAAACAGTTGGGCAAGACCCATGTGGAACGATTGGTAGAGATCGAAGAGCAGATGCTCTACCTAAGGGAAGTCCCCGATTCGGTGCGCTTCCTAGAATC
TCGTCTTGAAGAGATTGCGACGAGGACAGACCAGATTGATGCGGTAGCTAGCCGCGTGGATGGAATGCCCATCCAAGAATTGATTATGAGGGTTGAAAACCTCGAGAACA
GAGCTGTGAAACCTAGCAGCTTCGAGCGTGGGGACAACTCGACGGGCTCTGTTGCCCAGATGGAGGAGCGTGTCGATGGTCTGGACAGCTCCCAAAAGGCAATAGTTCAG
ATGGTCACAAAACTGTCTGAAGATGTGAAAGCGGCCCTTGACGTCGTCAGAGCCGAAGTGGCGGATTTAAGCGCCAGACTAAATCTCACCATGAAAGCGGTGGGAAACCA
AACCCCGACAGGGGGTGCGGTCCAATTAAACAAAGTGCTAATCAAGCTGAAACCTGAACAACTCCGTTTCCGGGGAAGTCGAGACCAGCGCCTCATCCGGAGATATGAAG
GTCCAGTCGACGTTATACAAAAGGTCGGGAAAGCGTCATATAGGGTTCAACTTCCTGCATGGATGAAAATCCATCCTGTCATTCATGTAAGTAGTTTGAAACCCTACCAC
CCCGACCTCGAGGATACCGCCCGCAATGAAGTCACTCGACCACCCGTCACGATGAAGAACGTCGCCGATAAAGAAGTCGAGGAAGAGTTAGCGGAAAGGACCCGTCGCAT
CGGCAACCCACGACGGGATCTACAATAG
Protein sequenceShow/hide protein sequence
MSAVKQLGKTHVERLVEIEEQMLYLREVPDSVRFLESRLEEIATRTDQIDAVASRVDGMPIQELIMRVENLENRAVKPSSFERGDNSTGSVAQMEERVDGLDSSQKAIVQ
MVTKLSEDVKAALDVVRAEVADLSARLNLTMKAVGNQTPTGGAVQLNKVLIKLKPEQLRFRGSRDQRLIRRYEGPVDVIQKVGKASYRVQLPAWMKIHPVIHVSSLKPYH
PDLEDTARNEVTRPPVTMKNVADKEVEEELAERTRRIGNPRRDLQ